jgi.p|Nanoce1779_2|595187, mRNA_6479 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595187
Unique Name	mRNA_6479
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2091
Alignment location	scaffold_15:768876..770966 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595273
Track	FilteredModels2
ProteinId	595187

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:768876..770966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595187	gene_6479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595187	mRNA_6479-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6479	CDS_6479	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:768876..770966+
coding sequence from alignment at scaffold_15:768876..770966+

mRNA sequence

>mRNA_6479 ID=mRNA_6479|Name=jgi.p|Nanoce1779_2|595187|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp
ATGAAACATGCCCTCCTCCTCCTCATCATCATCATCATCACCATCATAAT
CCTCCTCCTTCTCCTCCTCCTCCTCCCCATCCTCCTCTTCCTCTTCTTCA
TCTTCCTCTTTTCTCTTCTTCTTCTTTTTCTTGTCCTTCCCCCTAAGCCC
TCCAACCTCATGCCCCACAATGTGTAGTTGGCAGATTGAACGCCTCAGTC
TGCACCGTTGCAAGTTAGAGCTTCCATCCCCATTGAATTTCAGGATCACA
TTTGCACCGAAAGACCGTGCAGCCTCATCGTGCGCGTAGGCAGCTGACAG
AGGGTCAAGATTATCCCAATGTAGTACTGGGCCCAATTGTCGTACACTAC
CACCGACCACTTATTGTTGCTTAAGCTGCTGGGTCATTCTCTCCTTCCCG
CGTGGCATAATATTGCATCGCACGTTTTACTTTAAGGGGGATGTCCGCAT
TCGGTTCAGTTGTCGTTGATGTCAGCATGTGATACAAGAATGCGTCATAG
GCGTCTTCCTTTCCCTGGTACTTTCGTCGAAGCTTTTGCAAATAGTGAAA
GTCTTTGGTGTTGAAGTGAAGATGGTTCATGATTGTTTGTTTTGTTTTGG
TCCAAGATAATTTCCAACTTCAGGGAGACGTAATGATTTGCATGGTTTCA
TACTTGCCCGTTCCCTCGTTCATTTTCTCAAAGCACAAGCTCGAGGTTTG
CGAATCGACCGATATTCTCCACACGTTCCCGATTTCGAGTCCCAATGCCG
TGTGGACAATGCCCGAGAAGGAAGATTTCTCGGCTGTCAAGGACACGGCC
GTGGTAAGTGCTTGAGAAACGGGAGATACTCCTCCCCCCCCGCCCCAAAA
CAGACCGTTCACGGTCGCCGGGAAAGCTACCTTCGGCACCGCCGTCTTTC
AGCGGCCCCTGTTTTTGTCGTCCAATGCGTATGTCGGCAATGTGCTCGAT
ACGCACATGGCATTGACTACCGGGGGCAATATCAATTTCCAACAAAATAC
AACCGCATACGACGCCCGCGTCTCTAGCTCCACACACACAGCACTTACCT
TTAGTGCCAACACTTACACGCATGTCGGGTCATCGTTCAACGCGAAGAAT
GGCGTGTCGAAAGGCAGGGTAGGGTACCTTTCGTATCCACTGTACCCCGC
AATAGCGGTCAGCGGCGGGGCTCGGCGAGAGTACGGGATTTCGCGGCGAT
GCTGGAGCGGGAAAGTTCCCAAGATAAATGGAAGCTTCCTCTTGCGTTGT
CACGGGAACGGGGCGTATCCACTCTATGGCACGTACAACGTCTTTTACGC
AACCAAAAGCGGAACCTTTGATCATAAACGGGCCATGTGTATGCGAGGCG
ACAATGTGCGAAAAGGTCAAACCAATGGCATGACATGGAACGTCCTGTCG
ACTGTCTCGTCCAACACGAGTGGGTTACGCGTAGCATTTGCGTCCAGCGA
TTGGCTCCCAACAATCACTTTCACCAATACCACTGGAGTGCATGCCTCAG
CGTGCATGCCAATGTTTTCGACGACACGACCGTTTTCAACGAACCGGGCG
TGTAAATGGAACGCGATGCTGCTGCGGTGATCGATTCTTCACATTTGTCG
TCAGAATCTACCATCATACAGCTCTCAGACGATCCGTAGCCGACATTTTC
ATCCACATGCGTGGCACATGCGGTACTTACCTTTGCTGGCCTCTTCTCAT
GCTGGAGCTGCTTGCTTGCTGCATGTCGAACAGTGCGAGCCTTGGCTGCC
TGCCATTAAAAGGAAATTGACGACACTTCCATGCAAAGAAAGCAAACAAA
GGTATAGAATACCAGACATGTGGAAGAACGCTGCAAGTTGGGGCATGTAA
AATGATATAATTGCGAGGGGATACTTGTCACAGTAAGCAGTGTGGCGTCA
GGCAAAGAGGGGAGGTCTAAGGGGAGCGAGTCGTTTCCGCCCGTGTGGCG
GGTAGTGAGCCTCAGAAACAGCGCTGACGGTGGTCAGGGAGAGTGAGAAA
GCAACTGCCAACAAAGCAAGCAACAAAGTCGCTTTTGGTTCCCCCCCTTT
TGATTTTCTTTCACGTATTGCTTGATTTTCCTGGACAAAAG

protein sequence of jgi.p|Nanoce1779_2|595187

>mRNA_6479-protein ID=mRNA_6479-protein|Name=jgi.p|Nanoce1779_2|595187|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MALTTGGNINFQQNTTAYDARVSSSTHTALTFSANTYTHVGSSFNAKNGV
SKGRVGYLSYPLYPAIAVSGGARREYGISRRCWSGKVPKINGSFLLRCHG
NGAYPLYGTYNVFYATKSGTFDHKRAMCMRGDNVRKGQTNGMTWNVLSTV
SSNTSGLRVAFASSDWLPTITFTNTTGVHASACMPMFSTTRPFSTNRACK
WNAMLLR*

mRNA from alignment at scaffold_15:768876..770966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6479 ID=mRNA_6479|Name=jgi.p|Nanoce1779_2|595187|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at scaffold_15:768876..770966+ (Nannochloropsis oceanica)
ATGAAACATGCCCTCCTCCTCCTCATCATCATCATCATCACCATCATAAT
CCTCCTCCTTCTCCTCCTCCTCCTCCCCATCCTCCTCTTCCTCTTCTTCA
TCTTCCTCTTTTCTCTTCTTCTTCTTTTTCTTGTCCTTCCCCCTAAGCCC
TCCAACCTCATGCCCCACAATGTGTAGTTGGCAGATTGAACGCCTCAGTC
TGCACCGTTGCAAGTTAGAGCTTCCATCCCCATTGAATTTCAGGATCACA
TTTGCACCGAAAGACCGTGCAGCCTCATCGTGCGCGTAGGCAGCTGACAG
AGGGTCAAGATTATCCCAATGTAGTACTGGGCCCAATTGTCGTACACTAC
CACCGACCACTTATTGTTGCTTAAGCTGCTGGGTCATTCTCTCCTTCCCG
CGTGGCATAATATTGCATCGCACGTTTTACTTTAAGGGGGATGTCCGCAT
TCGGTTCAGTTGTCGTTGATGTCAGCATGTGATACAAGAATGCGTCATAG
GCGTCTTCCTTTCCCTGGTACTTTCGTCGAAGCTTTTGCAAATAGTGAAA
GTCTTTGGTGTTGAAGTGAAGATGGTTCATGATTGTTTGTTTTGTTTTGG
TCCAAGATAATTTCCAACTTCAGGGAGACGTAATGATTTGCATGGTTTCA
TACTTGCCCGTTCCCTCGTTCATTTTCTCAAAGCACAAGCTCGAGGTTTG
CGAATCGACCGATATTCTCCACACGTTCCCGATTTCGAGTCCCAATGCCG
TGTGGACAATGCCCGAGAAGGAAGATTTCTCGGCTGTCAAGGACACGGCC
GTGGTAAGTGCTTGAGAAACGGGAGATACTCCTCCCCCCCCGCCCCAAAA
CAGACCGTTCACGGTCGCCGGGAAAGCTACCTTCGGCACCGCCGTCTTTC
AGCGGCCCCTGTTTTTGTCGTCCAATGCGTATGTCGGCAATGTGCTCGAT
ACGCACATGGCATTGACTACCGGGGGCAATATCAATTTCCAACAAAATAC
AACCGCATACGACGCCCGCGTCTCTAGCTCCACACACACAGCACTTACCT
TTAGTGCCAACACTTACACGCATGTCGGGTCATCGTTCAACGCGAAGAAT
GGCGTGTCGAAAGGCAGGGTAGGGTACCTTTCGTATCCACTGTACCCCGC
AATAGCGGTCAGCGGCGGGGCTCGGCGAGAGTACGGGATTTCGCGGCGAT
GCTGGAGCGGGAAAGTTCCCAAGATAAATGGAAGCTTCCTCTTGCGTTGT
CACGGGAACGGGGCGTATCCACTCTATGGCACGTACAACGTCTTTTACGC
AACCAAAAGCGGAACCTTTGATCATAAACGGGCCATGTGTATGCGAGGCG
ACAATGTGCGAAAAGGTCAAACCAATGGCATGACATGGAACGTCCTGTCG
ACTGTCTCGTCCAACACGAGTGGGTTACGCGTAGCATTTGCGTCCAGCGA
TTGGCTCCCAACAATCACTTTCACCAATACCACTGGAGTGCATGCCTCAG
CGTGCATGCCAATGTTTTCGACGACACGACCGTTTTCAACGAACCGGGCG
TGTAAATGGAACGCGATGCTGCTGCGGTGATCGATTCTTCACATTTGTCG
TCAGAATCTACCATCATACAGCTCTCAGACGATCCGTAGCCGACATTTTC
ATCCACATGCGTGGCACATGCGGTACTTACCTTTGCTGGCCTCTTCTCAT
GCTGGAGCTGCTTGCTTGCTGCATGTCGAACAGTGCGAGCCTTGGCTGCC
TGCCATTAAAAGGAAATTGACGACACTTCCATGCAAAGAAAGCAAACAAA
GGTATAGAATACCAGACATGTGGAAGAACGCTGCAAGTTGGGGCATGTAA
AATGATATAATTGCGAGGGGATACTTGTCACAGTAAGCAGTGTGGCGTCA
GGCAAAGAGGGGAGGTCTAAGGGGAGCGAGTCGTTTCCGCCCGTGTGGCG
GGTAGTGAGCCTCAGAAACAGCGCTGACGGTGGTCAGGGAGAGTGAGAAA
GCAACTGCCAACAAAGCAAGCAACAAAGTCGCTTTTGGTTCCCCCCCTTT
TGATTTTCTTTCACGTATTGCTTGATTTTCCTGGACAAAAG

Coding sequence (CDS) from alignment at scaffold_15:768876..770966+

>mRNA_6479 ID=mRNA_6479|Name=jgi.p|Nanoce1779_2|595187|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_15:768876..770966+ (Nannochloropsis oceanica)
ATGGCATTGACTACCGGGGGCAATATCAATTTCCAACAAAATACAACCGC
ATACGACGCCCGCGTCTCTAGCTCCACACACACAGCACTTACCTTTAGTG
CCAACACTTACACGCATGTCGGGTCATCGTTCAACGCGAAGAATGGCGTG
TCGAAAGGCAGGGTAGGGTACCTTTCGTATCCACTGTACCCCGCAATAGC
GGTCAGCGGCGGGGCTCGGCGAGAGTACGGGATTTCGCGGCGATGCTGGA
GCGGGAAAGTTCCCAAGATAAATGGAAGCTTCCTCTTGCGTTGTCACGGG
AACGGGGCGTATCCACTCTATGGCACGTACAACGTCTTTTACGCAACCAA
AAGCGGAACCTTTGATCATAAACGGGCCATGTGTATGCGAGGCGACAATG
TGCGAAAAGGTCAAACCAATGGCATGACATGGAACGTCCTGTCGACTGTC
TCGTCCAACACGAGTGGGTTACGCGTAGCATTTGCGTCCAGCGATTGGCT
CCCAACAATCACTTTCACCAATACCACTGGAGTGCATGCCTCAGCGTGCA
TGCCAATGTTTTCGACGACACGACCGTTTTCAACGAACCGGGCGTGTAAA
TGGAACGCGATGCTGCTGCGGTGA

Synonyms

Publications