jgi.p|Nanoce1779_2|595138, mRNA_6466 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595138
Unique NamemRNA_6466
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length602
Alignment locationscaffold_15:718695..719972 -

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Properties
Property NameValue
TranscriptId595224
TrackFilteredModels2
ProteinId595138
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:718695..719972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595138gene_6466Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595138mRNA_6466-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6466CDS_6466Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6466 ID=mRNA_6466|Name=jgi.p|Nanoce1779_2|595138|organism=Nannochloropsis oceanica|type=mRNA|length=602bp
AACTACAGCAACGACCGACGAGGACACTGGAAGCCAGAGCGATACAGCCA
GGTTCATGTCGCTTTCTGCAGACGAAATCGTCGACATTGTCGATGAGAAC
AACCAGGTCTTGCGGCAAGAACGGCGGGCGGTGATGCGGAAAGAGCGTCT
CCTTCACCGGTCCACCTACATCTTCGCCAGGAACAGCCAAGGGCAGTTCT
ACGTGCAGAAGCGTACAATGATCAAGGATTATTGCCCGGGTTACTACGAA
GCAGGCGAAACATACGCGGAGAATGCAGGCCGCGAGGTGGAGGAAGAGCT
GGGGATACCACCCACGGCGCCCAAGGCACATTTGTTCACTTTCCTGTACG
AAGACGAGAGGTTGAGGGTCTTTGGCGATGCCTGGGAGGTGGTTTGGGAC
GGGGAGTTGAAGCTACAGCCGGAAGAAGTGGAGAGCGTCCATCCTATGAC
TTTGGACGAGGTCTTCGCCCGCGTCGAGGCTGGCGACCAGTTCACGCCCG
ACTCTCTTTATGCGACACGGAAATATCTGGAGTACATGAAGGAGAAGAGT
GTAGGTGGGGACGAGGGAGGGAAGGAGTGAAGGAACGAGGGAGGGAACGA
GG
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protein sequence of jgi.p|Nanoce1779_2|595138

>mRNA_6466-protein ID=mRNA_6466-protein|Name=jgi.p|Nanoce1779_2|595138|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MSLSADEIVDIVDENNQVLRQERRAVMRKERLLHRSTYIFARNSQGQFYV
QKRTMIKDYCPGYYEAGETYAENAGREVEEELGIPPTAPKAHLFTFLYED
ERLRVFGDAWEVVWDGELKLQPEEVESVHPMTLDEVFARVEAGDQFTPDS
LYATRKYLEYMKEKSVGGDEGGKE*
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mRNA from alignment at scaffold_15:718695..719972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6466 ID=mRNA_6466|Name=jgi.p|Nanoce1779_2|595138|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_15:718695..719972- (Nannochloropsis oceanica)
AACTACAGCAACGACCGACGAGGACACTGGAAGCCAGAGCGATACAGCCA
GGTTCATGTCGCTTTCTGCAGACGAAATCGTAAGTCTTGGCGTTTTGCGT
GTGGTTCTTGCTCTCCCTCCCTCTCCCCTTTCTCACACTCCATCCCTCAC
TACAGGTCGACATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGG
CGGGCGGTGATGGTACGTGTTTGGCGTAAGCTTCTTTTTCGCTCCCTACC
TCCCCCTCACCACACCTTCCTTCTTTCCTCCTGTCCTCCCCATCTTCCCA
CACAGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAGTAGTGGCGGGGGGGGGTGGTGGGCGTGAGT
GAAGGAGGGAGGGAGGAAGGAAAGGAAGTGAAGGAGGGGTGGGGGGAGGG
GCAGATGCCTTCAATCGGTGGCAGAGTTGTGTATGTCTAGTGCTTTAGAT
GTGTCTGTGCGCATTAGACGATAACAACCTCCCTTTCCTCTCACACTTTT
CATATCCTCTCTGTCTCCCTCTTCCCAGGCAGGCGAAACATACGCGGAGA
ATGCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACGGCGCCC
AAGGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAGGGTCTT
TGGCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTACAGCCGG
TGAGAGAGGGAGGGAGGGAGGAAGGGAGGAGGGAGGGAGGGAGGAAAGGA
GGAGGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAGTATGCTTCTTGTACTGTGTGTGCATCTTTCCCTCTATTTCATCCT
CATCCCTCCCTCCCTCCATATTTCATTACTCCTTCTTTAAGGAAGAAGTG
GAGAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGT
ATGTTTCCATCCTACAACCCCTTCCTCCGTCCCTTCCTCCCTCCCTCCAT
CCCCTCCTTTACGATCTTGTCTCCCTCCCTTCCTTCCTCCCATCCTCCCG
TTAGGCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAAT
ATCTGGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAG
GAGTGAAGGAACGAGGGAGGGAACGAGG
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Coding sequence (CDS) from alignment at scaffold_15:718695..719972-

>mRNA_6466 ID=mRNA_6466|Name=jgi.p|Nanoce1779_2|595138|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_15:718695..719972- (Nannochloropsis oceanica)
GCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATATCT
GGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGAGT
GAGAAGAAGTGGAGAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCC
CGCGTCGAGGCAGGCGAAACATACGCGGAGAATGCAGGCCGCGAGGTGGA
GGAAGAGCTGGGGATACCACCCACGGCGCCCAAGGCACATTTGTTCACTT
TCCTGTACGAAGACGAGAGGTTGAGGGTCTTTGGCGATGCCTGGGAGGTG
GTTTGGGACGGGGAGTTGAAGCTACAGCCGCGGAAAGAGCGTCTCCTTCA
CCGGTCCACCTACATCTTCGCCAGGAACAGCCAAGGGCAGTTCTACGTGC
AGAAGCGTACAATGATCAAGGATTATTGCCCGGGTTACTACGAAGTCGAC
ATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGGCGGGCGGTGAT
GATGTCGCTTTCTGCAGACGAAATCGCTGGCGACCAGTTCACGCCCGACT
CTCTTTATGCGACACGGAAATATCTGGAGTACATGAAGGAGAAGAGTGTA
GGTGGGGACGAGGGAGGGAAGGAGTGAGAAGAAGTGGAGAGCGTCCATCC
TATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGCAGGCGAAACATACG
CGGAGAATGCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACG
GCGCCCAAGGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAG
GGTCTTTGGCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTAC
AGCCGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAGTCGACATTGTCGATGAGAACAACCAGGTCT
TGCGGCAAGAACGGCGGGCGGTGATGATGTCGCTTTCTGCAGACGAAATC
GCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATATCT
GGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGAGT
GAGAAGAAGTGGAGAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCC
CGCGTCGAGGCAGGCGAAACATACGCGGAGAATGCAGGCCGCGAGGTGGA
GGAAGAGCTGGGGATACCACCCACGGCGCCCAAGGCACATTTGTTCACTT
TCCTGTACGAAGACGAGAGGTTGAGGGTCTTTGGCGATGCCTGGGAGGTG
GTTTGGGACGGGGAGTTGAAGCTACAGCCGCGGAAAGAGCGTCTCCTTCA
CCGGTCCACCTACATCTTCGCCAGGAACAGCCAAGGGCAGTTCTACGTGC
AGAAGCGTACAATGATCAAGGATTATTGCCCGGGTTACTACGAAGTCGAC
ATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGGCGGGCGGTGAT
GATGTCGCTTTCTGCAGACGAAATCGCTGGCGACCAGTTCACGCCCGACT
CTCTTTATGCGACACGGAAATATCTGGAGTACATGAAGGAGAAGAGTGTA
GGTGGGGACGAGGGAGGGAAGGAGTGAGAAGAAGTGGAGAGCGTCCATCC
TATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGCAGGCGAAACATACG
CGGAGAATGCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACG
GCGCCCAAGGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAG
GGTCTTTGGCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTAC
AGCCGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAGTCGACATTGTCGATGAGAACAACCAGGTCT
TGCGGCAAGAACGGCGGGCGGTGATGATGTCGCTTTCTGCAGACGAAATC
GCTGGCGACCAGTTCACGCCCGACTCTCTTTATGCGACACGGAAATATCT
GGAGTACATGAAGGAGAAGAGTGTAGGTGGGGACGAGGGAGGGAAGGAGT
GAGAAGAAGTGGAGAGCGTCCATCCTATGACTTTGGACGAGGTCTTCGCC
CGCGTCGAGGCAGGCGAAACATACGCGGAGAATGCAGGCCGCGAGGTGGA
GGAAGAGCTGGGGATACCACCCACGGCGCCCAAGGCACATTTGTTCACTT
TCCTGTACGAAGACGAGAGGTTGAGGGTCTTTGGCGATGCCTGGGAGGTG
GTTTGGGACGGGGAGTTGAAGCTACAGCCGCGGAAAGAGCGTCTCCTTCA
CCGGTCCACCTACATCTTCGCCAGGAACAGCCAAGGGCAGTTCTACGTGC
AGAAGCGTACAATGATCAAGGATTATTGCCCGGGTTACTACGAAGTCGAC
ATTGTCGATGAGAACAACCAGGTCTTGCGGCAAGAACGGCGGGCGGTGAT
GATGTCGCTTTCTGCAGACGAAATCGCTGGCGACCAGTTCACGCCCGACT
CTCTTTATGCGACACGGAAATATCTGGAGTACATGAAGGAGAAGAGTGTA
GGTGGGGACGAGGGAGGGAAGGAGTGAGAAGAAGTGGAGAGCGTCCATCC
TATGACTTTGGACGAGGTCTTCGCCCGCGTCGAGGCAGGCGAAACATACG
CGGAGAATGCAGGCCGCGAGGTGGAGGAAGAGCTGGGGATACCACCCACG
GCGCCCAAGGCACATTTGTTCACTTTCCTGTACGAAGACGAGAGGTTGAG
GGTCTTTGGCGATGCCTGGGAGGTGGTTTGGGACGGGGAGTTGAAGCTAC
AGCCGCGGAAAGAGCGTCTCCTTCACCGGTCCACCTACATCTTCGCCAGG
AACAGCCAAGGGCAGTTCTACGTGCAGAAGCGTACAATGATCAAGGATTA
TTGCCCGGGTTACTACGAAGTCGACATTGTCGATGAGAACAACCAGGTCT
TGCGGCAAGAACGGCGGGCGGTGATGATGTCGCTTTCTGCAGACGAAATC
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Synonyms
Publications