Properties
| Property Name | Value |
|---|
| TranscriptId | 672486 |
| Track | FilteredModels2 |
| ProteinId | 672400 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:1..3940 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6485 ID=mRNA_6485|Name=jgi.p|Nanoce1779_2|672400|organism=Nannochloropsis oceanica|type=mRNA|length=3112bp
ATGGAAGGGGAAGGGGAGGAGGAGGAGGAGGTGGTGGAAGCAGAGGAGGA
GGAGGGGGGGAAGGTGGAGGAGGAGGAGAACGGGGAGGAGGAGGAAGGGA
AAGGGGAGGAGGAGGCAGAGGCGGAGGAGGCGGAGGAGGCGGAGGAGGCG
GAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGTGGGCCATCCGA
GGACTTTGTTGGTGTGACACCTGTGAACACTTTGTGTCTCGGGACGGCAA
TGGGGCACGACGACACCGTTGCGGGGAGGGTGATTACACCAGATCAAGAC
AAGCAGCACTACATGCCGGAAGGGATGGGGCAAGACCTGGCGGATCAAGG
ACCATCATGGCTCAAACAAGGAGAAACAGGGTACAAGTCCGAGAAAGAGC
GCATCCCATTCGTCGAAGATAAGCTCACTGGCTTACATTCTTTTGAGAGC
CCGTTTTCTGGATAAGTTCACGTGCTCGGTCTTATTCACTTCCCAAATAT
TTTTTTATCATCACGAGGTAATTCTCTCCATTTCTTAACAATTTGTAAGT
AGCGTGACACGGACGTCTTTGCAGACCGACGCTCCGGCTAAAGGTATGCC
ATTGCAGGCCATTTTTCAACGTATTGCCCGAGCTGCGGGCAGTTTCTTTC
ATTCTCCACCTTTCCTCTTCACCTCTCTCCAAGACTGGAAATGCAACGAA
CACTTTTTCACTCGTGCACCACCCCCAAAAAATCCCGCGAGCACAACCGC
GAGCACAACCTCATTTTTGTTATTATTATCTGAATTGCTTTCTTAATTGT
ATTGCTGTATTCTATTTCCCCAATAATCGTACACACACATACATATACAA
CCACCTCTAATTTTGTTCTATCTTGCTGTCTTAATTGCGTTATGAAGCGC
TCTATTGCGTAGCGCTCAAGAGAGAGATGGCATCCAGGTTGTGCTCGTCG
TAGAGATGGTGGGCGTGCGGGGGCAAAGTCAGGACCCATTTGCGCGCCTG
CATCATTTCCACCAACTCACAAGTTGTTATACCCTTGGCAAGTGTGGAAG
CCGAACCGATAATAATGAGCTTCTTTTTCGCCCGGGACACCGCCACGTTG
ATGCGGCGTCGGTCGTGTAGTAAATGCCCAATCACGCCCTCCGCGTTCGA
ACGGACCATGGAAATAATCACACAGTCGCGATCCATCCCCTGCAGTTTAT
CCACTGTGTTAACCTCCAGCCTCTTAACGTGTTGAAGCTGCCGGCGCAAA
AGCTTCAGCTGGGAGCGCAAGGGCTTATGACAGCGACGCGCTCCGCGCGC
ACGCCGCCAATCACCAAGGCTGTCACCAGCTGAGCTACTAGGCGAGCCTC
GGTTGGATTAGTCAGGTTGGACGGACACTCGCGATCCCGCTTTCGCTTGC
ACCGCTTCCCCTCCCGTGCGGCCTCGTCACCTTTAATCTCTTGCTCTGTC
TCCGCCTCTTCATTCCTCGAGACCAACCCATCTTCCAGAGGTGCAGGGCT
AATGCCATCCGTGTCCAAAAACAACACAGAGCGATGTGACACAAAGCATC
CTTCCCAACCATCCCGGTCCGTTTTCTTCCTCGGCACACACGCCCTCGGC
CCGCAGAATCTGCAGGCGGTTAAAATGGGGCAAAGACAGCGTCGCGTCCG
CCACACGGTCATCCCCGCACTGAAGCTGGTTCGCATAGATCAAATTGTTA
CACACGGACATAATATCCCGATTCATCCGATACTGAAACGTCAAACGTTG
CAAACGCCTGCGGGTGGGCATGGGCAAGGCGCGAGAACAGACTCTCGCCC
ATTCCTTCCTCGGCCGCCTGTGGACTAACGACCAAAGGTGGAAGCTGGTT
ATGGTCCCCAACTAACACAAATGAAGATGCCAAGCGCAAGGGCCCTAAGC
AGACGGGCTCCAGAATCTGCCCTGCTTCATCCACAATGCAGACATCAAAG
CGCCGAGAAGCCAGCGCGGCATGGCGCATGCCTAGACAGGTTGTCGCAAC
CACTTGCGCGGTTCCGAGCTTGGCATCGAGCGTAGCCATCGAGCGTAGGC
CATCCCCGGCTTCGAGCAACGAATCGTGCAGCGCCGGTTGACTTGAGCGG
CCCTACCAAGACGGACGAAGGCACTTGGAACTCGCGGAGCTTGAGCAGGA
CGGTGTCGACAGCTGTATGGGTGTAGGAAGTGATGAGAACGCTTTTCCCA
GTCAGAACTAACGCGCGCACAATGAAGGCGATTGTCCAAGTCTTGCCCGT
GCCAGGCTACCGAGTATTAATGCAAATATCCTGAGCCGTCAGTACTTTCT
CCACCGCCGCGCTGCTGGTCATGATTACTGCACAAACTCCGTCTGCAATT
GCGCTTCCGCACAGCTAAGGTTTTGCGCTGCCCGCGCTGCCGTAGCAATG
CCACTGCATCAGCTGGGTAAGGATATGGCTCTTGTGTTGAAGACAGGTCG
CTGCAGATGAACTACCAAATGACGGCGTTTCTCGTCCCCCGCAGTAGGAG
TAAACGCAGCCATCCTTCTTTCGAAGTTCCTTTATCTGAGCGTTGCCGCG
AGTGGTGCTGCTCGTACTGCTGTTGGCGTTCTGGGCGGGACCGGAGAAGA
GGCCGACGACCGTTGGAGCGCATGGTAGTAAAATTCAGAGACGTGTTATC
TCTATCAATCCGGAAAACCACTACGTCCTTCTCTGCAAGATCTCGCCGCC
GTGACGCGCTCTCCTCCTTCGCCCTTTCCTCTCCCCGTCCTCGTCCTCGT
ACGCCAAGACTAACCCCCCGGCCCCTGTCCCGCGACTGCTTCTCTTTCTG
CTCACACCATCGCCAGCAGCAGCAGAAGATTAAAGGATAAAAAGGAGAAA
TCAGCATACCCAGGAACAGCAATAGCCTTTGAGCAAATTATGTCCACAGT
CGTCTCAGTCACCGCGCGCACATTTCCATTTGTCAGATTAATATGCTGAA
AAGGTAGCAAGTCCAACCGTCGGTCGGAAGCTTGGGCAGGCAGCAAACTC
TCAGTGCTGATTAGCAACACGGTCCTCCCCACTGCGATGGCCATCTCGTG
CAAAGAGCGAGGAATATCTTCCCCATCTTCTCCCTCTCCTCCACCCGCGG
TAGCAGCAAGCG back to topprotein sequence of jgi.p|Nanoce1779_2|672400 >mRNA_6485-protein ID=mRNA_6485-protein|Name=jgi.p|Nanoce1779_2|672400|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MEGEGEEEEEVVEAEEEEGGKVEEEENGEEEEGKGEEEAEAEEAEEAEEA
EEDEDEAEEEVMGGPSEDFVGVTPVNTLCLGTAMGHDDTVAGRVITPDQD
KQHYMPEGMGQDLADQGPSWLKQGETGYKSEKERIPFVEDKLTGLHSFES
PFSG* back to topmRNA from alignment at scaffold_18:1..3940- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6485 ID=mRNA_6485|Name=jgi.p|Nanoce1779_2|672400|organism=Nannochloropsis oceanica|type=mRNA|length=3940bp|location=Sequence derived from alignment at scaffold_18:1..3940- (Nannochloropsis oceanica)
ATGGAAGGGGAAGGGGAGGAGGAGGAGGAGGTGGTGGAAGCAGAGGAGGA
GGAGGGGGGGAAGGTGGAGGAGGAGGAGAACGGGGAGGAGGAGGAAGGGA
AAGGGGAGGAGGAGGCAGAGGCGGAGGAGGCGGAGGAGGCGGAGGAGGCG
GAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGTGGGCCATCCGA
GGACTTTGTTGGTGTGACACCTGTGAACACTTTGTGTCTCGGGACGGCAA
TGGGGCACGTAACATCCTGCGGGTGTACAGGAGTATGGTCCGTGGGGAAG
CTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGACA
CTCTATGTGTAGCGTTCCCGCTGACATCCTCTTTTATCCTCCTTCCCCCC
CTCCTGCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGGTCAAAAAC
CTGTCAAAGTCGCTAGTAAAACTCGGACAAGGAATAAGGGGTGAATATGC
AACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTAGAGGACG
CAGGGTGCATGCGATAGTTTTAGAGGGATGTAGGAACGGCAAAAAGAACT
ACGCAGAAGCCATCTCCTCCATCGCCGCGTCCCAAAGTTGGGTCAGGTTT
CTCAGAGGACCCTAAAAATGACCCAAACTCATTCATTTTATTTTTTTTAC
TGCACGCGGACCCACATAGTTCCAAACCACCTCATATGAGGTACTGCACG
TGGCTGCTTCATGTTTGCCCCACTTGGCATCATTTCTCCGTCCTTTCCCG
CCTTCATTCGATTCAAACGAGCCACTACTGTATACTATGTCACTTGAGTA
CAGGGAACATCCGGGAACGTAAAACTGGCCCTTCCTCAGCAGATATATTG
ATGCTCGCAATACCCCATGCGCTTCTCATTACCACAGTCTCACCCGCATC
ACAAAATTAGATGCTGCTCCGTTGCGCGTTTGGCATTGACCGAGCTCGTA
GCGCCTTTCCCTGGCGCACGCTAATGGTCGCAACAGACACTACTTCCACC
ATTCCCACGCCTCTACCGCAATCGTGCGACCGCAAGGACGACACCGTTGC
GGGGAGGGTGATTACACCAGATCAAGACAAGCAGCACTACATGCCGGAAG
GGATGGGGCAAGACCTGGCGGATCAAGGACCATCATGGCTCAAACAAGGA
GAAACAGGGTACAAGTCCGAGAAAGAGCGCATCCCATTCGTCGAAGATAA
GCTCACTGGCTTACATTCTTTTGAGAGCCCGTTTTCTGGATAAGTTCACG
TGCTCGGTCTTATTCACTTCCCAAATATTTTTTTATCATCACGAGGTAAT
TCTCTCCATTTCTTAACAATTTGTAAGTAGCGTGACACGGACGTCTTTGC
AGACCGACGCTCCGGCTAAAGGTATGCCATTGCAGGCCATTTTTCAACGT
ATTGCCCGAGCTGCGGGCAGTTTCTTTCATTCTCCACCTTTCCTCTTCAC
CTCTCTCCAAGACTGGAAATGCAACGAACACTTTTTCACTCGTGCACCAC
CCCCAAAAAATCCCGCGAGCACAACCGCGAGCACAACCTCATTTTTGTTA
TTATTATCTGAATTGCTTTCTTAATTGTATTGCTGTATTCTATTTCCCCA
ATAATCGTACACACACATACATATACAACCACCTCTAATTTTGTTCTATC
TTGCTGTCTTAATTGCGTTATGAAGCGCTCTATTGCGTAGCGCTCAAGAG
AGAGATGGCATCCAGGTTGTGCTCGTCGTAGAGATGGTGGGCGTGCGGGG
GCAAAGTCAGGACCCATTTGCGCGCCTGCATCATTTCCACCAACTCACAA
GTTGTTATACCCTTGGCAAGTGTGGAAGCCGAACCGATAATAATGAGCTT
CTTTTTCGCCCGGGACACCGCCACGTTGATGCGGCGTCGGTCGTGTAGTA
AATGCCCAATCACGCCCTCCGCGTTCGAACGGACCATGGAAATAATCACA
CAGTCGCGATCCATCCCCTGCAGTTTATCCACTGTGTTAACCTCCAGCCT
CTTAACGTGTTGAAGCTGCCGGCGCAAAAGCTTCAGCTGGGAGCGCAAGG
GCTTATGACAGCGACGCGCTCCGCGCGCACGCCGCCAATCACCAAGGCTG
TCACCAGCTGAGCTACTAGGCGAGCCTCGGTTGGATTAGTCAGGTTGGAC
GGACACTCGCGATCCCGCTTTCGCTTGCACCGCTTCCCCTCCCGTGCGGC
CTCGTCACCTTTAATCTCTTGCTCTGTCTCCGCCTCTTCATTCCTCGAGA
CCAACCCATCTTCCAGAGGTGCAGGGCTAATGCCATCCGTGTCCAAAAAC
AACACAGAGCGATGTGACACAAAGCATCCTTCCCAACCATCCCGGTCCGT
TTTCTTCCTCGGCACACACGCCCTCGGCCCGCAGAATCTGCAGGCGGTTA
AAATGGGGCAAAGACAGCGTCGCGTCCGCCACACGGTCATCCCCGCACTG
AAGCTGGTTCGCATAGATCAAATTGTTACACACGGACATAATATCCCGAT
TCATCCGATACTGAAACGTCAAACGTTGCAAACGCCTGCGGGTGGGCATG
GGCAAGGCGCGAGAACAGACTCTCGCCCATTCCTTCCTCGGCCGCCTGTG
GACTAACGACCAAAGGTGGAAGCTGGTTATGGTCCCCAACTAACACAAAT
GAAGATGCCAAGCGCAAGGGCCCTAAGCAGACGGGCTCCAGAATCTGCCC
TGCTTCATCCACAATGCAGACATCAAAGCGCCGAGAAGCCAGCGCGGCAT
GGCGCATGCCTAGACAGGTTGTCGCAACCACTTGCGCGGTTCCGAGCTTG
GCATCGAGCGTAGCCATCGAGCGTAGGCCATCCCCGGCTTCGAGCAACGA
ATCGTGCAGCGCCGGTTGACTTGAGCGGCCCTACCAAGACGGACGAAGGC
ACTTGGAACTCGCGGAGCTTGAGCAGGACGGTGTCGACAGCTGTATGGGT
GTAGGAAGTGATGAGAACGCTTTTCCCAGTCAGAACTAACGCGCGCACAA
TGAAGGCGATTGTCCAAGTCTTGCCCGTGCCAGGCTACCGAGTATTAATG
CAAATATCCTGAGCCGTCAGTACTTTCTCCACCGCCGCGCTGCTGGTCAT
GATTACTGCACAAACTCCGTCTGCAATTGCGCTTCCGCACAGCTAAGGTT
TTGCGCTGCCCGCGCTGCCGTAGCAATGCCACTGCATCAGCTGGGTAAGG
ATATGGCTCTTGTGTTGAAGACAGGTCGCTGCAGATGAACTACCAAATGA
CGGCGTTTCTCGTCCCCCGCAGTAGGAGTAAACGCAGCCATCCTTCTTTC
GAAGTTCCTTTATCTGAGCGTTGCCGCGAGTGGTGCTGCTCGTACTGCTG
TTGGCGTTCTGGGCGGGACCGGAGAAGAGGCCGACGACCGTTGGAGCGCA
TGGTAGTAAAATTCAGAGACGTGTTATCTCTATCAATCCGGAAAACCACT
ACGTCCTTCTCTGCAAGATCTCGCCGCCGTGACGCGCTCTCCTCCTTCGC
CCTTTCCTCTCCCCGTCCTCGTCCTCGTACGCCAAGACTAACCCCCCGGC
CCCTGTCCCGCGACTGCTTCTCTTTCTGCTCACACCATCGCCAGCAGCAG
CAGAAGATTAAAGGATAAAAAGGAGAAATCAGCATACCCAGGAACAGCAA
TAGCCTTTGAGCAAATTATGTCCACAGTCGTCTCAGTCACCGCGCGCACA
TTTCCATTTGTCAGATTAATATGCTGAAAAGGTAGCAAGTCCAACCGTCG
GTCGGAAGCTTGGGCAGGCAGCAAACTCTCAGTGCTGATTAGCAACACGG
TCCTCCCCACTGCGATGGCCATCTCGTGCAAAGAGCGAGGAATATCTTCC
CCATCTTCTCCCTCTCCTCCACCCGCGGTAGCAGCAAGCG back to topCoding sequence (CDS) from alignment at scaffold_18:1..3940- >mRNA_6485 ID=mRNA_6485|Name=jgi.p|Nanoce1779_2|672400|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_18:1..3940- (Nannochloropsis oceanica)
GACGACACCGTTGCGGGGAGGGTGATTACACCAGATCAAGACAAGCAGCA
CTACATGCCGGAAGGGATGGGGCAAGACCTGGCGGATCAAGGACCATCAT
GGCTCAAACAAGGAGAAACAGGGTACAAGTCCGAGAAAGAGCGCATCCCA
TTCGTCGAAGATAAGCTCACTGGCTTACATTCTTTTGAGAGCCCGTTTTC
TGGATAAATGGAAGGGGAAGGGGAGGAGGAGGAGGAGGTGGTGGAAGCAG
AGGAGGAGGAGGGGGGGAAGGTGGAGGAGGAGGAGAACGGGGAGGAGGAG
GAAGGGAAAGGGGAGGAGGAGGCAGAGGCGGAGGAGGCGGAGGAGGCGGA
GGAGGCGGAGGAGGACGAGGACGAGGCAGAGGAGGAGGTCATGGGTGGGC
CATCCGAGGACTTTGTTGGTGTGACACCTGTGAACACTTTGTGTCTCGGG
ACGGCAATGGGGCACGACGACACCGTTGCGGGGAGGGTGATTACACCAGA
TCAAGACAAGCAGCACTACATGCCGGAAGGGATGGGGCAAGACCTGGCGG
ATCAAGGACCATCATGGCTCAAACAAGGAGAAACAGGGTACAAGTCCGAG
AAAGAGCGCATCCCATTCGTCGAAGATAAGCTCACTGGCTTACATTCTTT
TGAGAGCCCGTTTTCTGGATAAATGGAAGGGGAAGGGGAGGAGGAGGAGG
AGGTGGTGGAAGCAGAGGAGGAGGAGGGGGGGAAGGTGGAGGAGGAGGAG
AACGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGGAGGCAGAGGCGGAGGA
GGCGGAGGAGGCGGAGGAGGCGGAGGAGGACGAGGACGAGGCAGAGGAGG
AGGTCATGGGTGGGCCATCCGAGGACTTTGTTGGTGTGACACCTGTGAAC
ACTTTGTGTCTCGGGACGGCAATGGGGCAC back to top
|