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Properties
| Property Name | Value |
|---|
| TranscriptId | 597217 |
| Track | FilteredModels2 |
| ProteinId | 597131 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:69..2211 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6484 ID=mRNA_6484|Name=jgi.p|Nanoce1779_2|597131|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGGCCATCGCAGTGGGGAGGACCGTGTTGCTAATCAGCACTGAGAGTTT
GCTGCCTGCCCAAGCTTCCGACCGACGGTTGGACTTGCTACCTTTTCAGC
ATATTAATCTGACAAATGGAAATGTGCGCGCGGTGACTGAGACGACTGTG
GACATAATTTGCTCAAAGGCTATTGCTGTTCCTGGGTATGCTGATTTCTC
CTTTTTATCCTTTAATCTTCTGCTGCTGCTGGCGATGCCTGGCACGGGCA
AGACTTGGACAATCGCCTTCATTGTGCGCGCGTTAGTTCTGACTGGGAAA
AGCGTTCTCATCACTTCCTACACCCATACAGCTGTCGACACCGTCCTGCT
CAAGCTCCGCGAGTTCCAATTGGGGACCATAACCAGCTTCCACCTTTGGT
CGTTAGTCCACAGGCGGCCGAGGAAGGAATGGGCGAGAGTCTGTTCTCGC
GCCTTGCCCATGCCCACCCGCAGGCGTTTGCAACGTTTGACGTTTCAGTA
TCGGATGAATCGGGATATTATGTCCGTGTGTAACAATTTGATCTATGCGA
ACCAGCTTCAGTGCGGGGATGACCGTGTGGCGGACGCGACGCTGTCTTTG
CCCCATTTTAACCGCCTGCAGATTCTGCGGGCCGAGGGCGTGTGTGCCGA
GGAAGAAAACGGACCGGGATGTAGCTCAGCTGGTGACAGCCTTGGTGATT
GGCGGCGTGCGCGCGGAGCGCGTCGCTGTCATAAGCCCTTGCGCTCCCAG
CTGAAGCTTTTGCGCCGGCAGCTTCAACACGTTAAGAGGCTGGAGGTTAA
CACAGTGGATAAACTGCAGGGGATGGATCGCGACTGTGTGATTATTTCCA
TGGTCCGTTCGAACGCGGAGGGCGTGATTGGGCATTTACTACACGACCGA
CGCCGCATCAACGTGGCGGTGTCCCGGGCGAAAAAGAAGCTCATTATTAT
CGGTTCGGCTTCCACACTTGCCAAGGGTATAACAACTTGTGAGTTGGTGG
AAATGATGCAGGCGCGCAAATGGGTCCTGACTTTGCCCCCGCACGCCCAC
CATCTCTACGACGAGCACAACCTGGATGCCATCTCTCTCTTGAGCGCTAC
GCAATAG back to topprotein sequence of jgi.p|Nanoce1779_2|597131 >mRNA_6484-protein ID=mRNA_6484-protein|Name=jgi.p|Nanoce1779_2|597131|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MAIAVGRTVLLISTESLLPAQASDRRLDLLPFQHINLTNGNVRAVTETTV
DIICSKAIAVPGYADFSFLSFNLLLLLAMPGTGKTWTIAFIVRALVLTGK
SVLITSYTHTAVDTVLLKLREFQLGTITSFHLWSLVHRRPRKEWARVCSR
ALPMPTRRRLQRLTFQYRMNRDIMSVCNNLIYANQLQCGDDRVADATLSL
PHFNRLQILRAEGVCAEEENGPGCSSAGDSLGDWRRARGARRCHKPLRSQ
LKLLRRQLQHVKRLEVNTVDKLQGMDRDCVIISMVRSNAEGVIGHLLHDR
RRINVAVSRAKKKLIIIGSASTLAKGITTCELVEMMQARKWVLTLPPHAH
HLYDEHNLDAISLLSATQ* back to topmRNA from alignment at scaffold_18:69..2211+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6484 ID=mRNA_6484|Name=jgi.p|Nanoce1779_2|597131|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_18:69..2211+ (Nannochloropsis oceanica)
ATGGCCATCGCAGTGGGGAGGACCGTGTTGCTAATCAGCACTGAGAGTTT
GCTGCCTGCCCAAGCTTCCGACCGACGGTTGGACTTGCTACCTTTTCAGC
ATATTAATCTGACAAATGGAAATGTGCGCGCGGTGACTGAGACGACTGTG
GACATAATTTGCTCAAAGGCTATTGCTGTTCCTGGGTATGCTGATTTCTC
CTTTTTATCCTTTAATCTTCTGCTGCTGCTGGCGATGGTGTGAGCAGAAA
GAGAAGCAGTCGCGGGACAGGGGCCGGGGGGTTAGTCTTGGCGTACGAGG
ACGAGGACGGGGAGAGGAAAGGGCGAAGGAGGAGAGCGCGTCACGGCGGC
GAGATCTTGCAGAGAAGGACGTAGTGGTTTTCCGGATTGATAGAGATAAC
ACGTCTCTGAATTTTACTACCATGCGCTCCAACGGTCGTCGGCCTCTTCT
CCGGTCCCGCCCAGAACGCCAACAGCAGTACGAGCAGCACCACTCGCGGC
AACGCTCAGATAAAGGAACTTCGAAAGAAGGATGGCTGCGTTTACTCCTA
CTGCGGGGGACGAGAAACGCCGTCATTTGGTAGTTCATCTGCAGCGACCT
GTCTTCAACACAAGAGCCATATCCTTACCCAGCTGATGCAGTGGCATTGC
TACGGCAGCGCGGGCAGCGCAAAACCTTAGCTGTGCGGAAGCGCAATTGC
AGACGGAGTTTGTGCAGTAATCATGACCAGCAGCGCGGCGGTGGAGAAAG
TACTGACGGCTCAGGATATTTGCATTAATACTCGGTAGCCTGGCACGGGC
AAGACTTGGACAATCGCCTTCATTGTGCGCGCGTTAGTTCTGACTGGGAA
AAGCGTTCTCATCACTTCCTACACCCATACAGCTGTCGACACCGTCCTGC
TCAAGCTCCGCGAGTTCCAAGTGCCTTCGTCCGTCTTGGTAGGGCCGCTC
AAGTCAACCGGCGCTGCACGATTCGTTGCTCGAAGCCGGGGATGGCCTAC
GCTCGATGGCTACGCTCGATGCCAAGCTCGGAACCGCGCAAGTGGTTGCG
ACAACCTGTCTAGGCATGCGCCATGCCGCGCTGGCTTCTCGGCGCTTTGA
TGTCTGCATTGTGGATGAAGCAGGGCAGATTCTGGAGCCCGTCTGCTTAG
GGCCCTTGCGCTTGGCATCTTCATTTGTGTTAGTTGGGGACCATAACCAG
CTTCCACCTTTGGTCGTTAGTCCACAGGCGGCCGAGGAAGGAATGGGCGA
GAGTCTGTTCTCGCGCCTTGCCCATGCCCACCCGCAGGCGTTTGCAACGT
TTGACGTTTCAGTATCGGATGAATCGGGATATTATGTCCGTGTGTAACAA
TTTGATCTATGCGAACCAGCTTCAGTGCGGGGATGACCGTGTGGCGGACG
CGACGCTGTCTTTGCCCCATTTTAACCGCCTGCAGATTCTGCGGGCCGAG
GGCGTGTGTGCCGAGGAAGAAAACGGACCGGGATGGTTGGGAAGGATGCT
TTGTGTCACATCGCTCTGTGTTGTTTTTGGACACGGATGGCATTAGCCCT
GCACCTCTGGAAGATGGGTTGGTCTCGAGGAATGAAGAGGCGGAGACAGA
GCAAGAGATTAAAGGTGACGAGGCCGCACGGGAGGGGAAGCGGTGCAAGC
GAAAGCGGGATCGCGAGTGTCCGTCCAACCTGACTAATCCAACCGAGGCT
CGCCTAGTAGCTCAGCTGGTGACAGCCTTGGTGATTGGCGGCGTGCGCGC
GGAGCGCGTCGCTGTCATAAGCCCTTGCGCTCCCAGCTGAAGCTTTTGCG
CCGGCAGCTTCAACACGTTAAGAGGCTGGAGGTTAACACAGTGGATAAAC
TGCAGGGGATGGATCGCGACTGTGTGATTATTTCCATGGTCCGTTCGAAC
GCGGAGGGCGTGATTGGGCATTTACTACACGACCGACGCCGCATCAACGT
GGCGGTGTCCCGGGCGAAAAAGAAGCTCATTATTATCGGTTCGGCTTCCA
CACTTGCCAAGGGTATAACAACTTGTGAGTTGGTGGAAATGATGCAGGCG
CGCAAATGGGTCCTGACTTTGCCCCCGCACGCCCACCATCTCTACGACGA
GCACAACCTGGATGCCATCTCTCTCTTGAGCGCTACGCAATAG back to topCoding sequence (CDS) from alignment at scaffold_18:69..2211+ >mRNA_6484 ID=mRNA_6484|Name=jgi.p|Nanoce1779_2|597131|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_18:69..2211+ (Nannochloropsis oceanica)
ATGGCCATCGCAGTGGGGAGGACCGTGTTGCTAATCAGCACTGAGAGTTT
GCTGCCTGCCCAAGCTTCCGACCGACGGTTGGACTTGCTACCTTTTCAGC
ATATTAATCTGACAAATGGAAATGTGCGCGCGGTGACTGAGACGACTGTG
GACATAATTTGCTCAAAGGCTATTGCTGTTCCTGGGTATGCTGATTTCTC
CTTTTTATCCTTTAATCTTCTGCTGCTGCTGGCGATGCCTGGCACGGGCA
AGACTTGGACAATCGCCTTCATTGTGCGCGCGTTAGTTCTGACTGGGAAA
AGCGTTCTCATCACTTCCTACACCCATACAGCTGTCGACACCGTCCTGCT
CAAGCTCCGCGAGTTCCAATTGGGGACCATAACCAGCTTCCACCTTTGGT
CGTTAGTCCACAGGCGGCCGAGGAAGGAATGGGCGAGAGTCTGTTCTCGC
GCCTTGCCCATGCCCACCCGCAGGCGTTTGCAACGTTTGACGTTTCAGTA
TCGGATGAATCGGGATATTATGTCCGTGTGTAACAATTTGATCTATGCGA
ACCAGCTTCAGTGCGGGGATGACCGTGTGGCGGACGCGACGCTGTCTTTG
CCCCATTTTAACCGCCTGCAGATTCTGCGGGCCGAGGGCGTGTGTGCCGA
GGAAGAAAACGGACCGGGATGTAGCTCAGCTGGTGACAGCCTTGGTGATT
GGCGGCGTGCGCGCGGAGCGCGTCGCTGTCATAAGCCCTTGCGCTCCCAG
CTGAAGCTTTTGCGCCGGCAGCTTCAACACGTTAAGAGGCTGGAGGTTAA
CACAGTGGATAAACTGCAGGGGATGGATCGCGACTGTGTGATTATTTCCA
TGGTCCGTTCGAACGCGGAGGGCGTGATTGGGCATTTACTACACGACCGA
CGCCGCATCAACGTGGCGGTGTCCCGGGCGAAAAAGAAGCTCATTATTAT
CGGTTCGGCTTCCACACTTGCCAAGGGTATAACAACTTGTGAGTTGGTGG
AAATGATGCAGGCGCGCAAATGGGTCCTGACTTTGCCCCCGCACGCCCAC
CATCTCTACGACGAGCACAACCTGGATGCCATCTCTCTCTTGAGCGCTAC
GCAATAGATGGCCATCGCAGTGGGGAGGACCGTGTTGCTAATCAGCACTG
AGAGTTTGCTGCCTGCCCAAGCTTCCGACCGACGGTTGGACTTGCTACCT
TTTCAGCATATTAATCTGACAAATGGAAATGTGCGCGCGGTGACTGAGAC
GACTGTGGACATAATTTGCTCAAAGGCTATTGCTGTTCCTGGGTATGCTG
ATTTCTCCTTTTTATCCTTTAATCTTCTGCTGCTGCTGGCGATGCCTGGC
ACGGGCAAGACTTGGACAATCGCCTTCATTGTGCGCGCGTTAGTTCTGAC
TGGGAAAAGCGTTCTCATCACTTCCTACACCCATACAGCTGTCGACACCG
TCCTGCTCAAGCTCCGCGAGTTCCAATTGGGGACCATAACCAGCTTCCAC
CTTTGGTCGTTAGTCCACAGGCGGCCGAGGAAGGAATGGGCGAGAGTCTG
TTCTCGCGCCTTGCCCATGCCCACCCGCAGGCGTTTGCAACGTTTGACGT
TTCAGTATCGGATGAATCGGGATATTATGTCCGTGTGTAACAATTTGATC
TATGCGAACCAGCTTCAGTGCGGGGATGACCGTGTGGCGGACGCGACGCT
GTCTTTGCCCCATTTTAACCGCCTGCAGATTCTGCGGGCCGAGGGCGTGT
GTGCCGAGGAAGAAAACGGACCGGGATGTAGCTCAGCTGGTGACAGCCTT
GGTGATTGGCGGCGTGCGCGCGGAGCGCGTCGCTGTCATAAGCCCTTGCG
CTCCCAGCTGAAGCTTTTGCGCCGGCAGCTTCAACACGTTAAGAGGCTGG
AGGTTAACACAGTGGATAAACTGCAGGGGATGGATCGCGACTGTGTGATT
ATTTCCATGGTCCGTTCGAACGCGGAGGGCGTGATTGGGCATTTACTACA
CGACCGACGCCGCATCAACGTGGCGGTGTCCCGGGCGAAAAAGAAGCTCA
TTATTATCGGTTCGGCTTCCACACTTGCCAAGGGTATAACAACTTGTGAG
TTGGTGGAAATGATGCAGGCGCGCAAATGGGTCCTGACTTTGCCCCCGCA
CGCCCACCATCTCTACGACGAGCACAACCTGGATGCCATCTCTCTCTTGA
GCGCTACGCAATAGATGGCCATCGCAGTGGGGAGGACCGTGTTGCTAATC
AGCACTGAGAGTTTGCTGCCTGCCCAAGCTTCCGACCGACGGTTGGACTT
GCTACCTTTTCAGCATATTAATCTGACAAATGGAAATGTGCGCGCGGTGA
CTGAGACGACTGTGGACATAATTTGCTCAAAGGCTATTGCTGTTCCTGGG
TATGCTGATTTCTCCTTTTTATCCTTTAATCTTCTGCTGCTGCTGGCGAT
GCCTGGCACGGGCAAGACTTGGACAATCGCCTTCATTGTGCGCGCGTTAG
TTCTGACTGGGAAAAGCGTTCTCATCACTTCCTACACCCATACAGCTGTC
GACACCGTCCTGCTCAAGCTCCGCGAGTTCCAATTGGGGACCATAACCAG
CTTCCACCTTTGGTCGTTAGTCCACAGGCGGCCGAGGAAGGAATGGGCGA
GAGTCTGTTCTCGCGCCTTGCCCATGCCCACCCGCAGGCGTTTGCAACGT
TTGACGTTTCAGTATCGGATGAATCGGGATATTATGTCCGTGTGTAACAA
TTTGATCTATGCGAACCAGCTTCAGTGCGGGGATGACCGTGTGGCGGACG
CGACGCTGTCTTTGCCCCATTTTAACCGCCTGCAGATTCTGCGGGCCGAG
GGCGTGTGTGCCGAGGAAGAAAACGGACCGGGATGTAGCTCAGCTGGTGA
CAGCCTTGGTGATTGGCGGCGTGCGCGCGGAGCGCGTCGCTGTCATAAGC
CCTTGCGCTCCCAGCTGAAGCTTTTGCGCCGGCAGCTTCAACACGTTAAG
AGGCTGGAGGTTAACACAGTGGATAAACTGCAGGGGATGGATCGCGACTG
TGTGATTATTTCCATGGTCCGTTCGAACGCGGAGGGCGTGATTGGGCATT
TACTACACGACCGACGCCGCATCAACGTGGCGGTGTCCCGGGCGAAAAAG
AAGCTCATTATTATCGGTTCGGCTTCCACACTTGCCAAGGGTATAACAAC
TTGTGAGTTGGTGGAAATGATGCAGGCGCGCAAATGGGTCCTGACTTTGC
CCCCGCACGCCCACCATCTCTACGACGAGCACAACCTGGATGCCATCTCT
CTCTTGAGCGCTACGCAATAGATGGCCATCGCAGTGGGGAGGACCGTGTT
GCTAATCAGCACTGAGAGTTTGCTGCCTGCCCAAGCTTCCGACCGACGGT
TGGACTTGCTACCTTTTCAGCATATTAATCTGACAAATGGAAATGTGCGC
GCGGTGACTGAGACGACTGTGGACATAATTTGCTCAAAGGCTATTGCTGT
TCCTGGGTATGCTGATTTCTCCTTTTTATCCTTTAATCTTCTGCTGCTGC
TGGCGATGCCTGGCACGGGCAAGACTTGGACAATCGCCTTCATTGTGCGC
GCGTTAGTTCTGACTGGGAAAAGCGTTCTCATCACTTCCTACACCCATAC
AGCTGTCGACACCGTCCTGCTCAAGCTCCGCGAGTTCCAATTGGGGACCA
TAACCAGCTTCCACCTTTGGTCGTTAGTCCACAGGCGGCCGAGGAAGGAA
TGGGCGAGAGTCTGTTCTCGCGCCTTGCCCATGCCCACCCGCAGGCGTTT
GCAACGTTTGACGTTTCAGTATCGGATGAATCGGGATATTATGTCCGTGT
GTAACAATTTGATCTATGCGAACCAGCTTCAGTGCGGGGATGACCGTGTG
GCGGACGCGACGCTGTCTTTGCCCCATTTTAACCGCCTGCAGATTCTGCG
GGCCGAGGGCGTGTGTGCCGAGGAAGAAAACGGACCGGGATGTAGCTCAG
CTGGTGACAGCCTTGGTGATTGGCGGCGTGCGCGCGGAGCGCGTCGCTGT
CATAAGCCCTTGCGCTCCCAGCTGAAGCTTTTGCGCCGGCAGCTTCAACA
CGTTAAGAGGCTGGAGGTTAACACAGTGGATAAACTGCAGGGGATGGATC
GCGACTGTGTGATTATTTCCATGGTCCGTTCGAACGCGGAGGGCGTGATT
GGGCATTTACTACACGACCGACGCCGCATCAACGTGGCGGTGTCCCGGGC
GAAAAAGAAGCTCATTATTATCGGTTCGGCTTCCACACTTGCCAAGGGTA
TAACAACTTGTGAGTTGGTGGAAATGATGCAGGCGCGCAAATGGGTCCTG
ACTTTGCCCCCGCACGCCCACCATCTCTACGACGAGCACAACCTGGATGC
CATCTCTCTCTTGAGCGCTACGCAATAG back to top
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