jgi.p|Nanoce1779_2|595185, mRNA_6478 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595185
Unique NamemRNA_6478
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length394
Alignment locationscaffold_15:768600..768993 -

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Properties
Property NameValue
TranscriptId595271
TrackFilteredModels2
ProteinId595185
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:768600..768993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595185gene_6478Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595185mRNA_6478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6478CDS_6478Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6478 ID=mRNA_6478|Name=jgi.p|Nanoce1779_2|595185|organism=Nannochloropsis oceanica|type=mRNA|length=394bp
GAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGGATGGGGAGGAGG
AGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGATGATGATGAGGAG
GAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCGGGAAAAATCTGG
CCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCCGCTGTGATGTGG
CTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCTATACGATGCGCC
ACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGACGGGAGCCATATT
GGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTCTTGAAGTCGGTC
GTGACGAAGTACTCATCCTCCTGCAGATCAACCATCAAATCAGC
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protein sequence of jgi.p|Nanoce1779_2|595185

>mRNA_6478-protein ID=mRNA_6478-protein|Name=jgi.p|Nanoce1779_2|595185|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MKKRKRRMGRRRRRRRRIMMVMMMMMRRRRACFIPAHVFLGKNLALLQAR
EPRDGSSAVMWLTQVEGAGFLWRLYDAPQGQLQLL*
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mRNA from alignment at scaffold_15:768600..768993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6478 ID=mRNA_6478|Name=jgi.p|Nanoce1779_2|595185|organism=Nannochloropsis oceanica|type=mRNA|length=394bp|location=Sequence derived from alignment at scaffold_15:768600..768993- (Nannochloropsis oceanica)
GAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGGATGGGGAGGAGG
AGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGATGATGATGAGGAG
GAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCGGGAAAAATCTGG
CCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCCGCTGTGATGTGG
CTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCTATACGATGCGCC
ACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGACGGGAGCCATATT
GGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTCTTGAAGTCGGTC
GTGACGAAGTACTCATCCTCCTGCAGATCAACCATCAAATCAGC
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Coding sequence (CDS) from alignment at scaffold_15:768600..768993-

>mRNA_6478 ID=mRNA_6478|Name=jgi.p|Nanoce1779_2|595185|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_15:768600..768993- (Nannochloropsis oceanica)
ATGAAGAAGAGGAAGAGGAGGATGGGGAGGAGGAGGAGGAGAAGGAGGAG
GATTATGATGGTGATGATGATGATGATGAGGAGGAGGAGGGCATGTTTCA
TTCCTGCACATGTTTTTCTCGGGAAAAATCTGGCCTTACTGCAGGCCCGG
GAACCAAGAGACGGAAGTTCCGCTGTGATGTGGCTGACTCAAGTGGAAGG
AGCGGGGTTTCTATGGCGCCTATACGATGCGCCACAGGGCCAATTGCAAC
TCCTTTGA
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Synonyms
Publications