jgi.p|Nanoce1779_2|597155, mRNA_6490 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597155
Unique Name	mRNA_6490
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2237
Alignment location	scaffold_18:15068..17304 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597241
Track	FilteredModels2
ProteinId	597155

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:15068..17304 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597155	gene_6490	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597155	mRNA_6490-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6490	CDS_6490	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:15068..17304+
coding sequence from alignment at scaffold_18:15068..17304+

mRNA sequence

>mRNA_6490 ID=mRNA_6490|Name=jgi.p|Nanoce1779_2|597155|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp
AGGTTCTAAATATTTGCGGTTCTATCCATCTCCATCTGGAGCCATGGCCA
GCAGGGCGCGAGGCGACAGCTCACTACCTCGTACTCCCAGCGAGAAAAAG
CGGGCGCAGGGCAATGTAGCCGCGAAACCTGCACCCTAAAGTATCCACTT
CTTTATGCTTGACATGGATGAGGTGAATGACGGTGTAGAAATCCTCCTCT
ATGGCTGCACGCCCGAGCGCCTGAGCGTGATGCTGCGCCTTGCCGGCTTT
CGCTACAGCTTTCTCCTCGACGTCCCAGAAGGGAGCATTGGTGGAGTTGG
CCTGGACCCAGAGGTAGAATACAATATCCGGGCCGGAATTGGAGGACATG
CGGATTTTAGGTGTGAGTCAGTGACACGGCGGAGCTTAGTTTTATACCAG
CGCAAGCCCGACACGCGCATGTTGCGTGTCCGGGCACGCGTATCTCCACG
AATCGCATCGTCGCAGCTTTCCAAGCCGTCATGGGTAGACATAATGTTGT
GCTGTATGAGACACAGGTGGATGTCTTGACACGTTTCTCGTTGGACTGTG
GAATCCGTTGTGGCGAGTGGCTAGAAGTGTCTCTCGGTGAAGATACTGAT
GTTGATGACAATGAAGAAGAAGAAAAACGGGCGCAAAGTCGTCAATTCAT
CTGTGACGTCGAACTGGTCAGTCAGTGGGACGCTGGGCATAATAAAGTGC
TTTGTCGAGACCTGTCAGTTCAACTTCACACCTTTGCCGAGCCGAAATGG
AGCAAGCTGCCACTTTTAAAAGTTGTCACTGTCTATCGATCGATACCCCA
CCTCGCTATCCGATTCCGCGGGGGTATTCAGGGAAAAAGAAAGCCCAGAC
GCTATCCGCATGATTGGTATCGTCTTGACCGTCGAGAACGGTGGAAGTCT
GCCACACTGGCGCACCAAGATGCTGCTCCTCGACACAACAGGACTTGACG
ACAAGGTGGTCGCTCTTAAGGGGATGTCAACGTCAAGGATCTTGGGGATT
GGTAGGGGCTTGGTGATAAGGATGTATGGCAATGAAACGAATTTGTTGCA
GGCTTTCGAACGTTAAGTGTTACAAGAAGATCCGAGTCTGCTCACAGGAT
TCGAGGTCGGGGAAGCCTTGCGCGTACTGCTCGGACGAGCTGACGCGCTG
AAAATGGGGTAATTCGGAATGTTTTCACGGCGTCGAGGATAGAAGTTATC
AGTCAAGAACCAGCAGAGTTACAGTGCCAAATGGGTAAAAGACAAGGTTC
GTATGAGTGCGACTACAAATCAAGAAGGGACTGAAGTGCACTGTTTAACA
GACAAAATTTAACATAAAACATCAAAATAATGGCACGATTACCCGCTTGA
TCCCGGGTCGCGGGGTTCTGGACCTGATGCGCGTCATTCAAAAGAGCGAA
GCCTTGCGTCTCTATTCGCTGGGGGATATATCCATGCACGTCTTAGGGCG
GATTTTTGAAGTGCTGAGTACAATCCTTCTTTGCTGGAATGGACCACCTG
GGCTGGAACCGCGCTATACAAGCAGGGTTAAGTCCCGCAGTGCTTGCCTT
GGACGTGCTGCGCAACAAGAATGGGGTGGTCGAGATGGTAGAGGTGGCAC
GCATCACCGGTATGCCATTTTCGTACGTGTATATTCGAGGTCCAATGGCG
CGCGTGACCAGCCTGCTGACGCCACACGCCAAGACGTTATCGTTCCCACC
ACCACCGAAGGACTTTTGGACAAAGCGGGGCTCACCAAGTGCGCCATATT
GCTGGATCCTTCTGTTCCGTCTCCATCGAGTCCCGAGGGTATCAGTACCG
TCGGTCTGCATACAAGTCCCATCGCTGTTCTAGATTTCAGAAGTCTGTAT
CCTTCTATCATGGTACAACACAATTAGTGTTACAGCACTCTGGTCAACGA
CCCCTCGCAGCTGCAGAAAGGCAAAGGAGATACGGAAGTCTTCACGAACC
CTGGTGGTGCGCAGTTTGTGAAGTCTAAATTAAGACACGGCATCATGCCG
AGTCTCTTGGTTGACCTCCTTGGCGCTCGGCATCATGCACAACGAAAGAT
GAGAGACCCGGGCGCTACCGAGGGTGAGAAACGCGTGCTGGATGCGCGGC
AGAAGGCGTTCAAAGGCACGTTATGGTGATTAAAACCCCAAAAAAGTAAA
AAGAGCAAAAAACTTACATAACTTTCTGTATAGTCCGTACGGGTGCTTCC
GTCAACAGTCTCTTTTCGCGAGAGCTCGGTGACTCCA

protein sequence of jgi.p|Nanoce1779_2|597155

>mRNA_6490-protein ID=mRNA_6490-protein|Name=jgi.p|Nanoce1779_2|597155|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MRVIQKSEALRLYSLGDISMHVLGRIFEVLSTILLCWNGPPGLEPRYTSR
VKSRSACLGRAAQQEWGGRDGRGGTHHRYAIFVRVYSRSNGARDQPADAT
RQDVIVPTTTEGLLDKAGLTKCAILLDPSVPSPSSPEGISTVGLHTSPIA
VLDFRSLYPSIMVQHN*

mRNA from alignment at scaffold_18:15068..17304+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6490 ID=mRNA_6490|Name=jgi.p|Nanoce1779_2|597155|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp|location=Sequence derived from alignment at scaffold_18:15068..17304+ (Nannochloropsis oceanica)
AGGTTCTAAATATTTGCGGTTCTATCCATCTCCATCTGGAGCCATGGCCA
GCAGGGCGCGAGGCGACAGCTCACTACCTCGTACTCCCAGCGAGAAAAAG
CGGGCGCAGGGCAATGTAGCCGCGAAACCTGCACCCTAAAGTATCCACTT
CTTTATGCTTGACATGGATGAGGTGAATGACGGTGTAGAAATCCTCCTCT
ATGGCTGCACGCCCGAGCGCCTGAGCGTGATGCTGCGCCTTGCCGGCTTT
CGCTACAGCTTTCTCCTCGACGTCCCAGAAGGGAGCATTGGTGGAGTTGG
CCTGGACCCAGAGGTAGAATACAATATCCGGGCCGGAATTGGAGGACATG
CGGATTTTAGGTGTGAGTCAGTGACACGGCGGAGCTTAGTTTTATACCAG
CGCAAGCCCGACACGCGCATGTTGCGTGTCCGGGCACGCGTATCTCCACG
AATCGCATCGTCGCAGCTTTCCAAGCCGTCATGGGTAGACATAATGTTGT
GCTGTATGAGACACAGGTGGATGTCTTGACACGTTTCTCGTTGGACTGTG
GAATCCGTTGTGGCGAGTGGCTAGAAGTGTCTCTCGGTGAAGATACTGAT
GTTGATGACAATGAAGAAGAAGAAAAACGGGCGCAAAGTCGTCAATTCAT
CTGTGACGTCGAACTGGTCAGTCAGTGGGACGCTGGGCATAATAAAGTGC
TTTGTCGAGACCTGTCAGTTCAACTTCACACCTTTGCCGAGCCGAAATGG
AGCAAGCTGCCACTTTTAAAAGTTGTCACTGTCTATCGATCGATACCCCA
CCTCGCTATCCGATTCCGCGGGGGTATTCAGGGAAAAAGAAAGCCCAGAC
GCTATCCGCATGATTGGTATCGTCTTGACCGTCGAGAACGGTGGAAGTCT
GCCACACTGGCGCACCAAGATGCTGCTCCTCGACACAACAGGACTTGACG
ACAAGGTGGTCGCTCTTAAGGGGATGTCAACGTCAAGGATCTTGGGGATT
GGTAGGGGCTTGGTGATAAGGATGTATGGCAATGAAACGAATTTGTTGCA
GGCTTTCGAACGTTAAGTGTTACAAGAAGATCCGAGTCTGCTCACAGGAT
TCGAGGTCGGGGAAGCCTTGCGCGTACTGCTCGGACGAGCTGACGCGCTG
AAAATGGGGTAATTCGGAATGTTTTCACGGCGTCGAGGATAGAAGTTATC
AGTCAAGAACCAGCAGAGTTACAGTGCCAAATGGGTAAAAGACAAGGTTC
GTATGAGTGCGACTACAAATCAAGAAGGGACTGAAGTGCACTGTTTAACA
GACAAAATTTAACATAAAACATCAAAATAATGGCACGATTACCCGCTTGA
TCCCGGGTCGCGGGGTTCTGGACCTGATGCGCGTCATTCAAAAGAGCGAA
GCCTTGCGTCTCTATTCGCTGGGGGATATATCCATGCACGTCTTAGGGCG
GATTTTTGAAGTGCTGAGTACAATCCTTCTTTGCTGGAATGGACCACCTG
GGCTGGAACCGCGCTATACAAGCAGGGTTAAGTCCCGCAGTGCTTGCCTT
GGACGTGCTGCGCAACAAGAATGGGGTGGTCGAGATGGTAGAGGTGGCAC
GCATCACCGGTATGCCATTTTCGTACGTGTATATTCGAGGTCCAATGGCG
CGCGTGACCAGCCTGCTGACGCCACACGCCAAGACGTTATCGTTCCCACC
ACCACCGAAGGACTTTTGGACAAAGCGGGGCTCACCAAGTGCGCCATATT
GCTGGATCCTTCTGTTCCGTCTCCATCGAGTCCCGAGGGTATCAGTACCG
TCGGTCTGCATACAAGTCCCATCGCTGTTCTAGATTTCAGAAGTCTGTAT
CCTTCTATCATGGTACAACACAATTAGTGTTACAGCACTCTGGTCAACGA
CCCCTCGCAGCTGCAGAAAGGCAAAGGAGATACGGAAGTCTTCACGAACC
CTGGTGGTGCGCAGTTTGTGAAGTCTAAATTAAGACACGGCATCATGCCG
AGTCTCTTGGTTGACCTCCTTGGCGCTCGGCATCATGCACAACGAAAGAT
GAGAGACCCGGGCGCTACCGAGGGTGAGAAACGCGTGCTGGATGCGCGGC
AGAAGGCGTTCAAAGGCACGTTATGGTGATTAAAACCCCAAAAAAGTAAA
AAGAGCAAAAAACTTACATAACTTTCTGTATAGTCCGTACGGGTGCTTCC
GTCAACAGTCTCTTTTCGCGAGAGCTCGGTGACTCCA

Coding sequence (CDS) from alignment at scaffold_18:15068..17304+

>mRNA_6490 ID=mRNA_6490|Name=jgi.p|Nanoce1779_2|597155|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_18:15068..17304+ (Nannochloropsis oceanica)
ATGCGCGTCATTCAAAAGAGCGAAGCCTTGCGTCTCTATTCGCTGGGGGA
TATATCCATGCACGTCTTAGGGCGGATTTTTGAAGTGCTGAGTACAATCC
TTCTTTGCTGGAATGGACCACCTGGGCTGGAACCGCGCTATACAAGCAGG
GTTAAGTCCCGCAGTGCTTGCCTTGGACGTGCTGCGCAACAAGAATGGGG
TGGTCGAGATGGTAGAGGTGGCACGCATCACCGGTATGCCATTTTCGTAC
GTGTATATTCGAGGTCCAATGGCGCGCGTGACCAGCCTGCTGACGCCACA
CGCCAAGACGTTATCGTTCCCACCACCACCGAAGGACTTTTGGACAAAGC
GGGGCTCACCAAGTGCGCCATATTGCTGGATCCTTCTGTTCCGTCTCCAT
CGAGTCCCGAGGGTATCAGTACCGTCGGTCTGCATACAAGTCCCATCGCT
GTTCTAGATTTCAGAAGTCTGTATCCTTCTATCATGGTACAACACAATTA
G

Synonyms

Publications