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Properties
| Property Name | Value |
|---|
| TranscriptId | 595207 |
| Track | FilteredModels2 |
| ProteinId | 595121 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:707121..709583 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6462 ID=mRNA_6462|Name=jgi.p|Nanoce1779_2|595121|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
GGATGGCATTGGTGGATTTCCGGTAAGGAGGGGAGGAAGGGAGGGAGGGA
GGGAGGGAGGGTCTTTTTTCAATTCCGACGTAAGTCATGTGGCACATGTA
ATCATTTTTCCTCCCTCCTCTTCCTTCCTTTCCTTTTCTTTCCTTCCTCC
CTTCTCTTTTTCTTCCTCTTTCCTTCAACCTCACGTGAACGCACGCACGC
ATGTATCTCACACCCACCCCCACGCCCACAGGGGGATGCATGAATTGACT
TGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTGTCAGATGCGGTGCGG
CGACATGTACAAGATGGACGTCCTTCAAAACTTCCACACGTGTGCCATCA
GCCAGCACCAATGCGTGCCGCAACGAGTGGAAGAAGAAAATAAGCTCCCC
GACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAACGGCGA
GTGGTTCATCACCCACGGCATTAACCCCATCATGGACTGTTTTCCCTGTC
AGCACCATCAGGCGCTGAAGGAGGCAAAGGGGTTCCAGGCAGTGTCTCTT
CCCCCCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCCTATCA
GGTGTCTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTTCACAC
GGAATCTCCAGCAGCATTTCACGCAGGATTCTCTTTACCCCGGCCTCCTC
CACGCTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATTGGTACATTCT
GGCTGCTGATCCCGAACGCTACATGTTTGTCTGGCCTGGTGTGGTTTTAC
CGGTGGCGTCGTTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCCTCTAC
CCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGGATCGA
GGGCATGTGCAAAGTGGACAACACTCAGTGTAATTTGAAGTAAAGGGTGC
AAACTCTCCCTCTCTCCCTTCCTCCCTCCTCTTCTTCCTTGCGTGAGCGG
GGAGGAGGATGGAGAAGAGGGCGAGGAGAAGTAGGAGAAGGAGGAGAGGA
ACGAGGAATAGGAAGACGGTGACGACGTTGATGGTGGTCCTTCTGTGAAG
AGGATTAATAGAAAAGTAGATGAAAGAAGTGGAGAAAAGTGATTTGGCGG
GGAGAAGAGAATGAGGAGGGGGGGGGTAAAGGGTGTACAAGGAAAAGAAA
GGAAGCAAGACATTGCCAGTAGCATAGAAGCATGCAAATATAGGTTAGAA
AAATGAATCAACGACCCCT back to topprotein sequence of jgi.p|Nanoce1779_2|595121 >mRNA_6462-protein ID=mRNA_6462-protein|Name=jgi.p|Nanoce1779_2|595121|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MHELTCLVTCGPSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVEE
ENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALKEAKGF
QAVSLPPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSL
YPGLLHARAQGYLQQEDDWYILAADPERYMFVWPGVVLPVASFFSRTPSL
PPSLYPSLEETARKVGVKGGIEGMCKVDNTQCNLK* back to topmRNA from alignment at scaffold_15:707121..709583+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6462 ID=mRNA_6462|Name=jgi.p|Nanoce1779_2|595121|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at scaffold_15:707121..709583+ (Nannochloropsis oceanica)
GGATGGCATTGGTGGATTTCCGGTAAGGAGGGGAGGAAGGGAGGGAGGGA
GGGAGGGAGGGTCTTTTTTCAATTCCGACGTAAGTCATGTGGCACATGTA
ATCATTTTTCCTCCCTCCTCTTCCTTCCTTTCCTTTTCTTTCCTTCCTCC
CTTCTCTTTTTCTTCCTCTTTCCTTCAACCTCACGTGAACGCACGCACGC
ATGTATCTCACACCCACCCCCACGCCCACAGGGGGATGCATGAATTGACT
TGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTGTCAGGTACATAGGCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTATCAATCT
TGCCGCTTTCCCTCTTTGTCTCCCTCCCTCTCAAATCTCCCTCCGTATGT
CCTCAGTCTCCGTCCGGACCTTCCCCCCATTCCTCCTTCCACATCACCCA
ACCCTCCCTCCTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCCCCC
TCGCTAGATGCGGTGCGGCGACATGTACAAGATGGACGTCCTTCAAAACT
TCCACACGTGTGCCATCAGCCAGCACCAATGCGTGCCGCAACGAGTGGAA
GAAGAAAATAAGGCAAGCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTC
CCTTCCTCCCTCCCTCCCCTTCTTCCGCCGTGTTAGATCACCTGCTTTCC
TGCTTGTATTCTAAAGAACATTCAGATTTTGAATACCATCTCACATCCCT
CCCTCCCTCCCTCTCGCCCGCCCGCCCTCTATGGCAGCTCCCCGACCCCT
CCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAACGGCGAGTGGTTC
ATCACCCACGGCATTAACCCCATCATGGACTGTTTTCCCTGTCAGCACCA
TCAGGTGGGTGGGTAGGTCGGGAGGTAGGGAGGTAGGAAGGTATAGAGAG
ACTGAGAGGCGCACGCCCTGCCTGCATTCTTTTCCCTCCTTTCTTCCCTC
CGTCACTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCTCTCCATTTGCCAT
GACGAGGGTACTTTTCGCAAAAGCTGATCTTCTAAGCCTTGCCTCCCTCC
CTCCCTCCCTCCCTCCCGCCCGCCCGCCCGCCCGCCCGCCCTCCCACCTT
CCTCCCCTCCTTCAGGCGCTGGTCGAGCTCCCTCCCTCTTCTCCTATCCT
CCTCCACTCCTCCAGCACCACCAAGCAGCAGCAATCACATCAACCTCTAT
CATCACAACAAGAAGGAGGCAAAGGGGTTCCAGGCAGTGTCTCTTCCCCC
CCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCCTATCAGGTGT
CTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTTCACACGGAAT
CTCCAGCAGCATTTCACGCAGGTACGCCCTCCCTCCCTCCTTCCTTCCCT
TCCTTCCATCTCTTCCTTCCGTCCTCCTCACCCCTCTATCCCCCTCCTCT
TTCCTCCTTCCTTCCCTCCCTCCCTTTCCTCTTCCCCCCCCCCTTGCTCA
CCCCCCTCCTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCTTCTTT
TCTATTCCTCCCACCCCCTTCCTCTTTCTTCCTTTCCTCCCTCTCTTCTT
CCCTCCTCTCCATCCCTCTCACTCCCCTCCTCTTTCTTCCCTCCCCTCCT
CCCTCCCTTCCTCCCTCCCCCAGGATTCTCTTTACCCCGGCCTCCTCCAC
GCTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATTGGTACATTCTGGC
TGCTGATCCCGAACGGTAAGTCTCCCTCCCTTCCTCCCTCCCTCCTTCCC
TCTATGCCTGCCTGCCTGTCGTGCATTGATTCTTTCCAAATTCTCACGTT
CCTCCCTCTCTCCTTCCCCCCCTTCCCTCCCTCCCTCTCTCAGCTACATG
TTTGTCTGGTATGAGGGTTGCAACAAGGCCTGGTGTGGTTTTACCGGTGG
CGTCGTTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCCTCTACCCTTCC
CTCGAGGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGGATCGAGGGCAT
GTGCAAAGTGGACAACACTCAGTGTAATTTGAAGTAAAGGGTGCAAACTC
TCCCTCTCTCCCTTCCTCCCTCCTCTTCTTCCTTGCGTGAGCGGGGAGGA
GGATGGAGAAGAGGGCGAGGAGAAGTAGGAGAAGGAGGAGAGGAACGAGG
AATAGGAAGACGGTGACGACGTTGATGGTGGTCCTTCTGTGAAGAGGATT
AATAGAAAAGTAGATGAAAGAAGTGGAGAAAAGTGATTTGGCGGGGAGAA
GAGAATGAGGAGGGGGGGGGTAAAGGGTGTACAAGGAAAAGAAAGGAAGC
AAGACATTGCCAGTAGCATAGAAGCATGCAAATATAGGTTAGAAAAATGA
ATCAACGACCCCT back to topCoding sequence (CDS) from alignment at scaffold_15:707121..709583+ >mRNA_6462 ID=mRNA_6462|Name=jgi.p|Nanoce1779_2|595121|organism=Nannochloropsis oceanica|type=CDS|length=5664bp|location=Sequence derived from alignment at scaffold_15:707121..709583+ (Nannochloropsis oceanica)
ATGCATGAATTGACTTGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTG
TCAGATGCGGTGCGGCGACATGTACAAGATGGACGTCCTTCAAAACTTCC
ACACGTGTGCCATCAGCCAGCACCAATGCGTGCCGCAACGAGTGGAAGAA
GAAAATAAGCTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCC
CTCCCTCAACGGCGAGTGGTTCATCACCCACGGCATTAACCCCATCATGG
ACTGTTTTCCCTGTCAGCACCATCAGGCGCTGAAGGAGGCAAAGGGGTTC
CAGGCAGTGTCTCTTCCCCCCCCTCCCTCCCTCCGTCCCTCCATCGTTTT
TGACGTTTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGGTCCTTTTC
TTCAAACGTTCACACGGAATCTCCAGCAGCATTTCACGCAGGATTCTCTT
TACCCCGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAACAAGAAGA
CGATTGGTACATTCTGGCTGCTGATCCCGAACGCTACATGTTTGTCTGGC
CTGGTGTGGTTTTACCGGTGGCGTCGTTTTTTTCCCGCACCCCCTCCCTT
CCTCCTTCCCTCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGT
GAAGGGAGGGATCGAGGGCATGTGCAAAGTGGACAACACTCAGTGTAATT
TGAAGTAAATGCATGAATTGACTTGCCTCGTAACATGCGGTCCTTCCGAC
TTGGCCTGTCAGATGCGGTGCGGCGACATGTACAAGATGGACGTCCTTCA
AAACTTCCACACGTGTGCCATCAGCCAGCACCAATGCGTGCCGCAACGAG
TGGAAGAAGAAAATAAGCTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTC
TCCCTCCCCTCCCTCAACGGCGAGTGGTTCATCACCCACGGCATTAACCC
CATCATGGACTGTTTTCCCTGTCAGCACCATCAGGCGCTGAAGGAGGCAA
AGGGGTTCCAGGCAGTGTCTCTTCCCCCCCCTCCCTCCCTCCGTCCCTCC
ATCGTTTTTGACGTTTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGG
TCCTTTTCTTCAAACGTTCACACGGAATCTCCAGCAGCATTTCACGCAGG
ATTCTCTTTACCCCGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAA
CAAGAAGACGATTGGTACATTCTGGCTGCTGATCCCGAACGCTACATGTT
TGTCTGGCCTGGTGTGGTTTTACCGGTGGCGTCGTTTTTTTCCCGCACCC
CCTCCCTTCCTCCTTCCCTCTACCCTTCCCTCGAGGAGACGGCGCGCAAG
GTGGGGGTGAAGGGAGGGATCGAGGGCATGTGCAAAGTGGACAACACTCA
GTGTAATTTGAAGTAAATGCATGAATTGACTTGCCTCGTAACATGCGGTC
CTTCCGACTTGGCCTGTCAGATGCGGTGCGGCGACATGTACAAGATGGAC
GTCCTTCAAAACTTCCACACGTGTGCCATCAGCCAGCACCAATGCGTGCC
GCAACGAGTGGAAGAAGAAAATAAGCTCCCCGACCCCTCCCTCCTTGTTC
CCTCCCTCTCCCTCCCCTCCCTCAACGGCGAGTGGTTCATCACCCACGGC
ATTAACCCCATCATGGACTGTTTTCCCTGTCAGCACCATCAGGCGCTGAA
GGAGGCAAAGGGGTTCCAGGCAGTGTCTCTTCCCCCCCCTCCCTCCCTCC
GTCCCTCCATCGTTTTTGACGTTTCCTATCAGGTGTCTCATGACCAGGGG
AAGGAAGGTCCTTTTCTTCAAACGTTCACACGGAATCTCCAGCAGCATTT
CACGCAGGATTCTCTTTACCCCGGCCTCCTCCACGCTCGAGCTCAAGGCT
ATCTCCAACAAGAAGACGATTGGTACATTCTGGCTGCTGATCCCGAACGC
TACATGTTTGTCTGGCCTGGTGTGGTTTTACCGGTGGCGTCGTTTTTTTC
CCGCACCCCCTCCCTTCCTCCTTCCCTCTACCCTTCCCTCGAGGAGACGG
CGCGCAAGGTGGGGGTGAAGGGAGGGATCGAGGGCATGTGCAAAGTGGAC
AACACTCAGTGTAATTTGAAGTAAATGCATGAATTGACTTGCCTCGTAAC
ATGCGGTCCTTCCGACTTGGCCTGTCAGATGCGGTGCGGCGACATGTACA
AGATGGACGTCCTTCAAAACTTCCACACGTGTGCCATCAGCCAGCACCAA
TGCGTGCCGCAACGAGTGGAAGAAGAAAATAAGCTCCCCGACCCCTCCCT
CCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAACGGCGAGTGGTTCATCA
CCCACGGCATTAACCCCATCATGGACTGTTTTCCCTGTCAGCACCATCAG
GCGCTGAAGGAGGCAAAGGGGTTCCAGGCAGTGTCTCTTCCCCCCCCTCC
CTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCCTATCAGGTGTCTCATG
ACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTTCACACGGAATCTCCAG
CAGCATTTCACGCAGGATTCTCTTTACCCCGGCCTCCTCCACGCTCGAGC
TCAAGGCTATCTCCAACAAGAAGACGATTGGTACATTCTGGCTGCTGATC
CCGAACGCTACATGTTTGTCTGGCCTGGTGTGGTTTTACCGGTGGCGTCG
TTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCCTCTACCCTTCCCTCGA
GGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGGATCGAGGGCATGTGCA
AAGTGGACAACACTCAGTGTAATTTGAAGTAAATGCATGAATTGACTTGC
CTCGTAACATGCGGTCCTTCCGACTTGGCCTGTCAGATGCGGTGCGGCGA
CATGTACAAGATGGACGTCCTTCAAAACTTCCACACGTGTGCCATCAGCC
AGCACCAATGCGTGCCGCAACGAGTGGAAGAAGAAAATAAGCTCCCCGAC
CCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAACGGCGAGTG
GTTCATCACCCACGGCATTAACCCCATCATGGACTGTTTTCCCTGTCAGC
ACCATCAGGCGCTGAAGGAGGCAAAGGGGTTCCAGGCAGTGTCTCTTCCC
CCCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCCTATCAGGT
GTCTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTTCACACGGA
ATCTCCAGCAGCATTTCACGCAGGATTCTCTTTACCCCGGCCTCCTCCAC
GCTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATTGGTACATTCTGGC
TGCTGATCCCGAACGCTACATGTTTGTCTGGCCTGGTGTGGTTTTACCGG
TGGCGTCGTTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCCTCTACCCT
TCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGGATCGAGGG
CATGTGCAAAGTGGACAACACTCAGTGTAATTTGAAGTAAATGCATGAAT
TGACTTGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTGTCAGATGCGG
TGCGGCGACATGTACAAGATGGACGTCCTTCAAAACTTCCACACGTGTGC
CATCAGCCAGCACCAATGCGTGCCGCAACGAGTGGAAGAAGAAAATAAGC
TCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAAC
GGCGAGTGGTTCATCACCCACGGCATTAACCCCATCATGGACTGTTTTCC
CTGTCAGCACCATCAGGCGCTGAAGGAGGCAAAGGGGTTCCAGGCAGTGT
CTCTTCCCCCCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCC
TATCAGGTGTCTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTT
CACACGGAATCTCCAGCAGCATTTCACGCAGGATTCTCTTTACCCCGGCC
TCCTCCACGCTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATTGGTAC
ATTCTGGCTGCTGATCCCGAACGCTACATGTTTGTCTGGCCTGGTGTGGT
TTTACCGGTGGCGTCGTTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCC
TCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGG
ATCGAGGGCATGTGCAAAGTGGACAACACTCAGTGTAATTTGAAGTAAAT
GCATGAATTGACTTGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTGTC
AGATGCGGTGCGGCGACATGTACAAGATGGACGTCCTTCAAAACTTCCAC
ACGTGTGCCATCAGCCAGCACCAATGCGTGCCGCAACGAGTGGAAGAAGA
AAATAAGCTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCT
CCCTCAACGGCGAGTGGTTCATCACCCACGGCATTAACCCCATCATGGAC
TGTTTTCCCTGTCAGCACCATCAGGCGCTGAAGGAGGCAAAGGGGTTCCA
GGCAGTGTCTCTTCCCCCCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTG
ACGTTTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGGTCCTTTTCTT
CAAACGTTCACACGGAATCTCCAGCAGCATTTCACGCAGGATTCTCTTTA
CCCCGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAACAAGAAGACG
ATTGGTACATTCTGGCTGCTGATCCCGAACGCTACATGTTTGTCTGGCCT
GGTGTGGTTTTACCGGTGGCGTCGTTTTTTTCCCGCACCCCCTCCCTTCC
TCCTTCCCTCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTGA
AGGGAGGGATCGAGGGCATGTGCAAAGTGGACAACACTCAGTGTAATTTG
AAGTAAATGCATGAATTGACTTGCCTCGTAACATGCGGTCCTTCCGACTT
GGCCTGTCAGATGCGGTGCGGCGACATGTACAAGATGGACGTCCTTCAAA
ACTTCCACACGTGTGCCATCAGCCAGCACCAATGCGTGCCGCAACGAGTG
GAAGAAGAAAATAAGCTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTC
CCTCCCCTCCCTCAACGGCGAGTGGTTCATCACCCACGGCATTAACCCCA
TCATGGACTGTTTTCCCTGTCAGCACCATCAGGCGCTGAAGGAGGCAAAG
GGGTTCCAGGCAGTGTCTCTTCCCCCCCCTCCCTCCCTCCGTCCCTCCAT
CGTTTTTGACGTTTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGGTC
CTTTTCTTCAAACGTTCACACGGAATCTCCAGCAGCATTTCACGCAGGAT
TCTCTTTACCCCGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAACA
AGAAGACGATTGGTACATTCTGGCTGCTGATCCCGAACGCTACATGTTTG
TCTGGCCTGGTGTGGTTTTACCGGTGGCGTCGTTTTTTTCCCGCACCCCC
TCCCTTCCTCCTTCCCTCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGT
GGGGGTGAAGGGAGGGATCGAGGGCATGTGCAAAGTGGACAACACTCAGT
GTAATTTGAAGTAA back to top
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