jgi.p|Nanoce1779_2|672025, mRNA_6461 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672025
Unique NamemRNA_6461
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_15:705124..705925 -

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Properties
Property NameValue
TranscriptId672111
TrackFilteredModels2
ProteinId672025
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:705124..705925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672025gene_6461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672025mRNA_6461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6461CDS_6461Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6461 ID=mRNA_6461|Name=jgi.p|Nanoce1779_2|672025|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
ACAGCATCAAGGGGTCAGAATTATGACGGCTCGCCCTATCGACTACAGCA
AATGGGATCACCTGGAGGCTTCGGACGACGACGAGGAAAACGACGAAGAG
GAGCGACGAGGCCTTCCCCGCGTGACGCATTTTGACGAGCCCATGTCCGT
CACCCTTGGTGGGAGTCAGGATGGCTCCACCCATCCCTCCGCCTCGCCCT
CCCCCCCTCTCTCCTCTTCCTCCACCTTTCCCTCCTCGTCCACGCTCAAA
GCCCACCCACGGAGTACTATCGAAGACGTGGCCGAGAACGGTCAATCCCT
CCCGGCATACGCCTGGCGACAAGACAAGCGAGAGGCAATAGTGCATGTGT
GGGTGCCCCCGAGTACCGTAGCCAAAGACGTCTGTGTCTCGTACGACAAG
GAAAGTCGGCACCTTAAGGTACAGGCTCATCCAACCTCCCTCCCTCCCGT
CCTCGTGGAAGGCACACTGGCCAATCCGATCTCCTTGGAAGAGGAGGACG
AAGGGCTCGAGTGGGAGGTGGTTGGGGAACGAGGAGGAGGGGAGGAGGGA
GGGAAGGAGGGAGGGAGGCGGGCAGTACGATTGACCTTTGTTAAAGAGAC
GCCGAGGGCAGATATGGTGCGTTGGTGGTCCAGGGTGATGGAGGGGGAAG
AGGAGATTGACACACAGAAGATAGAAGGGAGGAGTAAGAAGATGAATTTT
CAAGGGGCTTGGGAGGAGGCACAAAAGCTGTTTATGGAGGGGGTGGAGAG
ACGGAGGAAAGAGGGGCCGGTGGAAGTGGACATTGGGCAGCGGTAGCAAG
GG
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protein sequence of jgi.p|Nanoce1779_2|672025

>mRNA_6461-protein ID=mRNA_6461-protein|Name=jgi.p|Nanoce1779_2|672025|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTARPIDYSKWDHLEASDDDEENDEEERRGLPRVTHFDEPMSVTLGGSQD
GSTHPSASPSPPLSSSSTFPSSSTLKAHPRSTIEDVAENGQSLPAYAWRQ
DKREAIVHVWVPPSTVAKDVCVSYDKESRHLKVQAHPTSLPPVLVEGTLA
NPISLEEEDEGLEWEVVGERGGGEEGGKEGGRRAVRLTFVKETPRADMVR
WWSRVMEGEEEIDTQKIEGRSKKMNFQGAWEEAQKLFMEGVERRRKEGPV
EVDIGQR*
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mRNA from alignment at scaffold_15:705124..705925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6461 ID=mRNA_6461|Name=jgi.p|Nanoce1779_2|672025|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at scaffold_15:705124..705925- (Nannochloropsis oceanica)
ACAGCATCAAGGGGTCAGAATTATGACGGCTCGCCCTATCGACTACAGCA
AATGGGATCACCTGGAGGCTTCGGACGACGACGAGGAAAACGACGAAGAG
GAGCGACGAGGCCTTCCCCGCGTGACGCATTTTGACGAGCCCATGTCCGT
CACCCTTGGTGGGAGTCAGGATGGCTCCACCCATCCCTCCGCCTCGCCCT
CCCCCCCTCTCTCCTCTTCCTCCACCTTTCCCTCCTCGTCCACGCTCAAA
GCCCACCCACGGAGTACTATCGAAGACGTGGCCGAGAACGGTCAATCCCT
CCCGGCATACGCCTGGCGACAAGACAAGCGAGAGGCAATAGTGCATGTGT
GGGTGCCCCCGAGTACCGTAGCCAAAGACGTCTGTGTCTCGTACGACAAG
GAAAGTCGGCACCTTAAGGTACAGGCTCATCCAACCTCCCTCCCTCCCGT
CCTCGTGGAAGGCACACTGGCCAATCCGATCTCCTTGGAAGAGGAGGACG
AAGGGCTCGAGTGGGAGGTGGTTGGGGAACGAGGAGGAGGGGAGGAGGGA
GGGAAGGAGGGAGGGAGGCGGGCAGTACGATTGACCTTTGTTAAAGAGAC
GCCGAGGGCAGATATGGTGCGTTGGTGGTCCAGGGTGATGGAGGGGGAAG
AGGAGATTGACACACAGAAGATAGAAGGGAGGAGTAAGAAGATGAATTTT
CAAGGGGCTTGGGAGGAGGCACAAAAGCTGTTTATGGAGGGGGTGGAGAG
ACGGAGGAAAGAGGGGCCGGTGGAAGTGGACATTGGGCAGCGGTAGCAAG
GG
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Coding sequence (CDS) from alignment at scaffold_15:705124..705925-

>mRNA_6461 ID=mRNA_6461|Name=jgi.p|Nanoce1779_2|672025|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_15:705124..705925- (Nannochloropsis oceanica)
ATGACGGCTCGCCCTATCGACTACAGCAAATGGGATCACCTGGAGGCTTC
GGACGACGACGAGGAAAACGACGAAGAGGAGCGACGAGGCCTTCCCCGCG
TGACGCATTTTGACGAGCCCATGTCCGTCACCCTTGGTGGGAGTCAGGAT
GGCTCCACCCATCCCTCCGCCTCGCCCTCCCCCCCTCTCTCCTCTTCCTC
CACCTTTCCCTCCTCGTCCACGCTCAAAGCCCACCCACGGAGTACTATCG
AAGACGTGGCCGAGAACGGTCAATCCCTCCCGGCATACGCCTGGCGACAA
GACAAGCGAGAGGCAATAGTGCATGTGTGGGTGCCCCCGAGTACCGTAGC
CAAAGACGTCTGTGTCTCGTACGACAAGGAAAGTCGGCACCTTAAGGTAC
AGGCTCATCCAACCTCCCTCCCTCCCGTCCTCGTGGAAGGCACACTGGCC
AATCCGATCTCCTTGGAAGAGGAGGACGAAGGGCTCGAGTGGGAGGTGGT
TGGGGAACGAGGAGGAGGGGAGGAGGGAGGGAAGGAGGGAGGGAGGCGGG
CAGTACGATTGACCTTTGTTAAAGAGACGCCGAGGGCAGATATGGTGCGT
TGGTGGTCCAGGGTGATGGAGGGGGAAGAGGAGATTGACACACAGAAGAT
AGAAGGGAGGAGTAAGAAGATGAATTTTCAAGGGGCTTGGGAGGAGGCAC
AAAAGCTGTTTATGGAGGGGGTGGAGAGACGGAGGAAAGAGGGGCCGGTG
GAAGTGGACATTGGGCAGCGGTAG
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Synonyms
Publications