jgi.p|Nanoce1779_2|597153, mRNA_6488 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597153
Unique Name	mRNA_6488
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2024
Alignment location	scaffold_18:12723..14746 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597239
Track	FilteredModels2
ProteinId	597153

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:12723..14746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597153	gene_6488	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597153	mRNA_6488-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6488	CDS_6488	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:12723..14746+
coding sequence from alignment at scaffold_18:12723..14746+

mRNA sequence

>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Nanoce1779_2|597153|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
ACAGGTACCATCAAGGATATATCGGGGCCGCCTTAGGTCCGGAGGGCCTG
CACCAAAAAAAAAGTCTAACGCAAGACTTCATATTATCCAACCTAGGGTC
CAGCCTTCTTCAATTGAACCAGTTGCCCTTCTCACCGCCACTGCTACGGC
CATCCCTTTGGTTTCTGGCGTCCCTTACAATGACGAAGAAGCATCAAAAG
GGCAAGCAAAAGCGGCGGCTGTTCGAGCGGTCCGAGACGCCCACGGACGA
TGACGGCTTCCCCACTTCCTCGTCCTGCTCCGCGTCTTCCCCTGCCTTCA
GCTGTGAGGGGCCAGCTCCCCCCACGTGTGTAGACGACGCCTACACTTAC
GAGTCTCGCTCGGCCACTTCTCGCCACAGAATCGGCAGCAGCAGCGGTGG
TGGTGCTGGAAGTGGTGGTGTGGGCGGGGATGAAAGGCATGGTGGGAGTA
GTTGGAAAGTGGAGGCGAATGCGAACGCTAGTGGTCGAAGCGACAGCCAG
AGCAAGGATAGCAGCGGAAATAACGGCAGCCAATGCAGTGACAAGGACCA
CCCACATTGGCCGGCTGGTAACTCAGCGAAATGGGACACGCTTGCCGCGC
CCAAGATGCATCTATACGAGGGTATTGCGGGGTTGTTTGAGGATAATGAG
CATGCAATCGGAAGGACCTATACCGAGGCGGCCTTGGAGCACTGGCGGGG
GTTGACCGTAGCAAGCAAGGCGAAGATACTAAGTGGGGTATCAAGGGAGG
ATGTGTACGATAGCTTGAGAGAGGTTGAGATCACGACGCAGTTTCCTGTG
GAGGGGGAGCCGAGGGAGGAAACTGCGCGAAAAGTGGCGGAGCAGTTTTT
GCATGCCATGGAGGTGACCGATGGGGTTTTCAAGTTCCCACATGCGCCAA
CGCTGGAGTTTGTAGGATTTTTTGCGTGTTTGGAGACGAATTTGCTGATG
TCCATGGAGGAGAGTAAGATCAAGAATGAGGCCGCGATGGTGCTCTTTCT
TCTGTTGTGGCGGCAGTCGTGGTGGTTGTATGGTTTTGTCCCTCTTCTCC
TCCTGCTGTTGCTAGAAAACAAGTGGTGTACCACTATGCGTGCTTGGGTA
TGGGAGGGTATGTGGCACGGATTCTGTGGACGGAGACGGTGGCAGCCTTA
TGTAAGATGGAAGGTCGAGGCATACATGGTTGCTGCCCTCAGCATCGTCA
TGTCCTCTCAGGAGCGGAAGAGATGGTACTACCTTTCCGTCATTTTAACG
GTCGCGGCAGTTTTTCTCGATTATCAGTCCGCCTCAACTCGATCGGGAAT
GGTCGACTCCACGACGTTAGTCAATACGAGGCAGCTTTTATTGCACCTGC
AGAAGTTCCTACTTCTCCTCCTCGCTTACCCAAGATATATCGACTTCCTT
TCCATAGGATTCTACTACTTCCCCACGGTTTTTATCCTCGTTCTGTCTAG
CATTTATTTCTTAGTTGGGTTCGGTATCCAATTATTCTGGCGACTGGTGC
GTGTCAAGGTCATGTCGAGATTCCCCAAATGGAGGGATGGGTTGGACGCA
TGGTGGCAAGAAGGGAGGGATGGCTTGAATCGCGCGGTGGTCATGGCCCT
GGTTGCCATCCTTGTTATCCCTTACACGTTTTATAAAAGCTGGTACACAG
TTCCGGCGTGGCGGGGATCATTTTGGCGGATTCTTAGTGTGCTGGTTGTG
ACCAATTTAGCTTCTGTGAAGGACTTGCAACGCACGTACTCGGCAGCGAA
AGAAGGGACGAGTACTATTTTGTATCGTGCGAGGAGGTGGATCAGGAAAA
TGATGGCATTTTCAGACAAAGCGAGGAGGGAGAAGGCGGCGTCGGAAGCG
TAGGCCAAGGAAGCGTGGGATACGGAGTTTCGATTGGGAACTGAGTAAGA
AACGGTCGTAGGAGGAGAGGCAATAGAGGGGTTGTATGATAGTGAAGAGA
CATTTTCGCCAACAAATTGATCGCACGAAGAAGCAATTTGGAAACCAGCT
TTCGAGCGAAGGGAGGAACGACAA

protein sequence of jgi.p|Nanoce1779_2|597153

>mRNA_6488-protein ID=mRNA_6488-protein|Name=jgi.p|Nanoce1779_2|597153|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MTKKHQKGKQKRRLFERSETPTDDDGFPTSSSCSASSPAFSCEGPAPPTC
VDDAYTYESRSATSRHRIGSSSGGGAGSGGVGGDERHGGSSWKVEANANA
SGRSDSQSKDSSGNNGSQCSDKDHPHWPAGNSAKWDTLAAPKMHLYEGIA
GLFEDNEHAIGRTYTEAALEHWRGLTVASKAKILSGVSREDVYDSLREVE
ITTQFPVEGEPREETARKVAEQFLHAMEVTDGVFKFPHAPTLEFVGFFAC
LETNLLMSMEESKIKNEAAMVLFLLLWRQSWWLYGFVPLLLLLLLENKWC
TTMRAWVWEGMWHGFCGRRRWQPYVRWKVEAYMVAALSIVMSSQERKRWY
YLSVILTVAAVFLDYQSASTRSGMVDSTTLVNTRQLLLHLQKFLLLLLAY
PRYIDFLSIGFYYFPTVFILVLSSIYFLVGFGIQLFWRLVRVKVMSRFPK
WRDGLDAWWQEGRDGLNRAVVMALVAILVIPYTFYKSWYTVPAWRGSFWR
ILSVLVVTNLASVKDLQRTYSAAKEGTSTILYRARRWIRKMMAFSDKARR
EKAASEA*

mRNA from alignment at scaffold_18:12723..14746+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Nanoce1779_2|597153|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at scaffold_18:12723..14746+ (Nannochloropsis oceanica)
ACAGGTACCATCAAGGATATATCGGGGCCGCCTTAGGTCCGGAGGGCCTG
CACCAAAAAAAAAGTCTAACGCAAGACTTCATATTATCCAACCTAGGGTC
CAGCCTTCTTCAATTGAACCAGTTGCCCTTCTCACCGCCACTGCTACGGC
CATCCCTTTGGTTTCTGGCGTCCCTTACAATGACGAAGAAGCATCAAAAG
GGCAAGCAAAAGCGGCGGCTGTTCGAGCGGTCCGAGACGCCCACGGACGA
TGACGGCTTCCCCACTTCCTCGTCCTGCTCCGCGTCTTCCCCTGCCTTCA
GCTGTGAGGGGCCAGCTCCCCCCACGTGTGTAGACGACGCCTACACTTAC
GAGTCTCGCTCGGCCACTTCTCGCCACAGAATCGGCAGCAGCAGCGGTGG
TGGTGCTGGAAGTGGTGGTGTGGGCGGGGATGAAAGGCATGGTGGGAGTA
GTTGGAAAGTGGAGGCGAATGCGAACGCTAGTGGTCGAAGCGACAGCCAG
AGCAAGGATAGCAGCGGAAATAACGGCAGCCAATGCAGTGACAAGGACCA
CCCACATTGGCCGGCTGGTAACTCAGCGAAATGGGACACGCTTGCCGCGC
CCAAGATGCATCTATACGAGGGTATTGCGGGGTTGTTTGAGGATAATGAG
CATGCAATCGGAAGGACCTATACCGAGGCGGCCTTGGAGCACTGGCGGGG
GTTGACCGTAGCAAGCAAGGCGAAGATACTAAGTGGGGTATCAAGGGAGG
ATGTGTACGATAGCTTGAGAGAGGTTGAGATCACGACGCAGTTTCCTGTG
GAGGGGGAGCCGAGGGAGGAAACTGCGCGAAAAGTGGCGGAGCAGTTTTT
GCATGCCATGGAGGTGACCGATGGGGTTTTCAAGTTCCCACATGCGCCAA
CGCTGGAGTTTGTAGGATTTTTTGCGTGTTTGGAGACGAATTTGCTGATG
TCCATGGAGGAGAGTAAGATCAAGAATGAGGCCGCGATGGTGCTCTTTCT
TCTGTTGTGGCGGCAGTCGTGGTGGTTGTATGGTTTTGTCCCTCTTCTCC
TCCTGCTGTTGCTAGAAAACAAGTGGTGTACCACTATGCGTGCTTGGGTA
TGGGAGGGTATGTGGCACGGATTCTGTGGACGGAGACGGTGGCAGCCTTA
TGTAAGATGGAAGGTCGAGGCATACATGGTTGCTGCCCTCAGCATCGTCA
TGTCCTCTCAGGAGCGGAAGAGATGGTACTACCTTTCCGTCATTTTAACG
GTCGCGGCAGTTTTTCTCGATTATCAGTCCGCCTCAACTCGATCGGGAAT
GGTCGACTCCACGACGTTAGTCAATACGAGGCAGCTTTTATTGCACCTGC
AGAAGTTCCTACTTCTCCTCCTCGCTTACCCAAGATATATCGACTTCCTT
TCCATAGGATTCTACTACTTCCCCACGGTTTTTATCCTCGTTCTGTCTAG
CATTTATTTCTTAGTTGGGTTCGGTATCCAATTATTCTGGCGACTGGTGC
GTGTCAAGGTCATGTCGAGATTCCCCAAATGGAGGGATGGGTTGGACGCA
TGGTGGCAAGAAGGGAGGGATGGCTTGAATCGCGCGGTGGTCATGGCCCT
GGTTGCCATCCTTGTTATCCCTTACACGTTTTATAAAAGCTGGTACACAG
TTCCGGCGTGGCGGGGATCATTTTGGCGGATTCTTAGTGTGCTGGTTGTG
ACCAATTTAGCTTCTGTGAAGGACTTGCAACGCACGTACTCGGCAGCGAA
AGAAGGGACGAGTACTATTTTGTATCGTGCGAGGAGGTGGATCAGGAAAA
TGATGGCATTTTCAGACAAAGCGAGGAGGGAGAAGGCGGCGTCGGAAGCG
TAGGCCAAGGAAGCGTGGGATACGGAGTTTCGATTGGGAACTGAGTAAGA
AACGGTCGTAGGAGGAGAGGCAATAGAGGGGTTGTATGATAGTGAAGAGA
CATTTTCGCCAACAAATTGATCGCACGAAGAAGCAATTTGGAAACCAGCT
TTCGAGCGAAGGGAGGAACGACAA

Coding sequence (CDS) from alignment at scaffold_18:12723..14746+

>mRNA_6488 ID=mRNA_6488|Name=jgi.p|Nanoce1779_2|597153|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_18:12723..14746+ (Nannochloropsis oceanica)
ATGACGAAGAAGCATCAAAAGGGCAAGCAAAAGCGGCGGCTGTTCGAGCG
GTCCGAGACGCCCACGGACGATGACGGCTTCCCCACTTCCTCGTCCTGCT
CCGCGTCTTCCCCTGCCTTCAGCTGTGAGGGGCCAGCTCCCCCCACGTGT
GTAGACGACGCCTACACTTACGAGTCTCGCTCGGCCACTTCTCGCCACAG
AATCGGCAGCAGCAGCGGTGGTGGTGCTGGAAGTGGTGGTGTGGGCGGGG
ATGAAAGGCATGGTGGGAGTAGTTGGAAAGTGGAGGCGAATGCGAACGCT
AGTGGTCGAAGCGACAGCCAGAGCAAGGATAGCAGCGGAAATAACGGCAG
CCAATGCAGTGACAAGGACCACCCACATTGGCCGGCTGGTAACTCAGCGA
AATGGGACACGCTTGCCGCGCCCAAGATGCATCTATACGAGGGTATTGCG
GGGTTGTTTGAGGATAATGAGCATGCAATCGGAAGGACCTATACCGAGGC
GGCCTTGGAGCACTGGCGGGGGTTGACCGTAGCAAGCAAGGCGAAGATAC
TAAGTGGGGTATCAAGGGAGGATGTGTACGATAGCTTGAGAGAGGTTGAG
ATCACGACGCAGTTTCCTGTGGAGGGGGAGCCGAGGGAGGAAACTGCGCG
AAAAGTGGCGGAGCAGTTTTTGCATGCCATGGAGGTGACCGATGGGGTTT
TCAAGTTCCCACATGCGCCAACGCTGGAGTTTGTAGGATTTTTTGCGTGT
TTGGAGACGAATTTGCTGATGTCCATGGAGGAGAGTAAGATCAAGAATGA
GGCCGCGATGGTGCTCTTTCTTCTGTTGTGGCGGCAGTCGTGGTGGTTGT
ATGGTTTTGTCCCTCTTCTCCTCCTGCTGTTGCTAGAAAACAAGTGGTGT
ACCACTATGCGTGCTTGGGTATGGGAGGGTATGTGGCACGGATTCTGTGG
ACGGAGACGGTGGCAGCCTTATGTAAGATGGAAGGTCGAGGCATACATGG
TTGCTGCCCTCAGCATCGTCATGTCCTCTCAGGAGCGGAAGAGATGGTAC
TACCTTTCCGTCATTTTAACGGTCGCGGCAGTTTTTCTCGATTATCAGTC
CGCCTCAACTCGATCGGGAATGGTCGACTCCACGACGTTAGTCAATACGA
GGCAGCTTTTATTGCACCTGCAGAAGTTCCTACTTCTCCTCCTCGCTTAC
CCAAGATATATCGACTTCCTTTCCATAGGATTCTACTACTTCCCCACGGT
TTTTATCCTCGTTCTGTCTAGCATTTATTTCTTAGTTGGGTTCGGTATCC
AATTATTCTGGCGACTGGTGCGTGTCAAGGTCATGTCGAGATTCCCCAAA
TGGAGGGATGGGTTGGACGCATGGTGGCAAGAAGGGAGGGATGGCTTGAA
TCGCGCGGTGGTCATGGCCCTGGTTGCCATCCTTGTTATCCCTTACACGT
TTTATAAAAGCTGGTACACAGTTCCGGCGTGGCGGGGATCATTTTGGCGG
ATTCTTAGTGTGCTGGTTGTGACCAATTTAGCTTCTGTGAAGGACTTGCA
ACGCACGTACTCGGCAGCGAAAGAAGGGACGAGTACTATTTTGTATCGTG
CGAGGAGGTGGATCAGGAAAATGATGGCATTTTCAGACAAAGCGAGGAGG
GAGAAGGCGGCGTCGGAAGCGTAG

Synonyms

Publications