jgi.p|Nanoce1779_2|595123, mRNA_6463 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595123
Unique Name	mRNA_6463
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2148
Alignment location	scaffold_15:710093..712550 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595209
Track	FilteredModels2
ProteinId	595123

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:710093..712550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595123	gene_6463	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595123	mRNA_6463-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6463	CDS_6463	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:710093..712550+
coding sequence from alignment at scaffold_15:710093..712550+

mRNA sequence

>mRNA_6463 ID=mRNA_6463|Name=jgi.p|Nanoce1779_2|595123|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
TCCAGGGCGGCTGCTCCTGCTGTTTCTGCAGGGGTGTTGGGGGCATTTAT
GCGGCGACCACACGCACGTGCCTTCTCCTCTTTCTCAACCCCCGACATAG
TATGAAGCCGCTTCATCATCAATGCCTGGCCATTTTGGGTATTCTTGCAT
GTCTACTTTTGGGATTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGT
CTTGCAATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGA
TAGTATTCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGA
CGGACGATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATT
TTGCACGGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAA
TCAGTGCCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATG
CGGACATGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGAT
GGGAAGGATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAA
CGTGCGGATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAA
CCCATGAGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCT
AAAGACTTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGA
CAAATCACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACC
CAAACAATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATG
GGAAGGTACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGA
CAACGGATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGAT
GCTACCTGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTA
TCGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTA
CCTGCACCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAG
CGTCCGGTATCCCTAAACCTCCAGTGGACCAAGCACTGTTCATTGTCTTG
GACATATATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCA
TATTTATCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCT
TGAACAATGTGCATGCGCCCCAGCACTTGCGGAACTACTTTTACAAGAGA
GAATGGGGCTCACATACAGTGCAATATCTCGAGACTAACATGTCGTACCA
CCATTATGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACC
CAACATCCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGC
CATCTCAGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGA
GACTCTTCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGG
TGTCGTGCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAG
GGGGTATGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTT
CCTAAGCAAAGGCAGCAACGGTGCTCTGTATCAAGACGCCACGTGGTTTT
TAGCAAAGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCAC
TTTGTTGTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTT
TATGCTGAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCT
TGCGAGAGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGG
GACGTGACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTT
GCTAGTGACAGGACCTAAGCATTAAAAGGGTGCTGCTCCAGTTATGATAA
ACGTACTAACCTCTGCAATATATTGCCCCCTCCAAAGACTCTGTACTTTC
CCTGTGTACTTTCAAAACCTTGCATCCCGACGCGCTGCTCTCACTCTTAC
AGTACATGTACGATGGGAGTGGCCTGTACCTAATTCCTCGTGTCAGTCTA
TTGAGAAAAAGTCAACCAATGCCAACCAAAGAACCAATCACGAAGGCA

protein sequence of jgi.p|Nanoce1779_2|595123

>mRNA_6463-protein ID=mRNA_6463-protein|Name=jgi.p|Nanoce1779_2|595123|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MKPLHHQCLAILGILACLLLGFSDAAGHNTSACLAMIMKNEGPILPRLFD
SIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILHGPFINFAQARNAMIN
QCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGKDVYNLIQISSVEYEN
VRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKDLVYIDDVGDGKAKGD
KSQRDERLLRQELADDPNNPRTIFYLANTLRDMGRYADAIPYYEQRSHMD
NGWWVERDYAVYMLSRCYLALDDVANARKYGELSASISNRAEPLYDLIYY
LHHREQYALAWYYYTLASGIPKPPVDQALFIVLDIYAFWLDFEQATLSRH
IYPTQPTLVLEAGLSFLNNVHAPQHLRNYFYKREWGSHTVQYLETNMSYH
HYDATHAKTFWQFILHPTSSTASDNTTDVDNSCHLSLLEGHRPEELMDDE
TLPNHLPLFATMPEVEVSCINQWYPMQIGKVVEGVCEVHTSVATPRSFSF
LSKGSNGALYQDATWFLAKSHTEDTASGRVLFHFVVIDASSRIKTYTLPF
MLRETPSGTNAETALFLREDEIIIVFIDGEDAGDVTSVVHRLPLIALGPL
LVTGPKH*

mRNA from alignment at scaffold_15:710093..712550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6463 ID=mRNA_6463|Name=jgi.p|Nanoce1779_2|595123|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp|location=Sequence derived from alignment at scaffold_15:710093..712550+ (Nannochloropsis oceanica)
TCCAGGGCGGCTGCTCCTGCTGTTTCTGCATGCTCCGTCATCCCTTCCCC
ATCATCCATCCCCTGCAAAACAGTAGGTATAAAGTAGCACACCTTGGAGC
ACATCGTGCAGCTCTCGATCTCATGTGGGGGTGTTGGGGGCATTTATGCG
GCGACGGCAATTCCATGGGCCTCCCTCATCGATTCGCCAAGCCCGTGATG
GACCTTCTATCTACAACCCACTCGGCTACACACCCAAAAACACACGCACG
CACACAATTGAAGAGTTTATCATGCCTTTCACGCATCGCCCGCTCTGGGT
GCGAACTTTACTCGCCGATGGGGTGCATAGTAGGTCTCCCATGCTATTAT
GAGACCAAATTAACTGATGGGTCTGACATGCCTTCTCCTCTTTCTCAACC
CCCGACATAGTATGAAGCCGCTTCATCATCAATGCCTGGCCATTTTGGGT
ATTCTTGCATGTCTACTTTTGGGATTTAGTGATGCGGCTGGCCATAACAC
CAGCGCTTGTCTTGCAATGATCATGAAGAACGAGGGGCCAATATTGCCCC
GCCTTTTTGATAGTATTCGCGGCTTTGTATCGGAATATTGTGTCATGGAT
ACCGGCTCGACGGACGATACTGTGGATGTATTGAGAGCTATTGATATGCC
GGGAAAGATTTTGCACGGACCCTTCATCAACTTTGCCCAGGCACGCAATG
CGATGATCAATCAGTGCCGTGAGGTGATGACCTCGTGTGATTACTTTGTG
CTTCTGGATGCGGACATGGTGCTGCGTGTTGATCCGGCATGGAATTGGGA
TGATCTGGATGGGAAGGATGTGTACAATTTGATTCAGATCTCAAGTGTGG
AGTACGAGAACGTGCGGATCATCCGTCGCACGGCAGACCGAATCAAGGTA
GTGGGCGCAACCCATGAGTACTACGATGTGCCCGATGATTACACGCGAGG
GCTGATCCCTAAAGACTTGGTATATATTGATGACGTGGGCGATGGAAAAG
CCAAAGGAGACAAATCACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTT
GCAGACGACCCAAACAATCCACGAACAATCTTTTACTTGGCAAATACCCT
AAGGGATATGGGAAGGTACGCCGACGCCATACCCTATTACGAGCAGCGCA
GTCACATGGACAACGGATGGTGGGTGGAACGGGACTATGCTGTGTACATG
CTTTCTCGATGCTACCTGGCGCTAGACGACGTCGCCAATGCTAGGAAGTA
CGGTGAGCTATCGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTACGACT
TGATCTACTACCTGCACCACCGCGAACAGTATGCCTTGGCATGGTATTAC
TATACTCTAGCGTCCGGTATCCCTAAACCTCCAGTGGACCAAGCACTGTT
CATTGTCTTGGACATATATGCTTTCTGGCTTGATTTCGAACAGGCGACGC
TATCGCGGCATATTTATCCTACTCAACCCACACTTGTCCTTGAGGCAGGG
TTATCGTTCTTGAACAATGTGCATGCGCCCCAGCACTTGCGGAACTACTT
TTACAAGAGAGAATGGGGCTCACATACAGTGCAATATCTCGAGACTAACA
TGTCGTACCACCATTATGATGCGACACACGCCAAGACGTTCTGGCAGTTC
ATACTTCACCCAACATCCTCAACAGCAAGTGATAATACCACCGATGTGGA
CAACTCGTGCCATCTCAGCTTATTGGAAGGACATAGACCCGAGGAACTCA
TGGACGATGAGACTCTTCCAAACCACCTTCCATTATTTGCGACCATGCCT
GAGGTGGAGGTGTCGTGCATAAACCAGTGGTACCCTATGCAGATAGGTAA
AGTGGTGGAGGGGGTATGTGAGGTGCACACCTCTGTTGCGACTCCTCGCA
GTTTCTCGTTCCTAAGCAAAGGCAGCAACGGTGCTCTGTATCAAGACGCC
ACGTGGTTTTTAGCAAAGTCGCATACCGAAGATACGGCATCAGGCAGAGT
GCTTTTCCACTTTGTTGTCATAGATGCTAGTTCTCGCATCAAAACTTATA
CGTTGCCCTTTATGCTGAGGGAGACGCCGTCTGGTACGAATGCCGAGACG
GCTTTGTTCTTGCGAGAGGACGAAATCATCATCGTTTTCATTGATGGTGA
GGATGCGGGGGACGTGACATCTGTGGTCCATCGCCTCCCGTTGATAGCTT
TGGGCCCGTTGCTAGTGACAGGACCTAAGCATTAAAAGGGTGCTGCTCCA
GTTATGATAAACGTACTAACCTCTGCAATATATTGCCCCCTCCAAAGACT
CTGTACTTTCCCTGTGTACTTTCAAAACCTTGCATCCCGACGCGCTGCTC
TCACTCTTACAGTACATGTACGATGGGAGTGGCCTGTACCTAATTCCTCG
TGTCAGTCTATTGAGAAAAAGTCAACCAATGCCAACCAAAGAACCAATCA
CGAAGGCA

Coding sequence (CDS) from alignment at scaffold_15:710093..712550+

>mRNA_6463 ID=mRNA_6463|Name=jgi.p|Nanoce1779_2|595123|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_15:710093..712550+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCATCATCAATGCCTGGCCATTTTGGGTATTCTTGCATG
TCTACTTTTGGGATTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTC
TTGCAATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGAT
AGTATTCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGAC
GGACGATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTT
TGCACGGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAAT
CAGTGCCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGC
GGACATGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATG
GGAAGGATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAAC
GTGCGGATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAAC
CCATGAGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTA
AAGACTTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGAC
AAATCACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCC
AAACAATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGG
GAAGGTACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGAC
AACGGATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATG
CTACCTGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTAT
CGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTAC
CTGCACCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGC
GTCCGGTATCCCTAAACCTCCAGTGGACCAAGCACTGTTCATTGTCTTGG
ACATATATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCAT
ATTTATCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTT
GAACAATGTGCATGCGCCCCAGCACTTGCGGAACTACTTTTACAAGAGAG
AATGGGGCTCACATACAGTGCAATATCTCGAGACTAACATGTCGTACCAC
CATTATGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCC
AACATCCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCC
ATCTCAGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAG
ACTCTTCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGT
GTCGTGCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGG
GGGTATGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTC
CTAAGCAAAGGCAGCAACGGTGCTCTGTATCAAGACGCCACGTGGTTTTT
AGCAAAGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACT
TTGTTGTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTT
ATGCTGAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTT
GCGAGAGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGG
ACGTGACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTG
CTAGTGACAGGACCTAAGCATTAA

Synonyms

Publications