jgi.p|Nanoce1779_2|597152, mRNA_6487 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597152
Unique Name	mRNA_6487
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1671
Alignment location	scaffold_18:10698..12368 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597238
Track	FilteredModels2
ProteinId	597152

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:10698..12368 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597152	gene_6487	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597152	mRNA_6487-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6487	CDS_6487	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:10698..12368-
coding sequence from alignment at scaffold_18:10698..12368-

mRNA sequence

>mRNA_6487 ID=mRNA_6487|Name=jgi.p|Nanoce1779_2|597152|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
GGCAAGCTAGTAACTGCAGCACGGCCAACCCGGAGATCTTTGTGCGGCGG
TTGTTCAAGCCGCGGCTCTACGACCAGGTCAGTATTGGGGCCGGCGTGGC
GAGGCAACTCGCTTCCATTAACCGACGCATGAGCGCGGGAACCAGCAGCA
GAAATAGCGGTGGCAACGGGTTTGCCCCACCCACAGTCCTAGCTGCCGAA
GTGGTCCAATCTGATTTTCTGATGCAATCATGCCTGGCACTGCCTGAGGA
GTTTGGAAAAATTTACTTAGGCGAGACGTTTTGTGCCTACGTCTCCGTTG
TCAATACCCTGCCGTGTTCCATCTACATCCTCGAAGCCCATGCCTCCCTC
AAGAGCTCTAGAAGCACCGAGGTACCCTTGCAAAATATGGCGGCGACACG
TCAAGCAGATTTAGAGGGGCTTGACCCACCACCTCTACCTTTACCCGGAC
AGTGGGGAGGACTTGGCGTGAGTCGGGAGCGGCCTCGCGAGCTGCGACCC
GGAGAGAATCTAGACGTAGTGGTAGAGCATGTCTTACAAGAATTAGACTG
GCATTATCTGGCCATCAAGCTTGAGTTTACGTCAACGGCTAAGCATGCAG
GCGGAGGAGGGGTAGGGTTTGGAGGAGAGGGACCAAGACCGATGATGAAA
CGATTTAAATTCAAGGTGTACAATCCGGTGTCATTGACGACGACTCAAAA
AGCCTTACCTACGGGGGAAGTGCTCCTGCAGGCACAGGTGAAGAATATCA
CGGAGCGACACACGAGTTTGCTATTGGAGGATGTGGTGTTTCTGGCAGAG
GAAGGCTTGAGGGCAGAAATGGTGGTGGTGCCGTCGTCGAAGGATGTCGT
GAGAAGAAGGAGAGGAGGTGGAGTGAGCAGAAGCAGCAGCGAAACGAGAA
AGGAGAATGAGTACGACATCGATGATAGTGAAGAGGACGAAGATCTCTTG
GATTGTGTGGCTGCATTTGATCGGCACGTCTATCTACTACCAGAGGACGT
TGTTCAGTACATATATCGCCTCCGTCCCGACATCCAACAGCAGCAGCAGA
GCCAAGCGCTACCACTTGTCCTCGCTGCAGGTATCCCTTTAGGGCAGCTC
CGAGTCTCCTGGCGGACGACCTTGGGAGAGGCAGGGACATTGTTAAGCCC
CCGTGTACATTGCTCGCCAGATGTAGCCACAGCATTCCGTCCCGTAGAGC
TGCGGCTAGTCCGACCTTTAACTGCCTCCATGGGACTGGAAAAGGAGGAA
AAACAGCAGGATGAAGAAGAGGGAGAGGGAGCAGGAGTATTGGTCCAGGG
ACAGGTATACACGGCGGATTGTGAGTTGCACAACAACACAGAAAAGGACT
TGTGGCTTCAGGTGCAGTTTCATCTGGATACCATGCAAGGCGTGTATGTA
ACAGGGAAATCGTTTCAAAATGCGGGTCTTGTCCCTGCCCATGGGACGCA
GAGGCTTACCTTTCAGTTGTTGCCGCTGATGGCGGGATTGCATGATGTAA
AGGGGTTGATAATATTAGACTTGGTTACTGCTCAGGAATTTCAGCAGGAG
AGACTATGTGAGGTGATGGTTGTGCGGAGATCTGGTTCCTCGGTGGGGTA
TGGGAAGCAGAGGGGGCAGCAGCAGGAGTCATTGGTGAGGGTGGATCATT
CTTGGGGGAACAACTAGAAAC

protein sequence of jgi.p|Nanoce1779_2|597152

>mRNA_6487-protein ID=mRNA_6487-protein|Name=jgi.p|Nanoce1779_2|597152|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MSAGTSSRNSGGNGFAPPTVLAAEVVQSDFLMQSCLALPEEFGKIYLGET
FCAYVSVVNTLPCSIYILEAHASLKSSRSTEVPLQNMAATRQADLEGLDP
PPLPLPGQWGGLGVSRERPRELRPGENLDVVVEHVLQELDWHYLAIKLEF
TSTAKHAGGGGVGFGGEGPRPMMKRFKFKVYNPVSLTTTQKALPTGEVLL
QAQVKNITERHTSLLLEDVVFLAEEGLRAEMVVVPSSKDVVRRRRGGGVS
RSSSETRKENEYDIDDSEEDEDLLDCVAAFDRHVYLLPEDVVQYIYRLRP
DIQQQQQSQALPLVLAAGIPLGQLRVSWRTTLGEAGTLLSPRVHCSPDVA
TAFRPVELRLVRPLTASMGLEKEEKQQDEEEGEGAGVLVQGQVYTADCEL
HNNTEKDLWLQVQFHLDTMQGVYVTGKSFQNAGLVPAHGTQRLTFQLLPL
MAGLHDVKGLIILDLVTAQEFQQERLCEVMVVRRSGSSVGYGKQRGQQQE
SLVRVDHSWGNN*

mRNA from alignment at scaffold_18:10698..12368-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6487 ID=mRNA_6487|Name=jgi.p|Nanoce1779_2|597152|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_18:10698..12368- (Nannochloropsis oceanica)
GGCAAGCTAGTAACTGCAGCACGGCCAACCCGGAGATCTTTGTGCGGCGG
TTGTTCAAGCCGCGGCTCTACGACCAGGTCAGTATTGGGGCCGGCGTGGC
GAGGCAACTCGCTTCCATTAACCGACGCATGAGCGCGGGAACCAGCAGCA
GAAATAGCGGTGGCAACGGGTTTGCCCCACCCACAGTCCTAGCTGCCGAA
GTGGTCCAATCTGATTTTCTGATGCAATCATGCCTGGCACTGCCTGAGGA
GTTTGGAAAAATTTACTTAGGCGAGACGTTTTGTGCCTACGTCTCCGTTG
TCAATACCCTGCCGTGTTCCATCTACATCCTCGAAGCCCATGCCTCCCTC
AAGAGCTCTAGAAGCACCGAGGTACCCTTGCAAAATATGGCGGCGACACG
TCAAGCAGATTTAGAGGGGCTTGACCCACCACCTCTACCTTTACCCGGAC
AGTGGGGAGGACTTGGCGTGAGTCGGGAGCGGCCTCGCGAGCTGCGACCC
GGAGAGAATCTAGACGTAGTGGTAGAGCATGTCTTACAAGAATTAGACTG
GCATTATCTGGCCATCAAGCTTGAGTTTACGTCAACGGCTAAGCATGCAG
GCGGAGGAGGGGTAGGGTTTGGAGGAGAGGGACCAAGACCGATGATGAAA
CGATTTAAATTCAAGGTGTACAATCCGGTGTCATTGACGACGACTCAAAA
AGCCTTACCTACGGGGGAAGTGCTCCTGCAGGCACAGGTGAAGAATATCA
CGGAGCGACACACGAGTTTGCTATTGGAGGATGTGGTGTTTCTGGCAGAG
GAAGGCTTGAGGGCAGAAATGGTGGTGGTGCCGTCGTCGAAGGATGTCGT
GAGAAGAAGGAGAGGAGGTGGAGTGAGCAGAAGCAGCAGCGAAACGAGAA
AGGAGAATGAGTACGACATCGATGATAGTGAAGAGGACGAAGATCTCTTG
GATTGTGTGGCTGCATTTGATCGGCACGTCTATCTACTACCAGAGGACGT
TGTTCAGTACATATATCGCCTCCGTCCCGACATCCAACAGCAGCAGCAGA
GCCAAGCGCTACCACTTGTCCTCGCTGCAGGTATCCCTTTAGGGCAGCTC
CGAGTCTCCTGGCGGACGACCTTGGGAGAGGCAGGGACATTGTTAAGCCC
CCGTGTACATTGCTCGCCAGATGTAGCCACAGCATTCCGTCCCGTAGAGC
TGCGGCTAGTCCGACCTTTAACTGCCTCCATGGGACTGGAAAAGGAGGAA
AAACAGCAGGATGAAGAAGAGGGAGAGGGAGCAGGAGTATTGGTCCAGGG
ACAGGTATACACGGCGGATTGTGAGTTGCACAACAACACAGAAAAGGACT
TGTGGCTTCAGGTGCAGTTTCATCTGGATACCATGCAAGGCGTGTATGTA
ACAGGGAAATCGTTTCAAAATGCGGGTCTTGTCCCTGCCCATGGGACGCA
GAGGCTTACCTTTCAGTTGTTGCCGCTGATGGCGGGATTGCATGATGTAA
AGGGGTTGATAATATTAGACTTGGTTACTGCTCAGGAATTTCAGCAGGAG
AGACTATGTGAGGTGATGGTTGTGCGGAGATCTGGTTCCTCGGTGGGGTA
TGGGAAGCAGAGGGGGCAGCAGCAGGAGTCATTGGTGAGGGTGGATCATT
CTTGGGGGAACAACTAGAAAC

Coding sequence (CDS) from alignment at scaffold_18:10698..12368-

>mRNA_6487 ID=mRNA_6487|Name=jgi.p|Nanoce1779_2|597152|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_18:10698..12368- (Nannochloropsis oceanica)
ATGAGCGCGGGAACCAGCAGCAGAAATAGCGGTGGCAACGGGTTTGCCCC
ACCCACAGTCCTAGCTGCCGAAGTGGTCCAATCTGATTTTCTGATGCAAT
CATGCCTGGCACTGCCTGAGGAGTTTGGAAAAATTTACTTAGGCGAGACG
TTTTGTGCCTACGTCTCCGTTGTCAATACCCTGCCGTGTTCCATCTACAT
CCTCGAAGCCCATGCCTCCCTCAAGAGCTCTAGAAGCACCGAGGTACCCT
TGCAAAATATGGCGGCGACACGTCAAGCAGATTTAGAGGGGCTTGACCCA
CCACCTCTACCTTTACCCGGACAGTGGGGAGGACTTGGCGTGAGTCGGGA
GCGGCCTCGCGAGCTGCGACCCGGAGAGAATCTAGACGTAGTGGTAGAGC
ATGTCTTACAAGAATTAGACTGGCATTATCTGGCCATCAAGCTTGAGTTT
ACGTCAACGGCTAAGCATGCAGGCGGAGGAGGGGTAGGGTTTGGAGGAGA
GGGACCAAGACCGATGATGAAACGATTTAAATTCAAGGTGTACAATCCGG
TGTCATTGACGACGACTCAAAAAGCCTTACCTACGGGGGAAGTGCTCCTG
CAGGCACAGGTGAAGAATATCACGGAGCGACACACGAGTTTGCTATTGGA
GGATGTGGTGTTTCTGGCAGAGGAAGGCTTGAGGGCAGAAATGGTGGTGG
TGCCGTCGTCGAAGGATGTCGTGAGAAGAAGGAGAGGAGGTGGAGTGAGC
AGAAGCAGCAGCGAAACGAGAAAGGAGAATGAGTACGACATCGATGATAG
TGAAGAGGACGAAGATCTCTTGGATTGTGTGGCTGCATTTGATCGGCACG
TCTATCTACTACCAGAGGACGTTGTTCAGTACATATATCGCCTCCGTCCC
GACATCCAACAGCAGCAGCAGAGCCAAGCGCTACCACTTGTCCTCGCTGC
AGGTATCCCTTTAGGGCAGCTCCGAGTCTCCTGGCGGACGACCTTGGGAG
AGGCAGGGACATTGTTAAGCCCCCGTGTACATTGCTCGCCAGATGTAGCC
ACAGCATTCCGTCCCGTAGAGCTGCGGCTAGTCCGACCTTTAACTGCCTC
CATGGGACTGGAAAAGGAGGAAAAACAGCAGGATGAAGAAGAGGGAGAGG
GAGCAGGAGTATTGGTCCAGGGACAGGTATACACGGCGGATTGTGAGTTG
CACAACAACACAGAAAAGGACTTGTGGCTTCAGGTGCAGTTTCATCTGGA
TACCATGCAAGGCGTGTATGTAACAGGGAAATCGTTTCAAAATGCGGGTC
TTGTCCCTGCCCATGGGACGCAGAGGCTTACCTTTCAGTTGTTGCCGCTG
ATGGCGGGATTGCATGATGTAAAGGGGTTGATAATATTAGACTTGGTTAC
TGCTCAGGAATTTCAGCAGGAGAGACTATGTGAGGTGATGGTTGTGCGGA
GATCTGGTTCCTCGGTGGGGTATGGGAAGCAGAGGGGGCAGCAGCAGGAG
TCATTGGTGAGGGTGGATCATTCTTGGGGGAACAACTAG

Synonyms

Publications