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Properties
| Property Name | Value |
|---|
| TranscriptId | 549827 |
| Track | FilteredModels2 |
| ProteinId | 549741 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:89739..92497 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_648 ID=mRNA_648|Name=jgi.p|Nanoce1779_2|549741|organism=Nannochloropsis oceanica|type=mRNA|length=2473bp
ATGGATTTTCGGGAAGCTATCGCGACGTACTACGACCTTAGCATCTCGGG
TATGGCTGCGGAGGGCAAGAAGGACCTGCCTGCGCTCGACACCTTCTGGC
GGACAACCCTCCCAGGGCTGCTTAGGGAGCGACAAAATGAGGACAAGGAA
AAGGCTTGTTGGCTTACTAAAGCCGAGTTAGTGCAAGTTATGCAATGGAA
GCTGACACGGGGTAAGATGCGGCCCTTGATGAACTTGGTGCGGGGAAACG
ACCCCGCGACTGTCAAACGTATCAGCAAAGTAGCCCTTACAGCTGCCCAG
GCCGGCGACATCGCAGGTGCCATCACGCTCCTGTCTGGCCCAGAGCTTAA
GGGAATTGGTCCCGCTACGGCCTCTGCAGTGCTGGCGGCTTATCGCCCTG
AATTGTTTCCTTTCATGGCAGACGAGCCTACCTTGATCGTGCTGGGAGAG
AGTGGTGGGGGCAAACTTAAGTACAACCTGGCTGAATATCTGAAATTCCA
GAAGGCGCTGGTAAAAAAATGTAATGAACTAGACAATGCTGTCAAAGGGA
AGAAGAATGAAATGTCGCCTGGAGAACCATTGACAGCGGACGAGATTGGG
CGGGCGTTGTGGTGTGTCAGTAAGGCAGCTGCCTTAGGATTGCTAGCAGA
CGACAATACGAAAGGTGGGAAGGTCATCAAGAAGCGAAGCGTCGCGAAAG
TGGAAGACGCGGAGGAGCAGAAGAAGAAGAAGAAAGTCGGGGTAGAACAA
TTAGTTCTAGCCAATGGGCCGTCTAAATGAGATTGACAGTATAAATTTAA
ATTATTTGAATTCGCCCTCTTCTAATTCTGCAACCTATCCGTCACTGTTA
CGTCGAGTTTCCTGCATTTTTCTTTTCCTCCCATTGGGCGGGGGTGAGAC
ACTTGAGGGTGATGGCGTGGATGTGCTCCAGCTCGACTGCCAGGGCTTTA
TTAACAGTGCGATGTCGCTGGAGCAACGGTTTGCCTTCAAACATGGAAGA
GACAGTCAGGACCTCGAATTTGGCGCCGCCTAAAGGTGAATGGGGAAAGG
GGAGAATTAAAATAATAATGGGGGACTGCCTGAACTTACTGCCAACATGT
CCTCTGATAATATCATGTCTTGTTCATGGGAGATCGGGATTTTGAGCAAA
CAGCTGATAAAAGAGTGTGAAAGGCCTCTTTATAGGCCGCAACTCAGATT
CTCACCACGGAAGACGCTCGGTCAACACGTCCAGCGCTCCCTCAATAGGC
CGAAACTCAGAGTTTCACCACTGAAGGTGATGGGTCAACACGTCCAGCGC
TCACCCACTCTTGCACCTTCATCCCCGGACAGACTACTTACAGCCATCTG
AGAGGTCTGTTGCCTCCACGTGCACCGCCTGTAAGGCTTCGGTAAGCTTG
CTTTGGATCTGGGAAGGCGTGACAATGGACATGGATTCTGCTCTTCCCTC
CTGTATGTGTTGTGGAAGGATGAGTGCAAATCAGGAGTTAGGTGATATGT
ACGCAAACGTGAGGCGGGGTATTGGCTAAACGAAAGCAGGTCACAACCAA
ATCTACAGCACATCGAACTAAAAAATCCTCCCAGGCGTCAAGCTGCATGT
CCAGCAATCTAGATTGATCCGCTTATCCCCAAAACGGAGATTGCGTCTTC
TTTCCCATGCCATCTCGGATATATCGAAGTTCCGTCTCGGCCTCTTTTCT
CCGTCTTCCACGTGTCTTGAGCAAGGCAGAGTGGCTTCTCCACGCTGCCT
TTTCTGGTCACACAGACCTTTTGATAGCACTCCTTCCCCCAACATGTATT
CCTTACATATCTATATCTACTGACTACAAAGATTGATGTCTCTAGCTCAA
TTCTTATCGAACGAGGGGCATTAGCCACCCACCCCACCCACGCACAAAGA
AAGTTCTCCCTAAATGCACCGCGCAGTCCTCGCGTTGGGAAAAGAGTGTT
CAAGTGAAGGGTGAAGCCTTTCGAACGCATGCATTTGATCTTATATCACA
TATATTGATGCTTAGAGGCCTAGAGTGTTGTTGCTTTGTCCAGAATTCAG
GTTATAATGTCTACCAAAGCCGAATAAGGAAACGCGAACGAGGATGCTTG
AGATCGGGCCTCAGAGTAAAGGGGGTACGCACGCATTATTGCGGATGGTG
TAGGTGTGTGTTTGAGGGAGTGTTTTTGGGTTGTGGTGTCTTTGTCCCAT
TATTGACACACTTTGTGCGTTAAAATAAATGTTTTGTTTGCCACATTGAC
TGTTTGTACGGTGTGGATTTTCTGCTGAGGCCTCAGGGCACTTGTAGCTG
CCTCTCTCCACCAGCAAGGCGACACGGGTCATAGCATCGGCAGCAAGACG
CCGCAGCCCCAGCAAGCACCCAGGGGCATCAAACCCAGCTTAGCCCATCA
ATCTTATGCTCAACAGTATGAGCTTAGGGATCCTTCTTAATGCACATGTT
CCTCTAGCCTCTTTCGACCTAAG back to topprotein sequence of jgi.p|Nanoce1779_2|549741 >mRNA_648-protein ID=mRNA_648-protein|Name=jgi.p|Nanoce1779_2|549741|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MDFREAIATYYDLSISGMAAEGKKDLPALDTFWRTTLPGLLRERQNEDKE
KACWLTKAELVQVMQWKLTRGKMRPLMNLVRGNDPATVKRISKVALTAAQ
AGDIAGAITLLSGPELKGIGPATASAVLAAYRPELFPFMADEPTLIVLGE
SGGGKLKYNLAEYLKFQKALVKKCNELDNAVKGKKNEMSPGEPLTADEIG
RALWCVSKAAALGLLADDNTKGGKVIKKRSVAKVEDAEEQKKKKKVGVEQ
LVLANGPSK* back to topmRNA from alignment at scaffold_2:89739..92497- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_648 ID=mRNA_648|Name=jgi.p|Nanoce1779_2|549741|organism=Nannochloropsis oceanica|type=mRNA|length=2759bp|location=Sequence derived from alignment at scaffold_2:89739..92497- (Nannochloropsis oceanica)
ATGGATTTTCGGGAAGCTATCGCGACGTACTACGACCTTAGCATCTCGGG
TATGGCTGCGGAGGGCAAGAAGGACCTGCCTGCGCTCGACACCTTCTGGC
GGACAACCCTCCCAGGGCTGCTTAGGGAGCGACAAAATGAGGACAAGGAA
AAGGCTTGTTGGCTTACTAAAGCCGAGTTAGTGCAAGTTATGCAATGGAA
GCTGACACGGGGTAAGATGCGGCCCTTGATGAACTTGGTGCGGGGAAACG
ACCCCGCGACTGTCAAACGTATCAGCAAAGTAGCCCTTACAGCTGCCCAG
GCCGGCGACATCGCAGGTGCCATCACGCTCCTGTCTGGCCCAGAGCTTAA
GGGAATTGGTCCCGCTACGGCCTCTGCAGTGCTGGCGGCTTATCGCCCTG
AATTGTTTCCTTTCATGGCAGACGAGCCTACCTTGATCGTGCTGGGAGAG
AGTGGTGGGGGCAAACTTAAGTACAACCTGGCTGAATATCTGAAATTCCA
GAAGGCGCTGGTAAAAAAATGTAATGAACTAGACAATGCTGTCAAAGGGA
AGAAGAATGAAATGTCGCCTGGAGAACCATTGACAGCGGACGAGATTGGG
CGGGCGTTGTGGTGTGTCAGTAAGGCAGCTGCCTTAGGTAAGTCTTTTGT
GGAACGAAAGGTGCACACCCCTCTACACCTCCACCCCCACCCCCATCCAC
TCACCCACCCACACCTACACACCTACACCCATCCCACCTACACCCACACT
CACACTCACACTCACACTCACACACACACACCCGCACCCACACACCCACA
CACCCACACCCACACCCAAATATACATATATATATATATATATATATATA
TATATATATATATATGTATATATATATATATATATATATATGTATATATA
TATACATATGTAAATTGCTAAAGGATTGCTAGCAGACGACAATACGAAAG
GTGGGAAGGTCATCAAGAAGCGAAGCGTCGCGAAAGTGGAAGACGCGGAG
GAGCAGAAGAAGAAGAAGAAAGTCGGGGTAGAACAATTAGTTCTAGCCAA
TGGGCCGTCTAAATGAGATTGACAGTATAAATTTAAATTATTTGAATTCG
CCCTCTTCTAATTCTGCAACCTATCCGTCACTGTTACGTCGAGTTTCCTG
CATTTTTCTTTTCCTCCCATTGGGCGGGGGTGAGACACTTGAGGGTGATG
GCGTGGATGTGCTCCAGCTCGACTGCCAGGGCTTTATTAACAGTGCGATG
TCGCTGGAGCAACGGTTTGCCTTCAAACATGGAAGAGACAGTCAGGACCT
CGAATTTGGCGCCGCCTAAAGGTGAATGGGGAAAGGGGAGAATTAAAATA
ATAATGGGGGACTGCCTGAACTTACTGCCAACATGTCCTCTGATAATATC
ATGTCTTGTTCATGGGAGATCGGGATTTTGAGCAAACAGCTGATAAAAGA
GTGTGAAAGGCCTCTTTATAGGCCGCAACTCAGATTCTCACCACGGAAGA
CGCTCGGTCAACACGTCCAGCGCTCCCTCAATAGGCCGAAACTCAGAGTT
TCACCACTGAAGGTGATGGGTCAACACGTCCAGCGCTCACCCACTCTTGC
ACCTTCATCCCCGGACAGACTACTTACAGCCATCTGAGAGGTCTGTTGCC
TCCACGTGCACCGCCTGTAAGGCTTCGGTAAGCTTGCTTTGGATCTGGGA
AGGCGTGACAATGGACATGGATTCTGCTCTTCCCTCCTGTATGTGTTGTG
GAAGGATGAGTGCAAATCAGGAGTTAGGTGATATGTACGCAAACGTGAGG
CGGGGTATTGGCTAAACGAAAGCAGGTCACAACCAAATCTACAGCACATC
GAACTAAAAAATCCTCCCAGGCGTCAAGCTGCATGTCCAGCAATCTAGAT
TGATCCGCTTATCCCCAAAACGGAGATTGCGTCTTCTTTCCCATGCCATC
TCGGATATATCGAAGTTCCGTCTCGGCCTCTTTTCTCCGTCTTCCACGTG
TCTTGAGCAAGGCAGAGTGGCTTCTCCACGCTGCCTTTTCTGGTCACACA
GACCTTTTGATAGCACTCCTTCCCCCAACATGTATTCCTTACATATCTAT
ATCTACTGACTACAAAGATTGATGTCTCTAGCTCAATTCTTATCGAACGA
GGGGCATTAGCCACCCACCCCACCCACGCACAAAGAAAGTTCTCCCTAAA
TGCACCGCGCAGTCCTCGCGTTGGGAAAAGAGTGTTCAAGTGAAGGGTGA
AGCCTTTCGAACGCATGCATTTGATCTTATATCACATATATTGATGCTTA
GAGGCCTAGAGTGTTGTTGCTTTGTCCAGAATTCAGGTTATAATGTCTAC
CAAAGCCGAATAAGGAAACGCGAACGAGGATGCTTGAGATCGGGCCTCAG
AGTAAAGGGGGTACGCACGCATTATTGCGGATGGTGTAGGTGTGTGTTTG
AGGGAGTGTTTTTGGGTTGTGGTGTCTTTGTCCCATTATTGACACACTTT
GTGCGTTAAAATAAATGTTTTGTTTGCCACATTGACTGTTTGTACGGTGT
GGATTTTCTGCTGAGGCCTCAGGGCACTTGTAGCTGCCTCTCTCCACCAG
CAAGGCGACACGGGTCATAGCATCGGCAGCAAGACGCCGCAGCCCCAGCA
AGCACCCAGGGGCATCAAACCCAGCTTAGCCCATCAATCTTATGCTCAAC
AGTATGAGCTTAGGGATCCTTCTTAATGCACATGTTCCTCTAGCCTCTTT
CGACCTAAG back to topCoding sequence (CDS) from alignment at scaffold_2:89739..92497- >mRNA_648 ID=mRNA_648|Name=jgi.p|Nanoce1779_2|549741|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_2:89739..92497- (Nannochloropsis oceanica)
GATTGCTAGCAGACGACAATACGAAAGGTGGGAAGGTCATCAAGAAGCGA
AGCGTCGCGAAAGTGGAAGACGCGGAGGAGCAGAAGAAGAAGAAGAAAGT
CGGGGTAGAACAATTAGTTCTAGCCAATGGGCCGTCTAAATGAATGGATT
TTCGGGAAGCTATCGCGACGTACTACGACCTTAGCATCTCGGGTATGGCT
GCGGAGGGCAAGAAGGACCTGCCTGCGCTCGACACCTTCTGGCGGACAAC
CCTCCCAGGGCTGCTTAGGGAGCGACAAAATGAGGACAAGGAAAAGGCTT
GTTGGCTTACTAAAGCCGAGTTAGTGCAAGTTATGCAATGGAAGCTGACA
CGGGGTAAGATGCGGCCCTTGATGAACTTGGTGCGGGGAAACGACCCCGC
GACTGTCAAACGTATCAGCAAAGTAGCCCTTACAGCTGCCCAGGCCGGCG
ACATCGCAGGTGCCATCACGCTCCTGTCTGGCCCAGAGCTTAAGGGAATT
GGTCCCGCTACGGCCTCTGCAGTGCTGGCGGCTTATCGCCCTGAATTGTT
TCCTTTCATGGCAGACGAGCCTACCTTGATCGTGCTGGGAGAGAGTGGTG
GGGGCAAACTTAAGTACAACCTGGCTGAATATCTGAAATTCCAGAAGGCG
CTGGTAAAAAAATGTAATGAACTAGACAATGCTGTCAAAGGGAAGAAGAA
TGAAATGTCGCCTGGAGAACCATTGACAGCGGACGAGATTGGGCGGGCGT
TGTGGTGTGTCAGTAAGGCAGCTGCCTTAGGATTGCTAGCAGACGACAAT
ACGAAAGGTGGGAAGGTCATCAAGAAGCGAAGCGTCGCGAAAGTGGAAGA
CGCGGAGGAGCAGAAGAAGAAGAAGAAAGTCGGGGTAGAACAATTAGTTC
TAGCCAATGGGCCGTCTAAATGAATGGATTTTCGGGAAGCTATCGCGACG
TACTACGACCTTAGCATCTCGGGTATGGCTGCGGAGGGCAAGAAGGACCT
GCCTGCGCTCGACACCTTCTGGCGGACAACCCTCCCAGGGCTGCTTAGGG
AGCGACAAAATGAGGACAAGGAAAAGGCTTGTTGGCTTACTAAAGCCGAG
TTAGTGCAAGTTATGCAATGGAAGCTGACACGGGGTAAGATGCGGCCCTT
GATGAACTTGGTGCGGGGAAACGACCCCGCGACTGTCAAACGTATCAGCA
AAGTAGCCCTTACAGCTGCCCAGGCCGGCGACATCGCAGGTGCCATCACG
CTCCTGTCTGGCCCAGAGCTTAAGGGAATTGGTCCCGCTACGGCCTCTGC
AGTGCTGGCGGCTTATCGCCCTGAATTGTTTCCTTTCATGGCAGACGAGC
CTACCTTGATCGTGCTGGGAGAGAGTGGTGGGGGCAAACTTAAGTACAAC
CTGGCTGAATATCTGAAATTCCAGAAGGCGCTGGTAAAAAAATGTAATGA
ACTAGACAATGCTGTCAAAGGGAAGAAGAATGAAATGTCGCCTGGAGAAC
CATTGACAGCGGACGAGATTGGGCGGGCGTTGTGGTGTGTCAGTAAGGCA
GCTGCCTTAG back to top
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