jgi.p|Nanoce1779_2|557988, mRNA_6491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557988
Unique NamemRNA_6491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length740
Alignment locationscaffold_18:17905..18670 +

Link to JBrowse

Properties
Property NameValue
TranscriptId558074
TrackFilteredModels2
ProteinId557988
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:17905..18670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557988gene_6491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557988mRNA_6491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6491CDS_6491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6491 ID=mRNA_6491|Name=jgi.p|Nanoce1779_2|557988|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
AAGACTACGTGTGGCAGCAGGTGATGGCGCTTATGACCAATAAGCTCGAT
CTGTGTAGTTTGACGTAGACGAAGGGACTTTGGCGGCTTGGTGAGTACGA
CCCGAAACTTCCGCACGTGCATCTTACTGAGAAGCTTGCGCAGCAAGATC
CCCGCCGGCATTTCCGGGTTGGAGAGCGCGCAAGCTATGTATGTGTGCAA
CGGGAGATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGT
GCTAGCGAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGC
GGATGCCCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCC
GAGGAACTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTC
AAGTGCGTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATT
GCGTTAACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAG
GGCCACGTCCTGCAAAGGTCCTTGATACCTTCCCACGAGACTCTTCGCGC
GTGCGAAAGGGAGCATCATCGAACCTATAGCCACTGCAGTAATTGCCAAC
GCGGAACCCGCCACAGGGAAGTTTTGTGTGCTAATGAGACATGCCCCGTG
ACGTACAAACGCGAAAAGTTTGCGCGTGAGCGGCAAGAGGCAGCAGAGCA
AGTCGAAGAGCTGGAGGCGGCGTTGCTACAGTGCGTCTAG
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protein sequence of jgi.p|Nanoce1779_2|557988

>mRNA_6491-protein ID=mRNA_6491-protein|Name=jgi.p|Nanoce1779_2|557988|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MDVPLYKKAEFPPFVLAKKMRLDRTEYIKQVRMPMIRMLQLITPVAEAEE
LFKPAFRAAPAGKVSSASTISHYFARSTDTHCVNCRARLPAKSVSAEKGH
VLQRSLIPSHETLRACEREHHRTYSHCSNCQRGTRHREVLCANETCPVTY
KREKFARERQEAAEQVEELEAALLQCV*
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mRNA from alignment at scaffold_18:17905..18670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6491 ID=mRNA_6491|Name=jgi.p|Nanoce1779_2|557988|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_18:17905..18670+ (Nannochloropsis oceanica)
AAGACTACGTGTGGCAGCAGGTGATGGCGCTTATGACCAATAAGCTCGAT
CTGTGTAGTTTGACGTAGACGAAGGGACTTTGGCGGCTTGGTGAGTACGA
CCCGAAACTTCCGCACGTGCATCTTACTGAGAAGCTTGCGCAGCAAGATC
CCCGCCGGCATTTCCGGGTTGGAGAGCGCGCAAGCTATGTATGTGTGCAA
CGGGAGATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGT
GCTAGCGAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGC
GGATGCCCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCC
GAGGAACTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTC
AAGTGCGTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATT
GCGTTAACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAG
GGCCACGGTGGTGCCTCGGTGCCCCTGTGCGAGTCCTGCAAAGGTCCTTG
ATACCTTCCCACGAGACTCTTCGCGCGTGCGAAAGGGAGCATCATCGAAC
CTATAGCCACTGCAGTAATTGCCAACGCGGAACCCGCCACAGGGAAGTTT
TGTGTGCTAATGAGACATGCCCCGTGACGTACAAACGCGAAAAGTTTGCG
CGTGAGCGGCAAGAGGCAGCAGAGCAAGTCGAAGAGCTGGAGGCGGCGTT
GCTACAGTGCGTCTAG
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Coding sequence (CDS) from alignment at scaffold_18:17905..18670+

>mRNA_6491 ID=mRNA_6491|Name=jgi.p|Nanoce1779_2|557988|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_18:17905..18670+ (Nannochloropsis oceanica)
ATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGC
GAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGCGGATGC
CCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAA
CTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGC
GTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATTGCGTTA
ACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCAC
GTCCTGCAAAGGTCCTTGATACCTTCCCACGAGACTCTTCGCGCGTGCGA
AAGGGAGCATCATCGAACCTATAGCCACTGCAGTAATTGCCAACGCGGAA
CCCGCCACAGGGAAGTTTTGTGTGCTAATGAGACATGCCCCGTGACGTAC
AAACGCGAAAAGTTTGCGCGTGAGCGGCAAGAGGCAGCAGAGCAAGTCGA
AGAGCTGGAGGCGGCGTTGCTACAGTGCGTCTAGATGGATGTACCCTTGT
ACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGCGAAGAAAATGAGATTG
GATCGGACAGAGTACATAAAGCAGGTGCGGATGCCCATGATAAGGATGTT
GCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAACTTTTCAAGCCGGCCT
TTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGCGTCGACCATTAGCCAC
TACTTTGCGCGCAGCACGGACACGCATTGCGTTAACTGTCGGGCACGTTT
ACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCACGTCCTGCAAAGGTCCT
TGATACCTTCCCACGAGACTCTTCGCGCGTGCGAAAGGGAGCATCATCGA
ACCTATAGCCACTGCAGTAATTGCCAACGCGGAACCCGCCACAGGGAAGT
TTTGTGTGCTAATGAGACATGCCCCGTGACGTACAAACGCGAAAAGTTTG
CGCGTGAGCGGCAAGAGGCAGCAGAGCAAGTCGAAGAGCTGGAGGCGGCG
TTGCTACAGTGCGTCTAG
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Synonyms
Publications