jgi.p|Nanoce1779_2|595112, mRNA_6459 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595112
Unique Name	mRNA_6459
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1160
Alignment location	scaffold_15:700322..702427 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595198
Track	FilteredModels2
ProteinId	595112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:700322..702427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595112	gene_6459	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595112	mRNA_6459-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6459	CDS_6459	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:700322..702427+
coding sequence from alignment at scaffold_15:700322..702427+

mRNA sequence

>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Nanoce1779_2|595112|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
ACAGAGCAACGAAACAGCAGCAGGAGCAGCAGCACTCCTTGCGTCCTTTT
TCATGCCCAGCATCGTGTCCCACTACCGTCTTTGCTTTACCGTGCTTCTG
CTGTCGCTTGCGCTTGACATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCA
ATTAGCCCTTCGGAGCCGCCCTTCTTCTGCCGCCTCTGCCACAGGAGGCA
TCGTCGCCGCACGTCGTCCTTTTTCGGTTGCGCGCCTGCCCATCCTGCGG
GCACAGCGCTGTGTATCTTCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGC
TTTTTCGTCCTCTACGCGGTTGATGGCTGGCGCGGCCGCTCCTGACCCGC
GGATTAAAGTACGAGCCTCTCACATCCTGGTAAAGACCGAAGAGGAGGCT
GATGCCCTGCTGGCCGTGTTGGAAAATGGCGCTGATTTTGGAGAGCTAGC
AATGTTAGAAAGCGACTGCCCCTCCCGCAAGCAAGGCGGGGACCTGGGAT
GGTTTGGTGCGGGGCAGATGGTACCTGCTTTCGAGGAGGCCTGCTTTACC
AACGATCCTGGCGCCTTTGTCAAGGTGCAGACTGAGTTCGGTTATCACAT
CATTCAGGTCACCGGCAAGGCCACAGGTCCCGGTGACTGGCATCCGTCTC
AGTTAGGGGATTTACTAGAAGAAGGGAAAGAGGCGACCAAAGACGTCCAA
CTGATAGACGTGCGCGAGCCAGACGAGCTACTCCGAGCGGATATCACGGG
TGCCGGGTTTTTAAACCTCCCCTTGTCACAATTTCCTTCTTGGCGGGAAA
AGATTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAAGACGATCGTGCTG
TGTCATCATGGAGGAAGGTCGATGCAAGTGGCTTCATTCCTGACGGGTCA
GGCGGGATTTGAGAGTGTGTTTAATTTATCAGGGGGTATCAACATGTACT
CGCAGTTGGTGGATGATAGCATTCCCATGTATTGAATGTGACCTAAATAT
TACTGGTTGCGATGGTGATAGTGATAGCATTCCCATGTATTGAATGTGAC
CTAAATATTACTGGTTGCGATGGTGATAGTGATAGCATTCCCATGTATTG
AATGTGACCTAAATATTACTGGTTGCGATGGTGATAGTGATAGCATTCCC
ATGTATTGAA

protein sequence of jgi.p|Nanoce1779_2|595112

>mRNA_6459-protein ID=mRNA_6459-protein|Name=jgi.p|Nanoce1779_2|595112|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPSIVSHYRLCFTVLLLSLALDMLSRPAAAFCQLALRSRPSSAASATGGI
VAARRPFSVARLPILRAQRCVSSPLSPSFLPPAFSSSTRLMAGAAAPDPR
IKVRASHILVKTEEEADALLAVLENGADFGELAMLESDCPSRKQGGDLGW
FGAGQMVPAFEEACFTNDPGAFVKVQTEFGYHIIQVTGKATGPGDWHPSQ
LGDLLEEGKEATKDVQLIDVREPDELLRADITGAGFLNLPLSQFPSWREK
ILSGELLDKSKKTIVLCHHGGRSMQVASFLTGQAGFESVFNLSGGINMYS
QLVDDSIPMY*

mRNA from alignment at scaffold_15:700322..702427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Nanoce1779_2|595112|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at scaffold_15:700322..702427+ (Nannochloropsis oceanica)
ACAGAGCAACGAAACAGCAGCAGGAGCAGCAGCACTCCTTGCGTCCTTTT
TCATGCCCAGCATCGGTAAGCATGTTGTGAGAGGAAGAGGAGGTCGAAAG
TCACCCGAAGTATCCTCAACCGTATACATGCCGTCCTTCCCTCTGAATAG
TGTCCCACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTCGCTTGCGCTT
GACATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAGCCCTTCGGAG
CCGCCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTCGCCGCACGTC
GTCCTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACAGCGCTGTGTA
TCTTCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTTCGTCCTCTAC
GCGGTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATTAAAGTACGAG
CCTCTCACATCCTGGTAAGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAA
GAAGGGAGGGAGCAAGACGGGTTTGTATGTAATTTCAGGTGGGTGGGATA
GATTCCTCTAGATGTGCGATCTTGATATACTTTTTTTGTCATGCGTCATT
CATCCGCCCTCCTTACCTCCCTCTCTTCGCCCCTATCGTCCTCGTTACAG
GTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTGTTGGAAAATGG
CGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTGCCCCTCCCGCA
AGCAAGGCGGGGACCTGGGATGGTTTGGGTACGTCCCTTCCTCCCTCCCT
TCCTCCCTTCCTCCCTCTATCCCTCTCTCCCTCCCTCCCTCCCTCTCTCC
CTCCCTCCCTCTTTCCCTCTCTCCCTCTCTCCCTCCCTCCCTACCTCCCT
CCTTCCCCTTTCTCCCGCCCTGCCTTTGCCCTCTCCATTCTTAATCTTGA
GGTCACGTTAGCCTTGCGTTTGGTAGGCGTGACATTTTACTTCTCTGTAT
CTTTAGGGTGCAGCCGCAGCGGCTTGTTTGATTCTGCGGATGTTTCAAAC
TCCTTGCTATTCAGCCTCACCCTCTTGTAATCCCTCCCTTCCTCCCACCC
TCCCTCCCTCCTCTCTTTTCCCTTTCCAGTGCGGGGCAGATGGTACCTGC
TTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTTTGTCAAGGTGC
AGACTGAGTTCGGTTATCACATCATTCAGGTATGGGACGGAGGGAGGGGC
GGAGGGAGGGGTGGAGGGAGGGACGGAGGGAGGGGCGGAGGGAGGGACGG
AGGGAGGGGCGGAGGGAGGAGGCACCGGACCCCAGTATCAACAACAAGTG
TAAACCAAACTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTCTTGGCAGGTCACCGGCAAGGCCACAGGTCCCGGTGACTGGCATC
CGTCTCAGTTAGGGGATTTACTAGAAGAAGGGAAAGAGGCGACCAAAGAC
GTCCAACTGATAGACGTGCGCGAGCCAGACGAGCTACTCCGAGCGGATAT
CACGGGTAAAGAGGAGGGGAAGGAGGGAGGGGGGAAAGGGAGAAGGCGGT
AGTCGAGAGGGAGGGGGAGGGGTTTAAATTTCTTGAGCTTATGCCTACAT
CTATCTACACCTCTCTCTCCCTCCCTCCCTCCCTCCCTTCCCAAGGTGCC
GGGTTTTTAAACCTCCCCTTGTCACAATTTCCTTCTTGGCGGGAAAAGAT
TCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAAGACGATCGTGCTGTGTC
ATCATGGAGGAAGGTCGATGCAAGTGGCTTCATTCCTGACGGGTCAGGCG
GGATTTGAGAGTGTGTTTAATTTATCAGGGGGTATCAACATGTACTCGCA
GTTGGTGGATGATAGCATTCCCATGTATTGAATGTGACCTAAATATTACT
GGTTGCGATGGTGATAGTGATAGCATTCCCATGTATTGAATGTGACCTAA
ATATTACTGGTTGCGATGGTGATAGTGATAGCATTCCCATGTATTGAATG
TGACCTAAATATTACTGGTTGCGATGGTGATAGTGATAGCATTCCCATGT
ATTGAA

Coding sequence (CDS) from alignment at scaffold_15:700322..702427+

>mRNA_6459 ID=mRNA_6459|Name=jgi.p|Nanoce1779_2|595112|organism=Nannochloropsis oceanica|type=CDS|length=5598bp|location=Sequence derived from alignment at scaffold_15:700322..702427+ (Nannochloropsis oceanica)
ATGCCCAGCATCGTGTCCCACTACCGTCTTTGCTTTACCGTGCTTCTGCT
GTCGCTTGCGCTTGACATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAAT
TAGCCCTTCGGAGCCGCCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATC
GTCGCCGCACGTCGTCCTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGC
ACAGCGCTGTGTATCTTCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTT
TTTCGTCCTCTACGCGGTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGG
ATTAAAGTACGAGCCTCTCACATCCTGGTAAAGACCGAAGAGGAGGCTGA
TGCCCTGCTGGCCGTGTTGGAAAATGGCGCTGATTTTGGAGAGCTAGCAA
TGTTAGAAAGCGACTGCCCCTCCCGCAAGCAAGGCGGGGACCTGGGATGG
TTTGGTGCGGGGCAGATGGTACCTGCTTTCGAGGAGGCCTGCTTTACCAA
CGATCCTGGCGCCTTTGTCAAGGTGCAGACTGAGTTCGGTTATCACATCA
TTCAGGTCACCGGCAAGGCCACAGGTCCCGGTGACTGGCATCCGTCTCAG
TTAGGGGATTTACTAGAAGAAGGGAAAGAGGCGACCAAAGACGTCCAACT
GATAGACGTGCGCGAGCCAGACGAGCTACTCCGAGCGGATATCACGGGTG
CCGGGTTTTTAAACCTCCCCTTGTCACAATTTCCTTCTTGGCGGGAAAAG
ATTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAAGACGATCGTGCTGTG
TCATCATGGAGGAAGGTCGATGCAAGTGGCTTCATTCCTGACGGGTCAGG
CGGGATTTGAGAGTGTGTTTAATTTATCAGGGGGTATCAACATGTACTCG
CAGTTGGTGGATGATAGCATTCCCATGTATTGAATGCCCAGCATCGTGTC
CCACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTCGCTTGCGCTTGACA
TGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAGCCCTTCGGAGCCGC
CCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTCGCCGCACGTCGTCC
TTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACAGCGCTGTGTATCTT
CTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTTCGTCCTCTACGCGG
TTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATTAAAGTACGAGCCTC
TCACATCCTGGTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTGT
TGGAAAATGGCGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTGC
CCCTCCCGCAAGCAAGGCGGGGACCTGGGATGGTTTGGTGCGGGGCAGAT
GGTACCTGCTTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTTTG
TCAAGGTGCAGACTGAGTTCGGTTATCACATCATTCAGGTCACCGGCAAG
GCCACAGGTCCCGGTGACTGGCATCCGTCTCAGTTAGGGGATTTACTAGA
AGAAGGGAAAGAGGCGACCAAAGACGTCCAACTGATAGACGTGCGCGAGC
CAGACGAGCTACTCCGAGCGGATATCACGGGTGCCGGGTTTTTAAACCTC
CCCTTGTCACAATTTCCTTCTTGGCGGGAAAAGATTCTTTCGGGCGAGCT
GCTGGACAAGAGCAAGAAGACGATCGTGCTGTGTCATCATGGAGGAAGGT
CGATGCAAGTGGCTTCATTCCTGACGGGTCAGGCGGGATTTGAGAGTGTG
TTTAATTTATCAGGGGGTATCAACATGTACTCGCAGTTGGTGGATGATAG
CATTCCCATGTATTGAATGCCCAGCATCGTGTCCCACTACCGTCTTTGCT
TTACCGTGCTTCTGCTGTCGCTTGCGCTTGACATGCTTAGCCGCCCAGCC
GCTGCCTTCTGTCAATTAGCCCTTCGGAGCCGCCCTTCTTCTGCCGCCTC
TGCCACAGGAGGCATCGTCGCCGCACGTCGTCCTTTTTCGGTTGCGCGCC
TGCCCATCCTGCGGGCACAGCGCTGTGTATCTTCTCCGCTCTCTCCTTCT
TTCCTTCCCCCAGCTTTTTCGTCCTCTACGCGGTTGATGGCTGGCGCGGC
CGCTCCTGACCCGCGGATTAAAGTACGAGCCTCTCACATCCTGGTAAAGA
CCGAAGAGGAGGCTGATGCCCTGCTGGCCGTGTTGGAAAATGGCGCTGAT
TTTGGAGAGCTAGCAATGTTAGAAAGCGACTGCCCCTCCCGCAAGCAAGG
CGGGGACCTGGGATGGTTTGGTGCGGGGCAGATGGTACCTGCTTTCGAGG
AGGCCTGCTTTACCAACGATCCTGGCGCCTTTGTCAAGGTGCAGACTGAG
TTCGGTTATCACATCATTCAGGTCACCGGCAAGGCCACAGGTCCCGGTGA
CTGGCATCCGTCTCAGTTAGGGGATTTACTAGAAGAAGGGAAAGAGGCGA
CCAAAGACGTCCAACTGATAGACGTGCGCGAGCCAGACGAGCTACTCCGA
GCGGATATCACGGGTGCCGGGTTTTTAAACCTCCCCTTGTCACAATTTCC
TTCTTGGCGGGAAAAGATTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGA
AGACGATCGTGCTGTGTCATCATGGAGGAAGGTCGATGCAAGTGGCTTCA
TTCCTGACGGGTCAGGCGGGATTTGAGAGTGTGTTTAATTTATCAGGGGG
TATCAACATGTACTCGCAGTTGGTGGATGATAGCATTCCCATGTATTGAA
TGCCCAGCATCGTGTCCCACTACCGTCTTTGCTTTACCGTGCTTCTGCTG
TCGCTTGCGCTTGACATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATT
AGCCCTTCGGAGCCGCCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCG
TCGCCGCACGTCGTCCTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCA
CAGCGCTGTGTATCTTCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTT
TTCGTCCTCTACGCGGTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGA
TTAAAGTACGAGCCTCTCACATCCTGGTAAAGACCGAAGAGGAGGCTGAT
GCCCTGCTGGCCGTGTTGGAAAATGGCGCTGATTTTGGAGAGCTAGCAAT
GTTAGAAAGCGACTGCCCCTCCCGCAAGCAAGGCGGGGACCTGGGATGGT
TTGGTGCGGGGCAGATGGTACCTGCTTTCGAGGAGGCCTGCTTTACCAAC
GATCCTGGCGCCTTTGTCAAGGTGCAGACTGAGTTCGGTTATCACATCAT
TCAGGTCACCGGCAAGGCCACAGGTCCCGGTGACTGGCATCCGTCTCAGT
TAGGGGATTTACTAGAAGAAGGGAAAGAGGCGACCAAAGACGTCCAACTG
ATAGACGTGCGCGAGCCAGACGAGCTACTCCGAGCGGATATCACGGGTGC
CGGGTTTTTAAACCTCCCCTTGTCACAATTTCCTTCTTGGCGGGAAAAGA
TTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAAGACGATCGTGCTGTGT
CATCATGGAGGAAGGTCGATGCAAGTGGCTTCATTCCTGACGGGTCAGGC
GGGATTTGAGAGTGTGTTTAATTTATCAGGGGGTATCAACATGTACTCGC
AGTTGGTGGATGATAGCATTCCCATGTATTGAATGCCCAGCATCGTGTCC
CACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTCGCTTGCGCTTGACAT
GCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAGCCCTTCGGAGCCGCC
CTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTCGCCGCACGTCGTCCT
TTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACAGCGCTGTGTATCTTC
TCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTTCGTCCTCTACGCGGT
TGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATTAAAGTACGAGCCTCT
CACATCCTGGTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTGTT
GGAAAATGGCGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTGCC
CCTCCCGCAAGCAAGGCGGGGACCTGGGATGGTTTGGTGCGGGGCAGATG
GTACCTGCTTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTTTGT
CAAGGTGCAGACTGAGTTCGGTTATCACATCATTCAGGTCACCGGCAAGG
CCACAGGTCCCGGTGACTGGCATCCGTCTCAGTTAGGGGATTTACTAGAA
GAAGGGAAAGAGGCGACCAAAGACGTCCAACTGATAGACGTGCGCGAGCC
AGACGAGCTACTCCGAGCGGATATCACGGGTGCCGGGTTTTTAAACCTCC
CCTTGTCACAATTTCCTTCTTGGCGGGAAAAGATTCTTTCGGGCGAGCTG
CTGGACAAGAGCAAGAAGACGATCGTGCTGTGTCATCATGGAGGAAGGTC
GATGCAAGTGGCTTCATTCCTGACGGGTCAGGCGGGATTTGAGAGTGTGT
TTAATTTATCAGGGGGTATCAACATGTACTCGCAGTTGGTGGATGATAGC
ATTCCCATGTATTGAATGCCCAGCATCGTGTCCCACTACCGTCTTTGCTT
TACCGTGCTTCTGCTGTCGCTTGCGCTTGACATGCTTAGCCGCCCAGCCG
CTGCCTTCTGTCAATTAGCCCTTCGGAGCCGCCCTTCTTCTGCCGCCTCT
GCCACAGGAGGCATCGTCGCCGCACGTCGTCCTTTTTCGGTTGCGCGCCT
GCCCATCCTGCGGGCACAGCGCTGTGTATCTTCTCCGCTCTCTCCTTCTT
TCCTTCCCCCAGCTTTTTCGTCCTCTACGCGGTTGATGGCTGGCGCGGCC
GCTCCTGACCCGCGGATTAAAGTACGAGCCTCTCACATCCTGGTAAAGAC
CGAAGAGGAGGCTGATGCCCTGCTGGCCGTGTTGGAAAATGGCGCTGATT
TTGGAGAGCTAGCAATGTTAGAAAGCGACTGCCCCTCCCGCAAGCAAGGC
GGGGACCTGGGATGGTTTGGTGCGGGGCAGATGGTACCTGCTTTCGAGGA
GGCCTGCTTTACCAACGATCCTGGCGCCTTTGTCAAGGTGCAGACTGAGT
TCGGTTATCACATCATTCAGGTCACCGGCAAGGCCACAGGTCCCGGTGAC
TGGCATCCGTCTCAGTTAGGGGATTTACTAGAAGAAGGGAAAGAGGCGAC
CAAAGACGTCCAACTGATAGACGTGCGCGAGCCAGACGAGCTACTCCGAG
CGGATATCACGGGTGCCGGGTTTTTAAACCTCCCCTTGTCACAATTTCCT
TCTTGGCGGGAAAAGATTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAA
GACGATCGTGCTGTGTCATCATGGAGGAAGGTCGATGCAAGTGGCTTCAT
TCCTGACGGGTCAGGCGGGATTTGAGAGTGTGTTTAATTTATCAGGGGGT
ATCAACATGTACTCGCAGTTGGTGGATGATAGCATTCCCATGTATTGA

Synonyms

Publications