jgi.p|Nanoce1779_2|650074, mRNA_6460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|650074
Unique NamemRNA_6460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length653
Alignment locationscaffold_15:702740..703392 +

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Properties
Property NameValue
TranscriptId650160
TrackFilteredModels2
ProteinId650074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:702740..703392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650074gene_6460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650074mRNA_6460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6460CDS_6460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6460 ID=mRNA_6460|Name=jgi.p|Nanoce1779_2|650074|organism=Nannochloropsis oceanica|type=mRNA|length=653bp
CTCATTCCTCATCTCCTCATTGAGGCTCTATTTAAGTGCTTCTCCTTACA
TCGTCGCTGTCCTAGATGGGGTTCATTTTCTCTGTTCACTTTTCATCTCT
TTCCTTTCCGTCCTCCCTTCCTTTTCCTCTCTCCTCCCGGCTTCTTGTTT
ACTTTCTTCCCTCCCCCCTCAGTATCCTCCTCGCTTCCCTCCCTTTCCTC
CTTACCTCCCTCCACCTCCTCCTCCTCCTCTTCATTGATCATCTGGCCCA
CTTTCCATTCGTTTGTCTTTCTCCCTTCCTATTACAATCCCTCTCTCGCC
TCCTCCTTATGTCCCTTCACCCCTCCTTCGCCTCCCTCTTTCTCCTTCCC
ATTTTTTTCTACTGCTTCCTCCACTTCCGTCGTCTCTTCCTCCTCCTCTG
TCTCGTTATTTTCTTCCATCTTCATCCTTTCTTCATCCTCATTCACCTCC
TCTTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCTTTCTCCTGCTCTTC
CTCTTCCTCTTTCTCCTTCTCCTCCTCTTCCTCCTGCCTCCCAAGGAAAG
GCAACACCGCACACAGCTTTGTCTTCCACGCAAACACTTCCCTCCCTCCC
TCCCTCTCTCCCTTCTTCTTCCCTCCCAGAGAGAGCACACCCATCCTCAC
CAT
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protein sequence of jgi.p|Nanoce1779_2|650074

>mRNA_6460-protein ID=mRNA_6460-protein|Name=jgi.p|Nanoce1779_2|650074|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
LIPHLLIEALFKCFSLHRRCPRWGSFSLFTFHLFPFRPPFLFLSPPGFLF
TFFPPPSVSSSLPSLSSLPPSTSSSSSSLIIWPTFHSFVFLPSYYNPSLA
SSLCPFTPPSPPSFSFPFFSTASSTSVVSSSSSVSLFSSIFILSSSSFTS
SFSFSSSSSSSSFSCSSSSSFSFSSSSSCLPRKGNTAHSFVFHANTSLPP
SLSPFFFPPRESTPILT
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mRNA from alignment at scaffold_15:702740..703392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6460 ID=mRNA_6460|Name=jgi.p|Nanoce1779_2|650074|organism=Nannochloropsis oceanica|type=mRNA|length=653bp|location=Sequence derived from alignment at scaffold_15:702740..703392+ (Nannochloropsis oceanica)
CTCATTCCTCATCTCCTCATTGAGGCTCTATTTAAGTGCTTCTCCTTACA
TCGTCGCTGTCCTAGATGGGGTTCATTTTCTCTGTTCACTTTTCATCTCT
TTCCTTTCCGTCCTCCCTTCCTTTTCCTCTCTCCTCCCGGCTTCTTGTTT
ACTTTCTTCCCTCCCCCCTCAGTATCCTCCTCGCTTCCCTCCCTTTCCTC
CTTACCTCCCTCCACCTCCTCCTCCTCCTCTTCATTGATCATCTGGCCCA
CTTTCCATTCGTTTGTCTTTCTCCCTTCCTATTACAATCCCTCTCTCGCC
TCCTCCTTATGTCCCTTCACCCCTCCTTCGCCTCCCTCTTTCTCCTTCCC
ATTTTTTTCTACTGCTTCCTCCACTTCCGTCGTCTCTTCCTCCTCCTCTG
TCTCGTTATTTTCTTCCATCTTCATCCTTTCTTCATCCTCATTCACCTCC
TCTTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCTTTCTCCTGCTCTTC
CTCTTCCTCTTTCTCCTTCTCCTCCTCTTCCTCCTGCCTCCCAAGGAAAG
GCAACACCGCACACAGCTTTGTCTTCCACGCAAACACTTCCCTCCCTCCC
TCCCTCTCTCCCTTCTTCTTCCCTCCCAGAGAGAGCACACCCATCCTCAC
CAT
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Coding sequence (CDS) from alignment at scaffold_15:702740..703392+

>mRNA_6460 ID=mRNA_6460|Name=jgi.p|Nanoce1779_2|650074|organism=Nannochloropsis oceanica|type=CDS|length=653bp|location=Sequence derived from alignment at scaffold_15:702740..703392+ (Nannochloropsis oceanica)
CTCATTCCTCATCTCCTCATTGAGGCTCTATTTAAGTGCTTCTCCTTACA
TCGTCGCTGTCCTAGATGGGGTTCATTTTCTCTGTTCACTTTTCATCTCT
TTCCTTTCCGTCCTCCCTTCCTTTTCCTCTCTCCTCCCGGCTTCTTGTTT
ACTTTCTTCCCTCCCCCCTCAGTATCCTCCTCGCTTCCCTCCCTTTCCTC
CTTACCTCCCTCCACCTCCTCCTCCTCCTCTTCATTGATCATCTGGCCCA
CTTTCCATTCGTTTGTCTTTCTCCCTTCCTATTACAATCCCTCTCTCGCC
TCCTCCTTATGTCCCTTCACCCCTCCTTCGCCTCCCTCTTTCTCCTTCCC
ATTTTTTTCTACTGCTTCCTCCACTTCCGTCGTCTCTTCCTCCTCCTCTG
TCTCGTTATTTTCTTCCATCTTCATCCTTTCTTCATCCTCATTCACCTCC
TCTTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCTTTCTCCTGCTCTTC
CTCTTCCTCTTTCTCCTTCTCCTCCTCTTCCTCCTGCCTCCCAAGGAAAG
GCAACACCGCACACAGCTTTGTCTTCCACGCAAACACTTCCCTCCCTCCC
TCCCTCTCTCCCTTCTTCTTCCCTCCCAGAGAGAGCACACCCATCCTCAC
CAT
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Synonyms
Publications