jgi.p|Nanoce1779_2|595165, mRNA_6473 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595165
Unique NamemRNA_6473
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length589
Alignment locationscaffold_15:750281..750869 -

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Properties
Property NameValue
TranscriptId595251
TrackFilteredModels2
ProteinId595165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:750281..750869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595165gene_6473Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595165mRNA_6473-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6473CDS_6473Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6473 ID=mRNA_6473|Name=jgi.p|Nanoce1779_2|595165|organism=Nannochloropsis oceanica|type=mRNA|length=589bp
CACCGGAGTGCTCCTTCCATGCCGTGACGGTGCTGGAGTGTGTGGGTGGG
CGGGGAGGACAAGGAGGCAAGAGTAAGCGGGTGTGATTGAGACATTGCGG
TGGATGGCACGTTTGTCTGTGTGTGGAGTATGTGCAATGTGTTGACGGTG
GTGGGGGAGGGGAGGCAAGAAGAAATTAATGCCTCGGCCTCCCGTGTCGT
GTCGCTCTTTTCTCTCCTTCGTGCATGCGTTGCATGCGTTAGCTTCTCTT
CTTTGCCCTTTTGCTGCACATGCAGGAGGTGCACACGGTGTCTTCTTTTC
TTTTGCTCTCTACAGCACATCCCTGTTTCTTCCCCTCCTCCTCCACACCA
CTTTTGCCGACCTCCTCCTCCTCCCTTCTCTCTCCATTACCGTCATTATC
CAATTGCTCGAGGTTGACTACAACCTGGAAAATAATCATGATAGCAACGA
TCAATACGCCCTGATTGAGTTCGAAAGTGGTTTCTCTCGTACAGGGCCTC
TTAATGGCCAGTGGCGAAGGAGGAGGCCTAGTGTATAAGACCTTCACCTT
TTGCTTGCTTTTCCACCCAGATCAGATGAGCCATTTTAC
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protein sequence of jgi.p|Nanoce1779_2|595165

>mRNA_6473-protein ID=mRNA_6473-protein|Name=jgi.p|Nanoce1779_2|595165|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MPRPPVSCRSFLSFVHALHALASLLCPFAAHAGGAHGVFFSFALYSTSLF
LPLLLHTTFADLLLLPSLSITVIIQLLEVDYNLENNHDSNDQYALIEFES
GFSRTGPLNGQWRRRRPSV*
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mRNA from alignment at scaffold_15:750281..750869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6473 ID=mRNA_6473|Name=jgi.p|Nanoce1779_2|595165|organism=Nannochloropsis oceanica|type=mRNA|length=589bp|location=Sequence derived from alignment at scaffold_15:750281..750869- (Nannochloropsis oceanica)
CACCGGAGTGCTCCTTCCATGCCGTGACGGTGCTGGAGTGTGTGGGTGGG
CGGGGAGGACAAGGAGGCAAGAGTAAGCGGGTGTGATTGAGACATTGCGG
TGGATGGCACGTTTGTCTGTGTGTGGAGTATGTGCAATGTGTTGACGGTG
GTGGGGGAGGGGAGGCAAGAAGAAATTAATGCCTCGGCCTCCCGTGTCGT
GTCGCTCTTTTCTCTCCTTCGTGCATGCGTTGCATGCGTTAGCTTCTCTT
CTTTGCCCTTTTGCTGCACATGCAGGAGGTGCACACGGTGTCTTCTTTTC
TTTTGCTCTCTACAGCACATCCCTGTTTCTTCCCCTCCTCCTCCACACCA
CTTTTGCCGACCTCCTCCTCCTCCCTTCTCTCTCCATTACCGTCATTATC
CAATTGCTCGAGGTTGACTACAACCTGGAAAATAATCATGATAGCAACGA
TCAATACGCCCTGATTGAGTTCGAAAGTGGTTTCTCTCGTACAGGGCCTC
TTAATGGCCAGTGGCGAAGGAGGAGGCCTAGTGTATAAGACCTTCACCTT
TTGCTTGCTTTTCCACCCAGATCAGATGAGCCATTTTAC
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Coding sequence (CDS) from alignment at scaffold_15:750281..750869-

>mRNA_6473 ID=mRNA_6473|Name=jgi.p|Nanoce1779_2|595165|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_15:750281..750869- (Nannochloropsis oceanica)
ATGCCTCGGCCTCCCGTGTCGTGTCGCTCTTTTCTCTCCTTCGTGCATGC
GTTGCATGCGTTAGCTTCTCTTCTTTGCCCTTTTGCTGCACATGCAGGAG
GTGCACACGGTGTCTTCTTTTCTTTTGCTCTCTACAGCACATCCCTGTTT
CTTCCCCTCCTCCTCCACACCACTTTTGCCGACCTCCTCCTCCTCCCTTC
TCTCTCCATTACCGTCATTATCCAATTGCTCGAGGTTGACTACAACCTGG
AAAATAATCATGATAGCAACGATCAATACGCCCTGATTGAGTTCGAAAGT
GGTTTCTCTCGTACAGGGCCTCTTAATGGCCAGTGGCGAAGGAGGAGGCC
TAGTGTATAA
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Synonyms
Publications