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Properties
| Property Name | Value |
|---|
| TranscriptId | 595259 |
| Track | FilteredModels2 |
| ProteinId | 595173 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:755594..757567 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6475 ID=mRNA_6475|Name=jgi.p|Nanoce1779_2|595173|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
CAGGGTAACGAGAACAGGGGGACGAGAACGCGCGGCAAGGGCGAGCGTCA
ATAGAGGCAACCAGCTACCATGTTTCGTAACACTTTTCAGTCAGGCTTTC
TATCCATCCTCTACTCTCTGGGCAACAAACCCCTCCAACTCTGGGATAAG
GCATTGTACAACGGCAGCCTCAAGCGTCTAGCCGACGAAGACGTTTCCTC
CGGTGTCCTGGAGCTTGTAGGGGAGAATGTTGCGGATAATTTCATCACCT
GCCCTGCCGACTCCAAGAAACAGCTGGGGATAAAGCTGCCATTTATAGTG
TTAGTCCTCAAGAATCTCCACAAATACTTCACCTTCGAAATCCAAGTCCT
GGACGATAAGGGAGTTAAACGCCGACTGCGTGCCTCCAACTTCCAGTCCA
CCACCCGGGTAAAGCCCCTCATCTGCACAATGCCTCTCCGCCTCGACGAG
GGCTGGAATCACGTCCAGCTCAATCTGCCGGACATTCTGCGCAGGGCCTA
CGGCACCACTTACGTCGAAACCCTCCGAGTGCAGATCCACGCCAACTGTC
GCCTCCGTCGGGTGTTCTTCGCCGAACGTCAATGCGCGGAGGATGAGCTT
CCTCCGGAATTCAGGCTCTTCCAACCCATCAAAAAAGCAACCACTCATTC
TTCCTCCCAGCAGCAGGAGGAAAAGGAGGAGGAACGGCAGCGGCAGCAGC
AGCGAGAAGCTTTCGATAGGCTAGGCGGCGATATGGACTATAACCCTGCC
TGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGTGGGAGAAA
CCGATGCACATACACGGACATATAGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|595173 >mRNA_6475-protein ID=mRNA_6475-protein|Name=jgi.p|Nanoce1779_2|595173|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MFRNTFQSGFLSILYSLGNKPLQLWDKALYNGSLKRLADEDVSSGVLELV
GENVADNFITCPADSKKQLGIKLPFIVLVLKNLHKYFTFEIQVLDDKGVK
RRLRASNFQSTTRVKPLICTMPLRLDEGWNHVQLNLPDILRRAYGTTYVE
TLRVQIHANCRLRRVFFAERQCAEDELPPEFRLFQPIKKATTHSSSQQQE
EKEEERQRQQQREAFDRLGGDMDYNPA* back to topmRNA from alignment at scaffold_15:755594..757567+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6475 ID=mRNA_6475|Name=jgi.p|Nanoce1779_2|595173|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp|location=Sequence derived from alignment at scaffold_15:755594..757567+ (Nannochloropsis oceanica)
CAGGGTAACGAGAACAGGGGGACGAGAACGCGCGGCAAGGGCGAGCGTCA
ATAGAGGCAACCAGCTACCATGTTTCGTAACACTTTTCAGTCAGGCTTTC
TATCCATCCTCTACTCTCTGGGGTAAGTCTTATGCCCCTGCCTTGCTAAT
GCCATGAATGGCGTGAAGGACGGGAAGGAGAAATGAAGGCAAGGACTGAA
GGGTTAAAACATTGGAGATCTTGAAGCTTCGTAGCATAAGGCTTATCGGG
TAGTGCGTCTTCATTTTGGCCGTGCCTTACTCCCTCTCCTCTCTCCCGTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCAAGCAACAAACCCC
TCCAACTCTGGGATAAGGCATTGTACAACGGCAGCCTCAAGCGTCTAGCC
GACGAAGACGTTTCCTCCGGTGTCCTGGAGCTTGTAGGGGAGAATGTTGC
GGATAATTTCATCACCTGCCCTGCCGACTCCAAGAAACAGCTGGGGATAA
AGCTGCCATTTATAGTGTTAGTCCTCAAGAATGTGAGTCCTTTTAAAAAT
ATGAACAGCCCCTGTCTCCCTGTCAGTCGTACCGTCATTCGTCTTAACCT
TCATGTCGCCTTCTCCTCGTTTCTCTCTTCCTCTTCCTCTGGTTTCCTGA
TCTCACTCGCCTGAATGTCTCTCCCTCTCTCTCTCTCCCTCCCTCCCTGC
TCCCCCTCTCATTTAGCTCCACAAATACTTCACCTTCGAAATCCAAGTCC
TGGACGATAAGGGAGTTAAACGCCGACTGCGTGCCTCCAACTTCCAGGTA
AAGGATGCCCTTCCCTCCCTCCCTCCCTCCTCCCCTCCCTTCCCACTCCC
AGCCTCCTTTACATCCTTACTCCTTTTCTCTACAAACATCTCTTGCGTGC
ATATCCCTTTCCGTCGTTCTAAACCCCCGCCCTCCCGTCCCTCCCTCCCT
CCCTCCCTCAGTCCACCACCCGGGTAAAGCCCCTCATCTGCACAATGCCT
CTCCGCCTCGACGAGGTACGTCCTGCTTCCCTCCCTCCATCCCTCCATCT
TGTGAGCACCACCATAACGCATGTTCCCTTTCCTTGCCCTGCTTCCCTCC
ATACATACATCCCTCCCTCCCACCCTCCCTATATCGCTGCAGGGCTGGAA
TCACGTCCAGCTCAATCTGCCGGACATTCTGCGCAGGGCCTACGGCACCA
CTTACGTCGAAACCCTCCGAGTGCAGGTACCTCCCTCCCTCCCTTCCTCC
CTCCCTTCCTCTCTTTCTTCCTTCCTTAGTCTCTGTTCGTGTGGCGCCCC
CTCCCTCCCTCCCTCCCTCCCTCGATTCAAAACGTCTGCGCCGACGGATC
CCACCTCTTCTCCTTCCCCAGCTTTCCCTTGTTCACTTCCTCCCCCTCCT
CCCTCCCTACCTCCCTCCCTCCGTCCGAAGATCCACGCCAACTGTCGCCT
CCGTCGGGTGTTCTTCGCCGAACGTCAATGCGCGGAGGATGAGCTTCCTC
CGGAATTCAGGCTCTTCCAACCCATCAAAAAGTAAGTTTGGATTTCCCGC
CTTCCCGCCCTCCTTCCTGCCCTTCCTTCCACCTCTCCTTTACCCCAGAA
AGAGTATTTACATGCCATTCCTTGTTCCCTCCCTCCCTCCTTCCCTCCCT
CCCTTCCTCCCTCTCTCACCTTCTCCCTTTCCCCCCCCCTTGAGATTGTC
GCTTTCCTTCTAACCCGGTTACCCTCCCTCCCTCCTTCCTTCCTTCCCTC
GTCACCAAACCACTCTAACAACCAACCACAGAGCAACCACTCATTCTTCC
TCCCAGCAGCAGGAGGAAAAGGAGGAGGAACGGCAGCGGCAGCAGCAGCG
AGAAGCTTTCGATAGGCTAGGCGGCGATATGGACTATAACCCTGCCTGAG
GGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGTGGGAGAAACCGA
TGCACATACACGGACATATAGGGA back to topCoding sequence (CDS) from alignment at scaffold_15:755594..757567+ >mRNA_6475 ID=mRNA_6475|Name=jgi.p|Nanoce1779_2|595173|organism=Nannochloropsis oceanica|type=CDS|length=4788bp|location=Sequence derived from alignment at scaffold_15:755594..757567+ (Nannochloropsis oceanica)
ATGTTTCGTAACACTTTTCAGTCAGGCTTTCTATCCATCCTCTACTCTCT
GGGCAACAAACCCCTCCAACTCTGGGATAAGGCATTGTACAACGGCAGCC
TCAAGCGTCTAGCCGACGAAGACGTTTCCTCCGGTGTCCTGGAGCTTGTA
GGGGAGAATGTTGCGGATAATTTCATCACCTGCCCTGCCGACTCCAAGAA
ACAGCTGGGGATAAAGCTGCCATTTATAGTGTTAGTCCTCAAGAATCTCC
ACAAATACTTCACCTTCGAAATCCAAGTCCTGGACGATAAGGGAGTTAAA
CGCCGACTGCGTGCCTCCAACTTCCAGTCCACCACCCGGGTAAAGCCCCT
CATCTGCACAATGCCTCTCCGCCTCGACGAGGGCTGGAATCACGTCCAGC
TCAATCTGCCGGACATTCTGCGCAGGGCCTACGGCACCACTTACGTCGAA
ACCCTCCGAGTGCAGATCCACGCCAACTGTCGCCTCCGTCGGGTGTTCTT
CGCCGAACGTCAATGCGCGGAGGATGAGCTTCCTCCGGAATTCAGGCTCT
TCCAACCCATCAAAAAAGCAACCACTCATTCTTCCTCCCAGCAGCAGGAG
GAAAAGGAGGAGGAACGGCAGCGGCAGCAGCAGCGAGAAGCTTTCGATAG
GCTAGGCGGCGATATGGACTATAACCCTGCCTGAATGTTTCGTAACACTT
TTCAGTCAGGCTTTCTATCCATCCTCTACTCTCTGGGCAACAAACCCCTC
CAACTCTGGGATAAGGCATTGTACAACGGCAGCCTCAAGCGTCTAGCCGA
CGAAGACGTTTCCTCCGGTGTCCTGGAGCTTGTAGGGGAGAATGTTGCGG
ATAATTTCATCACCTGCCCTGCCGACTCCAAGAAACAGCTGGGGATAAAG
CTGCCATTTATAGTGTTAGTCCTCAAGAATCTCCACAAATACTTCACCTT
CGAAATCCAAGTCCTGGACGATAAGGGAGTTAAACGCCGACTGCGTGCCT
CCAACTTCCAGTCCACCACCCGGGTAAAGCCCCTCATCTGCACAATGCCT
CTCCGCCTCGACGAGGGCTGGAATCACGTCCAGCTCAATCTGCCGGACAT
TCTGCGCAGGGCCTACGGCACCACTTACGTCGAAACCCTCCGAGTGCAGA
TCCACGCCAACTGTCGCCTCCGTCGGGTGTTCTTCGCCGAACGTCAATGC
GCGGAGGATGAGCTTCCTCCGGAATTCAGGCTCTTCCAACCCATCAAAAA
AGCAACCACTCATTCTTCCTCCCAGCAGCAGGAGGAAAAGGAGGAGGAAC
GGCAGCGGCAGCAGCAGCGAGAAGCTTTCGATAGGCTAGGCGGCGATATG
GACTATAACCCTGCCTGAATGTTTCGTAACACTTTTCAGTCAGGCTTTCT
ATCCATCCTCTACTCTCTGGGCAACAAACCCCTCCAACTCTGGGATAAGG
CATTGTACAACGGCAGCCTCAAGCGTCTAGCCGACGAAGACGTTTCCTCC
GGTGTCCTGGAGCTTGTAGGGGAGAATGTTGCGGATAATTTCATCACCTG
CCCTGCCGACTCCAAGAAACAGCTGGGGATAAAGCTGCCATTTATAGTGT
TAGTCCTCAAGAATCTCCACAAATACTTCACCTTCGAAATCCAAGTCCTG
GACGATAAGGGAGTTAAACGCCGACTGCGTGCCTCCAACTTCCAGTCCAC
CACCCGGGTAAAGCCCCTCATCTGCACAATGCCTCTCCGCCTCGACGAGG
GCTGGAATCACGTCCAGCTCAATCTGCCGGACATTCTGCGCAGGGCCTAC
GGCACCACTTACGTCGAAACCCTCCGAGTGCAGATCCACGCCAACTGTCG
CCTCCGTCGGGTGTTCTTCGCCGAACGTCAATGCGCGGAGGATGAGCTTC
CTCCGGAATTCAGGCTCTTCCAACCCATCAAAAAAGCAACCACTCATTCT
TCCTCCCAGCAGCAGGAGGAAAAGGAGGAGGAACGGCAGCGGCAGCAGCA
GCGAGAAGCTTTCGATAGGCTAGGCGGCGATATGGACTATAACCCTGCCT
GAATGTTTCGTAACACTTTTCAGTCAGGCTTTCTATCCATCCTCTACTCT
CTGGGCAACAAACCCCTCCAACTCTGGGATAAGGCATTGTACAACGGCAG
CCTCAAGCGTCTAGCCGACGAAGACGTTTCCTCCGGTGTCCTGGAGCTTG
TAGGGGAGAATGTTGCGGATAATTTCATCACCTGCCCTGCCGACTCCAAG
AAACAGCTGGGGATAAAGCTGCCATTTATAGTGTTAGTCCTCAAGAATCT
CCACAAATACTTCACCTTCGAAATCCAAGTCCTGGACGATAAGGGAGTTA
AACGCCGACTGCGTGCCTCCAACTTCCAGTCCACCACCCGGGTAAAGCCC
CTCATCTGCACAATGCCTCTCCGCCTCGACGAGGGCTGGAATCACGTCCA
GCTCAATCTGCCGGACATTCTGCGCAGGGCCTACGGCACCACTTACGTCG
AAACCCTCCGAGTGCAGATCCACGCCAACTGTCGCCTCCGTCGGGTGTTC
TTCGCCGAACGTCAATGCGCGGAGGATGAGCTTCCTCCGGAATTCAGGCT
CTTCCAACCCATCAAAAAAGCAACCACTCATTCTTCCTCCCAGCAGCAGG
AGGAAAAGGAGGAGGAACGGCAGCGGCAGCAGCAGCGAGAAGCTTTCGAT
AGGCTAGGCGGCGATATGGACTATAACCCTGCCTGAATGTTTCGTAACAC
TTTTCAGTCAGGCTTTCTATCCATCCTCTACTCTCTGGGCAACAAACCCC
TCCAACTCTGGGATAAGGCATTGTACAACGGCAGCCTCAAGCGTCTAGCC
GACGAAGACGTTTCCTCCGGTGTCCTGGAGCTTGTAGGGGAGAATGTTGC
GGATAATTTCATCACCTGCCCTGCCGACTCCAAGAAACAGCTGGGGATAA
AGCTGCCATTTATAGTGTTAGTCCTCAAGAATCTCCACAAATACTTCACC
TTCGAAATCCAAGTCCTGGACGATAAGGGAGTTAAACGCCGACTGCGTGC
CTCCAACTTCCAGTCCACCACCCGGGTAAAGCCCCTCATCTGCACAATGC
CTCTCCGCCTCGACGAGGGCTGGAATCACGTCCAGCTCAATCTGCCGGAC
ATTCTGCGCAGGGCCTACGGCACCACTTACGTCGAAACCCTCCGAGTGCA
GATCCACGCCAACTGTCGCCTCCGTCGGGTGTTCTTCGCCGAACGTCAAT
GCGCGGAGGATGAGCTTCCTCCGGAATTCAGGCTCTTCCAACCCATCAAA
AAAGCAACCACTCATTCTTCCTCCCAGCAGCAGGAGGAAAAGGAGGAGGA
ACGGCAGCGGCAGCAGCAGCGAGAAGCTTTCGATAGGCTAGGCGGCGATA
TGGACTATAACCCTGCCTGAATGTTTCGTAACACTTTTCAGTCAGGCTTT
CTATCCATCCTCTACTCTCTGGGCAACAAACCCCTCCAACTCTGGGATAA
GGCATTGTACAACGGCAGCCTCAAGCGTCTAGCCGACGAAGACGTTTCCT
CCGGTGTCCTGGAGCTTGTAGGGGAGAATGTTGCGGATAATTTCATCACC
TGCCCTGCCGACTCCAAGAAACAGCTGGGGATAAAGCTGCCATTTATAGT
GTTAGTCCTCAAGAATCTCCACAAATACTTCACCTTCGAAATCCAAGTCC
TGGACGATAAGGGAGTTAAACGCCGACTGCGTGCCTCCAACTTCCAGTCC
ACCACCCGGGTAAAGCCCCTCATCTGCACAATGCCTCTCCGCCTCGACGA
GGGCTGGAATCACGTCCAGCTCAATCTGCCGGACATTCTGCGCAGGGCCT
ACGGCACCACTTACGTCGAAACCCTCCGAGTGCAGATCCACGCCAACTGT
CGCCTCCGTCGGGTGTTCTTCGCCGAACGTCAATGCGCGGAGGATGAGCT
TCCTCCGGAATTCAGGCTCTTCCAACCCATCAAAAAAGCAACCACTCATT
CTTCCTCCCAGCAGCAGGAGGAAAAGGAGGAGGAACGGCAGCGGCAGCAG
CAGCGAGAAGCTTTCGATAGGCTAGGCGGCGATATGGACTATAACCCTGC
CTGAATGTTTCGTAACACTTTTCAGTCAGGCTTTCTATCCATCCTCTACT
CTCTGGGCAACAAACCCCTCCAACTCTGGGATAAGGCATTGTACAACGGC
AGCCTCAAGCGTCTAGCCGACGAAGACGTTTCCTCCGGTGTCCTGGAGCT
TGTAGGGGAGAATGTTGCGGATAATTTCATCACCTGCCCTGCCGACTCCA
AGAAACAGCTGGGGATAAAGCTGCCATTTATAGTGTTAGTCCTCAAGAAT
CTCCACAAATACTTCACCTTCGAAATCCAAGTCCTGGACGATAAGGGAGT
TAAACGCCGACTGCGTGCCTCCAACTTCCAGTCCACCACCCGGGTAAAGC
CCCTCATCTGCACAATGCCTCTCCGCCTCGACGAGGGCTGGAATCACGTC
CAGCTCAATCTGCCGGACATTCTGCGCAGGGCCTACGGCACCACTTACGT
CGAAACCCTCCGAGTGCAGATCCACGCCAACTGTCGCCTCCGTCGGGTGT
TCTTCGCCGAACGTCAATGCGCGGAGGATGAGCTTCCTCCGGAATTCAGG
CTCTTCCAACCCATCAAAAAAGCAACCACTCATTCTTCCTCCCAGCAGCA
GGAGGAAAAGGAGGAGGAACGGCAGCGGCAGCAGCAGCGAGAAGCTTTCG
ATAGGCTAGGCGGCGATATGGACTATAACCCTGCCTGA back to top
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