jgi.p|Nanoce1779_2|595106, mRNA_6458 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595106
Unique NamemRNA_6458
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1410
Alignment locationscaffold_15:696023..698205 -

Link to JBrowse

Properties
Property NameValue
TranscriptId595192
TrackFilteredModels2
ProteinId595106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:696023..698205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595106gene_6458Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595106mRNA_6458-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6458CDS_6458Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6458 ID=mRNA_6458|Name=jgi.p|Nanoce1779_2|595106|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
ACAGGCAGCAGTCATGAATGACGGAGGGACTAATACCGTCAATGTGGTGG
CAATGCCCAATCTGCCGGACGGTATCGAGGCGCTTTGGCTCGTGGCGTTC
GCGGTGAGTGCCGCGCTCGTGACCGAAGCCCTGTCGTACTATTTCATCTA
CAGCAAGCCGGAGTACCAACGTGTCAAGAAGAACATGATCAAGACGGCTA
AGGCATTGGAACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAG
CAAGAGGATACCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTG
CCAACGGTTCGAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGA
TGCAAATGTTGACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTC
TATCTCTTGAACCGACGCTTTACCGGACACGTGGTAGCCAAGCTGCCTTT
CTCACCCTGGAAGTTGGTTATGAATCTCTCCCACCGTGGCCTCCCGGGCG
ACGACCCTACTGATTGCAGTATGACATTTCTTTTCTTGATGGTCAACATG
GGCCTCAAAGGTAGTTTGTCCAAGCTTTTGGGAAACGAGCAACCGCGCAT
TATGGCCGAAATAAACCAACAGCAAGTCGCAGAGACATGGGGAATCGAGG
ACCCGTCTGAGGGAGGGAAGGAGGAAGGGGGGGAAGGAGGGGTGGGGAAA
GCGGGGCGGACGAAGAATGGGAAGGAACGGAAGTCGGGGGGGAATCCGAA
GAAGAATCGATAGAGGAATGACGGACTGAGGGAGACAGGGAGGAAGAGCT
AATTAAGAAAAATGGAAAGGAGCAATGTGGCGCCAAACACTTTTGCTCTT
GCTTTGATGATTTCCTTCTTGATTTAATTCCTCATTCTCTTCTTCATTTT
GGCTTTCCTTGCAGTGCCAATAGCTGGGCTTAGGCTTTTGTGGTCGACCT
TACCGAACGGATAAGTCGCCTGCTGGCAGCGAGGGACACGACAAACAACA
GCCTAAGTAAGTACCCACCTACTACGACAATATTTACATTATATTAATAT
TATCTGCTTCTTGTGACTCAGTTTAACCTTCGCGTCATTGCATCCTGATG
ACGAGAACCCTATCATCACATCGTCATGTACCACGACCTCGGTCGTAGGG
CCGACTGTACGCTAAGCTAATCAATAAATTCACACGCCCGACTCGTTTAA
TGCGGATGACACGGAGGAGGGCATGAACTACGAGGCCAAAAAGGGTACAT
TCGCAGATACCCCCATGTTTCTCTTGACAGGTATCACCGACGAAATAGTG
CAAACAGTGTCTCGTTGGCGCGGGATGACCGGCAGCCAAAGCGGTTTGTC
TGCAGCGGGATGGCGTCATCGTCCCGCAAAAACGCCAGTGGCCTGATGCC
GGCAGCTACC
back to top

protein sequence of jgi.p|Nanoce1779_2|595106

>mRNA_6458-protein ID=mRNA_6458-protein|Name=jgi.p|Nanoce1779_2|595106|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MNDGGTNTVNVVAMPNLPDGIEALWLVAFAVSAALVTEALSYYFIYSKPE
YQRVKKNMIKTAKALERRRQELKKEKKEKQEDTAAIELSNKSDKKCQRFE
KDLKENARDMQKMQMLTTLLVGVSSAAVFYLLNRRFTGHVVAKLPFSPWK
LVMNLSHRGLPGDDPTDCSMTFLFLMVNMGLKGSLSKLLGNEQPRIMAEI
NQQQVAETWGIEDPSEGGKEEGGEGGVGKAGRTKNGKERKSGGNPKKNR*
back to top

mRNA from alignment at scaffold_15:696023..698205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6458 ID=mRNA_6458|Name=jgi.p|Nanoce1779_2|595106|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at scaffold_15:696023..698205- (Nannochloropsis oceanica)
ACAGGCAGCAGTCATGAATGACGGAGGGACTAATACCGTCAATGTGGTGG
CAATGCCCAATCTGCCGGACGGTATCGAGGCGCTTTGGCTCGTGGCGTTC
GCGGTGAGTGCCGCGCTCGTGACCGAAGGTGAGTAGACGAGACAGAAGGG
CGTATATATTACCAGGCACATACACACAAGGACGCGCAACGAAAGGAAGG
AAGGCGGGAGTGTGAAGTCAAGTGTTGCTTCTTTCCCTACCCTATCACCT
ACCCTACTAGCAGCAGTGATTCGCCTGCCTCATCCTCACTCTTTCCCTCC
TTCCTCCACCCCCCCGCTAGCCCTGTCGTACTATTTCATCTACAGCAAGC
CGGAGTACCAACGTGTCAAGAAGAACATGATCAAGACGGCTAAGGCATGT
ACGTATTTAAAAACAGGAGCTTTGGTCGGCAAGCGGGAATGTGAGGGGGA
GGGGAGGGAAGAAGGGGGGCACAGAGGAGTATCGTCGAGCGATGTGCCAT
TCGAGCGATGTGCCATCCTCTCTTCGTCACTCTCCCACCCCATCTCAATG
AAACTCTCCCGGCGAGACTTGAAAGAGAAATGGACGCACGACACAAGAAG
GAGACAAAGGGTCGGCACACATTCACTCTCCCCTCCCTCCCTCCCTCCCT
CCCTCTCCCCCTCCCTCCTCCCGCCAGTGGAACGCCGTCGCCAGGAACTG
AAAAAGGAAAAGAAAGAGAAGCAAGAGGATACCGCTGCCATTGAGCTCAG
TAACAAGAGCGACAAGAAGTGCCAACGGTTCGAAAAAGATCTGAAGGAGA
ACGCACGGGATATGCAAAAGATGCAAATGTTGACGACCCTGCTAGTCGGT
GTCAGCAGCGCCGCCGTATTCTATCTCTTGAACCGACGGTTCGTTTCGCC
CCTCTTCTCCACCTCTTTCTCCCTCTTTTCCTTCTTACCTGTGTCATAGA
GAAGGCATACGTCGTCGGAAAGGCCGCACATGGTAGAGTGGTGTCGCCCT
TTCTCACCCCTCCCTTCCCTCCCTTTCCTCCCCCCCTTCATCTGTATTTT
CCCTCCCCCCCTCCCTCCTTCCATCCATCTTTAGCTTTACCGGACACGTG
GTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCTCTCCCA
CCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGGTAAGCCCTT
TGTCCCTCCCGTCCTCCCTCCCTCCCTCCTGCTGGTGCTGCTCCCTCTGA
CTCCCTCCACCTCGATTTTCCTACCCCCCTCTCTCCTTGCTTCTAGACAT
TTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAAGCTT
TTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGCAAGT
CGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAGGAAG
GGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAAGGAA
CGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGAGGAATGACGGACT
GAGGGAGACAGGGAGGAAGAGCTAATTAAGAAAAATGGAAAGGAGCAATG
TGGCGCCAAACACTTTTGCTCTTGCTTTGATGATTTCCTTCTTGATTTAA
TTCCTCATTCTCTTCTTCATTTTGGCTTTCCTTGCAGTGCCAATAGCTGG
GCTTAGGCTTTTGTGGTCGACCTTACCGAACGGATAAGTCGCCTGCTGGC
AGCGAGGGACACGACAAACAACAGCCTAAGTAAGTACCCACCTACTACGA
CAATATTTACATTATATTAATATTATCTGCTTCTTGTGACTCAGTTTAAC
CTTCGCGTCATTGCATCCTGATGACGAGAACCCTATCATCACATCGTCAT
GTACCACGACCTCGGTCGTAGGGCCGACTGTACGCTAAGCTAATCAATAA
ATTCACACGCCCGACTCGTTTAATGCGGATGACACGGAGGAGGGCATGAA
CTACGAGGCCAAAAAGGGTACATTCGCAGATACCCCCATGTTTCTCTTGA
CAGGTATCACCGACGAAATAGTGCAAACAGTGTCTCGTTGGCGCGGGATG
ACCGGCAGCCAAAGCGGTTTGTCTGCAGCGGGATGGCGTCATCGTCCCGC
AAAAACGCCAGTGGCCTGATGCCGGCAGCTACC
back to top

Coding sequence (CDS) from alignment at scaffold_15:696023..698205-

>mRNA_6458 ID=mRNA_6458|Name=jgi.p|Nanoce1779_2|595106|organism=Nannochloropsis oceanica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_15:696023..698205- (Nannochloropsis oceanica)
ACATTTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAA
GCTTTTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGC
AAGTCGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAG
GAAGGGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAA
GGAACGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGCTTTACCGGA
CACGTGGTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCT
CTCCCACCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGTGGA
ACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAGCAAGAGGATA
CCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTGCCAACGGTTC
GAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGATGCAAATGTT
GACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTCTATCTCTTGA
ACCGACGCCCTGTCGTACTATTTCATCTACAGCAAGCCGGAGTACCAACG
TGTCAAGAAGAACATGATCAAGACGGCTAAGGCATATGAATGACGGAGGG
ACTAATACCGTCAATGTGGTGGCAATGCCCAATCTGCCGGACGGTATCGA
GGCGCTTTGGCTCGTGGCGTTCGCGGTGAGTGCCGCGCTCGTGACCGAAG
ACATTTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAA
GCTTTTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGC
AAGTCGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAG
GAAGGGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAA
GGAACGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGCTTTACCGGA
CACGTGGTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCT
CTCCCACCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGTGGA
ACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAGCAAGAGGATA
CCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTGCCAACGGTTC
GAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGATGCAAATGTT
GACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTCTATCTCTTGA
ACCGACGCCCTGTCGTACTATTTCATCTACAGCAAGCCGGAGTACCAACG
TGTCAAGAAGAACATGATCAAGACGGCTAAGGCATATGAATGACGGAGGG
ACTAATACCGTCAATGTGGTGGCAATGCCCAATCTGCCGGACGGTATCGA
GGCGCTTTGGCTCGTGGCGTTCGCGGTGAGTGCCGCGCTCGTGACCGAAG
ACATTTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAA
GCTTTTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGC
AAGTCGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAG
GAAGGGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAA
GGAACGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGCTTTACCGGA
CACGTGGTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCT
CTCCCACCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGTGGA
ACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAGCAAGAGGATA
CCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTGCCAACGGTTC
GAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGATGCAAATGTT
GACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTCTATCTCTTGA
ACCGACGCCCTGTCGTACTATTTCATCTACAGCAAGCCGGAGTACCAACG
TGTCAAGAAGAACATGATCAAGACGGCTAAGGCATATGAATGACGGAGGG
ACTAATACCGTCAATGTGGTGGCAATGCCCAATCTGCCGGACGGTATCGA
GGCGCTTTGGCTCGTGGCGTTCGCGGTGAGTGCCGCGCTCGTGACCGAAG
ACATTTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAA
GCTTTTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGC
AAGTCGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAG
GAAGGGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAA
GGAACGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGCTTTACCGGA
CACGTGGTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCT
CTCCCACCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGTGGA
ACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAGCAAGAGGATA
CCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTGCCAACGGTTC
GAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGATGCAAATGTT
GACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTCTATCTCTTGA
ACCGACGCCCTGTCGTACTATTTCATCTACAGCAAGCCGGAGTACCAACG
TGTCAAGAAGAACATGATCAAGACGGCTAAGGCATATGAATGACGGAGGG
ACTAATACCGTCAATGTGGTGGCAATGCCCAATCTGCCGGACGGTATCGA
GGCGCTTTGGCTCGTGGCGTTCGCGGTGAGTGCCGCGCTCGTGACCGAAG
ACATTTCTTTTCTTGATGGTCAACATGGGCCTCAAAGGTAGTTTGTCCAA
GCTTTTGGGAAACGAGCAACCGCGCATTATGGCCGAAATAAACCAACAGC
AAGTCGCAGAGACATGGGGAATCGAGGACCCGTCTGAGGGAGGGAAGGAG
GAAGGGGGGGAAGGAGGGGTGGGGAAAGCGGGGCGGACGAAGAATGGGAA
GGAACGGAAGTCGGGGGGGAATCCGAAGAAGAATCGATAGCTTTACCGGA
CACGTGGTAGCCAAGCTGCCTTTCTCACCCTGGAAGTTGGTTATGAATCT
CTCCCACCGTGGCCTCCCGGGCGACGACCCTACTGATTGCAGTATGTGGA
ACGCCGTCGCCAGGAACTGAAAAAGGAAAAGAAAGAGAAGCAAGAGGATA
CCGCTGCCATTGAGCTCAGTAACAAGAGCGACAAGAAGTGCCAACGGTTC
GAAAAAGATCTGAAGGAGAACGCACGGGATATGCAAAAGATGCAAATGTT
GACGACCCTGCTAGTCGGTGTCAGCAGCGCCGCCGTATTCTATCTCTTGA
ACCGACGCCCTGTCGTACTATTTCATCTACAGCAAGCCGGAGTACCAACG
TGTCAAGAAGAACATGATCAAGACGGCTAAGGCATATGAATGACGGAGGG
ACTAATACCGTCAATGTGGTGGCAATGCCCAATCTGCCGGACGGTATCGA
GGCGCTTTGGCTCGTGGCGTTCGCGGTGAGTGCCGCGCTCGTGACCGAAG
back to top
Synonyms
Publications