jgi.p|Nanoce1779_2|595146, mRNA_6468 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595146
Unique Name	mRNA_6468
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2639
Alignment location	scaffold_15:725194..727832 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595232
Track	FilteredModels2
ProteinId	595146

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:725194..727832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595146	gene_6468	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595146	mRNA_6468-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6468	CDS_6468	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:725194..727832+
coding sequence from alignment at scaffold_15:725194..727832+

mRNA sequence

>mRNA_6468 ID=mRNA_6468|Name=jgi.p|Nanoce1779_2|595146|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp
GTCGCTGCTGCTTCTGCATGCGAAGGACGACGTCCTTTCCCTACGATCCA
TCCGCTGACAAACAGCAATCGCAGAGTACAACATCATCCACATTATTTAT
CATAATCTATGCAGCCCTCGACCTCATGAGGTGTGTCTGGGGGACTCATG
CGGCAACAACAGCACCATGGGCCTCCCTCGCTGATTTGCCAAGCCCATAA
TGGACCTTCCTCGTTCATCTACCTACAACCCAACCATACATGCAAACGTC
CCCAGACATGCACCCAATTTAAGAGTGCACCATTACCTCTCAGGTTGTCT
AGGTGCGGTCAACGCTCGCGCGGTGAGAGATGATGGTAGCCAGGCCATTT
CATTTCGTGATGTCCGCCCTCTATCTCGGCTACTTCAGGGCGGCTGCTCC
TGCTGCTTCTGCAAGCGAAGCTTTGAAATTCCCCCACCAACCATCTCCTG
CAGACATCAGGAAATGCACCACGTGGCAAATTGTTCGCCATAGTCTGCAG
CTGTCGACCACATGTGGGGTGTTGGGGGCTTTCATGCGGCGACATCTTTG
CTGATTAGCAAAGCCCATGATGGACATTTCACACCCATCTACCAACAGCC
CACCCAGAAGTACACATCCAGACATGCACACGCACGATTATAAAATGTAC
AACACCCTCTCACGTCCATCGCCCGTTCTAGGTGCTGACAAAGTAAAACT
TATCAGTAGAACTAATTAGGAGAGTGTCTAAAGTGTCTTCTCTTCTTTCT
CAACCTCAAACATAGTATGAAGCCGCTTCATCATCAATGCCTGGTCATTT
TGGGTATTCTTGCATGTCTACTTTTGGGACTTAGTGATGCGGCTGGCCAT
AACACCAGCGCTTGTCTTGCAATGATCATGAAGAACGAGGGGCCAATATT
GCCCCGCCTTTTTGATAGTATTCGCGGCTTTGTATCGGAATATTGTGTCA
TGGATACCGGCTCGACGGACGATACTGTGGATGTATTGAGAGCTATTGAT
ATGCCGGGAAAGATTTTGCACGGACCCTTCATCAACTTTGCCCAGGCACG
CAATGCGATGATCAATCAGTGCCGTGAGGTGATGACCTCGTGTGATTACT
TTGTGCTTCTGGATGCGGACATGGTGCTGCGTGTTGATCCGGCATGGAAT
TGGGATGATCTGGATGGGAAGGATGTGTACAATTTGATTCAGATCTCAAG
TGTGGAGTACGAGAACGTGCGGATCATCCGTCGCACGGCAGACCGAATCA
AGGTAGTGGGCGCAACCCATGAGTACTACGATGTGCCCGATGATTACACG
CGAGGGCTGATCCCTAAAGACTTGGTATATATTGATGACGTGGGCGATGG
AAAAGCCAAAGGAGACAAATCACAACGCGATGAGCGGTTGCTCCGGCAGG
AGCTTGCAGACGACCCAAACAATCCACGAACAATCTTTTACTTGGCAAAT
ACCCTAAGGGATATGGGAAGGTACGCCGACGCCATACCCTATTACGAGCA
GCGCAGTCACATGGACAACGGATGGTGGGTGGAACGGGACTATGCTGTGT
ACATGCTTTCTCGATGCTACCTGGCGCTAGACGACGTCGCCAATGCTAGG
AAGTACGGTGAGCTATCGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTA
CGACTTGATCTACTACCTGCACCACCGCGAACAGTATGCCTTGGCATGGT
ATTACTATACTCTAGCGTCCGGTATCCCTAAACCTCCAGTGGACCAAGCA
TTGTTCATTGTCTTGGACATATATGCTTTCTGGCTTGATTTCGAACAGGC
GACGCTATCGCGGCATATTTATCCTACTCAACCCACACTTGTCCTTGAGG
CAGGGTTATCGTTCTTGAACAATGTGCATGCGCCCCAGTACTTGCGGAAC
TACTTTTACAAGAGAGAATGGGGCTCACATACAGTGCAATATCTCGAGAC
TACCATGTCGTACCACCATTATGATGCGACACACGCCAAGACGTTCTGGC
AGTTCATACTTCACCCAACATCCTCAACAGCAAGTGATAATACCACCGAT
GTGGACAACTCGTGCCCTCTCAGCTTATTGGAAGGACATAGACCCGAGGA
ACTCATGGACGATGAGACTCTTCCAAACCACCTTCCATTATTTGCGACCA
TGCCTGAGGTGGAGGTGTCGTGCATAAACCAGTGGTACCCTATGCAGATA
GGTAAAGTGGTGGAGGGGGTATGTGAGGTGCACACCTCTGTTGCGACTCC
TCGCAGTTTCTCGTTCCTAAGCAAAGGCAGCAACGGTGCTCTATATCAAG
ACGCCACGTGGTTTTTAGCAAAGTCGCATACCGAAGATACGGCATCAGGC
AGAGTGCTTTTCCACTTTGTTGTCATAGATGCTAGTTCTCGCATCAAAAC
TTATACGTTGCCCTTTATGCTGAGGGAGACGCCGTCTGGTACGAATGCCG
AGACGGCTTTGTTCTTGCGAGAGGACGAAATCATCATCGTTTTCATTGAT
GGTGAGGATGCGGGGGACGTGACATCTGTGGTCCATCGCCTCCCGTTGAT
AGCTTTGGGCCCGTTGCTAGTGACAGGACCTAAGCATTAAAAGGGTGCTG
CTCCAGTTATGATAAACGTACTAACCTCTGCCATATATT

protein sequence of jgi.p|Nanoce1779_2|595146

>mRNA_6468-protein ID=mRNA_6468-protein|Name=jgi.p|Nanoce1779_2|595146|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MKPLHHQCLVILGILACLLLGLSDAAGHNTSACLAMIMKNEGPILPRLFD
SIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILHGPFINFAQARNAMIN
QCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGKDVYNLIQISSVEYEN
VRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKDLVYIDDVGDGKAKGD
KSQRDERLLRQELADDPNNPRTIFYLANTLRDMGRYADAIPYYEQRSHMD
NGWWVERDYAVYMLSRCYLALDDVANARKYGELSASISNRAEPLYDLIYY
LHHREQYALAWYYYTLASGIPKPPVDQALFIVLDIYAFWLDFEQATLSRH
IYPTQPTLVLEAGLSFLNNVHAPQYLRNYFYKREWGSHTVQYLETTMSYH
HYDATHAKTFWQFILHPTSSTASDNTTDVDNSCPLSLLEGHRPEELMDDE
TLPNHLPLFATMPEVEVSCINQWYPMQIGKVVEGVCEVHTSVATPRSFSF
LSKGSNGALYQDATWFLAKSHTEDTASGRVLFHFVVIDASSRIKTYTLPF
MLRETPSGTNAETALFLREDEIIIVFIDGEDAGDVTSVVHRLPLIALGPL
LVTGPKH*

mRNA from alignment at scaffold_15:725194..727832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6468 ID=mRNA_6468|Name=jgi.p|Nanoce1779_2|595146|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp|location=Sequence derived from alignment at scaffold_15:725194..727832+ (Nannochloropsis oceanica)
GTCGCTGCTGCTTCTGCATGCGAAGGACGACGTCCTTTCCCTACGATCCA
TCCGCTGACAAACAGCAATCGCAGAGTACAACATCATCCACATTATTTAT
CATAATCTATGCAGCCCTCGACCTCATGAGGTGTGTCTGGGGGACTCATG
CGGCAACAACAGCACCATGGGCCTCCCTCGCTGATTTGCCAAGCCCATAA
TGGACCTTCCTCGTTCATCTACCTACAACCCAACCATACATGCAAACGTC
CCCAGACATGCACCCAATTTAAGAGTGCACCATTACCTCTCAGGTTGTCT
AGGTGCGGTCAACGCTCGCGCGGTGAGAGATGATGGTAGCCAGGCCATTT
CATTTCGTGATGTCCGCCCTCTATCTCGGCTACTTCAGGGCGGCTGCTCC
TGCTGCTTCTGCAAGCGAAGCTTTGAAATTCCCCCACCAACCATCTCCTG
CAGACATCAGGAAATGCACCACGTGGCAAATTGTTCGCCATAGTCTGCAG
CTGTCGACCACATGTGGGGTGTTGGGGGCTTTCATGCGGCGACATCTTTG
CTGATTAGCAAAGCCCATGATGGACATTTCACACCCATCTACCAACAGCC
CACCCAGAAGTACACATCCAGACATGCACACGCACGATTATAAAATGTAC
AACACCCTCTCACGTCCATCGCCCGTTCTAGGTGCTGACAAAGTAAAACT
TATCAGTAGAACTAATTAGGAGAGTGTCTAAAGTGTCTTCTCTTCTTTCT
CAACCTCAAACATAGTATGAAGCCGCTTCATCATCAATGCCTGGTCATTT
TGGGTATTCTTGCATGTCTACTTTTGGGACTTAGTGATGCGGCTGGCCAT
AACACCAGCGCTTGTCTTGCAATGATCATGAAGAACGAGGGGCCAATATT
GCCCCGCCTTTTTGATAGTATTCGCGGCTTTGTATCGGAATATTGTGTCA
TGGATACCGGCTCGACGGACGATACTGTGGATGTATTGAGAGCTATTGAT
ATGCCGGGAAAGATTTTGCACGGACCCTTCATCAACTTTGCCCAGGCACG
CAATGCGATGATCAATCAGTGCCGTGAGGTGATGACCTCGTGTGATTACT
TTGTGCTTCTGGATGCGGACATGGTGCTGCGTGTTGATCCGGCATGGAAT
TGGGATGATCTGGATGGGAAGGATGTGTACAATTTGATTCAGATCTCAAG
TGTGGAGTACGAGAACGTGCGGATCATCCGTCGCACGGCAGACCGAATCA
AGGTAGTGGGCGCAACCCATGAGTACTACGATGTGCCCGATGATTACACG
CGAGGGCTGATCCCTAAAGACTTGGTATATATTGATGACGTGGGCGATGG
AAAAGCCAAAGGAGACAAATCACAACGCGATGAGCGGTTGCTCCGGCAGG
AGCTTGCAGACGACCCAAACAATCCACGAACAATCTTTTACTTGGCAAAT
ACCCTAAGGGATATGGGAAGGTACGCCGACGCCATACCCTATTACGAGCA
GCGCAGTCACATGGACAACGGATGGTGGGTGGAACGGGACTATGCTGTGT
ACATGCTTTCTCGATGCTACCTGGCGCTAGACGACGTCGCCAATGCTAGG
AAGTACGGTGAGCTATCGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTA
CGACTTGATCTACTACCTGCACCACCGCGAACAGTATGCCTTGGCATGGT
ATTACTATACTCTAGCGTCCGGTATCCCTAAACCTCCAGTGGACCAAGCA
TTGTTCATTGTCTTGGACATATATGCTTTCTGGCTTGATTTCGAACAGGC
GACGCTATCGCGGCATATTTATCCTACTCAACCCACACTTGTCCTTGAGG
CAGGGTTATCGTTCTTGAACAATGTGCATGCGCCCCAGTACTTGCGGAAC
TACTTTTACAAGAGAGAATGGGGCTCACATACAGTGCAATATCTCGAGAC
TACCATGTCGTACCACCATTATGATGCGACACACGCCAAGACGTTCTGGC
AGTTCATACTTCACCCAACATCCTCAACAGCAAGTGATAATACCACCGAT
GTGGACAACTCGTGCCCTCTCAGCTTATTGGAAGGACATAGACCCGAGGA
ACTCATGGACGATGAGACTCTTCCAAACCACCTTCCATTATTTGCGACCA
TGCCTGAGGTGGAGGTGTCGTGCATAAACCAGTGGTACCCTATGCAGATA
GGTAAAGTGGTGGAGGGGGTATGTGAGGTGCACACCTCTGTTGCGACTCC
TCGCAGTTTCTCGTTCCTAAGCAAAGGCAGCAACGGTGCTCTATATCAAG
ACGCCACGTGGTTTTTAGCAAAGTCGCATACCGAAGATACGGCATCAGGC
AGAGTGCTTTTCCACTTTGTTGTCATAGATGCTAGTTCTCGCATCAAAAC
TTATACGTTGCCCTTTATGCTGAGGGAGACGCCGTCTGGTACGAATGCCG
AGACGGCTTTGTTCTTGCGAGAGGACGAAATCATCATCGTTTTCATTGAT
GGTGAGGATGCGGGGGACGTGACATCTGTGGTCCATCGCCTCCCGTTGAT
AGCTTTGGGCCCGTTGCTAGTGACAGGACCTAAGCATTAAAAGGGTGCTG
CTCCAGTTATGATAAACGTACTAACCTCTGCCATATATT

Coding sequence (CDS) from alignment at scaffold_15:725194..727832+

>mRNA_6468 ID=mRNA_6468|Name=jgi.p|Nanoce1779_2|595146|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_15:725194..727832+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCATCATCAATGCCTGGTCATTTTGGGTATTCTTGCATG
TCTACTTTTGGGACTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTC
TTGCAATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGAT
AGTATTCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGAC
GGACGATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTT
TGCACGGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAAT
CAGTGCCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGC
GGACATGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATG
GGAAGGATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAAC
GTGCGGATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAAC
CCATGAGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTA
AAGACTTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGAC
AAATCACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCC
AAACAATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGG
GAAGGTACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGAC
AACGGATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATG
CTACCTGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTAT
CGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTAC
CTGCACCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGC
GTCCGGTATCCCTAAACCTCCAGTGGACCAAGCATTGTTCATTGTCTTGG
ACATATATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCAT
ATTTATCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTT
GAACAATGTGCATGCGCCCCAGTACTTGCGGAACTACTTTTACAAGAGAG
AATGGGGCTCACATACAGTGCAATATCTCGAGACTACCATGTCGTACCAC
CATTATGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCC
AACATCCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCC
CTCTCAGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAG
ACTCTTCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGT
GTCGTGCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGG
GGGTATGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTC
CTAAGCAAAGGCAGCAACGGTGCTCTATATCAAGACGCCACGTGGTTTTT
AGCAAAGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACT
TTGTTGTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTT
ATGCTGAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTT
GCGAGAGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGG
ACGTGACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTG
CTAGTGACAGGACCTAAGCATTAA

Synonyms

Publications