jgi.p|Nanoce1779_2|595096, mRNA_6456 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595096
Unique NamemRNA_6456
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1165
Alignment locationscaffold_15:687726..689466 -

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Properties
Property NameValue
TranscriptId595182
TrackFilteredModels2
ProteinId595096
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:687726..689466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595096gene_6456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595096mRNA_6456-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6456CDS_6456Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6456 ID=mRNA_6456|Name=jgi.p|Nanoce1779_2|595096|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTTCTCTTTCTCAACC
TCCTCCTCCTCCTTCTCCTCTCCCTCCTTCATCTCCTCCTCTTTCTCCTC
CTATTAACCTGCTTCCCTCCTTTGCGTGCCTTGCATCCTTTTCCTCCCTT
TTCTTTTTCTCGCCCGCCTTGTGCGCTTGTCAACTCCTTCCTCCCTACCT
TGTCTGAGCCTTCTATTCCACCCTTCCTTTCCTCTTTCCTCCCTCTCCGC
ACTTCAATCAACACCGCCTGCCCCCGGCTGCCCGATTGATCATTCATATT
AACAGGGAGCGGTGGACTCCCATGAAGTAGTCAACCTGCTTCTCGCGTTT
CTGGCCCAAGAGGGAGAAGGAAGGAAGACCGAAGAATTGATATACGAGAC
AAAGGAGCTTAGACAACTCGTCCGGGACATGCTTTTCCGTCTGCGGCGGA
TGGATCTACTCGTGCTGCAGCTGCTCCAGGAGGGTCGGCTGGTCGAAGCC
TTAAGGACCCTTCGGACCATGTCACAAGAAGTCAAGAGCAGGAGTACAAT
GGCATCACCTTTTCCTTTACTCGCGGAGGGACCTCTAATACAGGCCCTGG
TCAACGCCACCAATATCCGTCTACGCGAACTCTCCTCGTCCCCTACCTCC
GCCGTTTCATCCACTCCATCCTTCCCTCCCTCCTCCATGCCCACGGCTGC
CGCCTCGCATCGCGCCGCCATTTGCTACCTCCTGCACGAGTGGCTCCGGT
CTCTTCAGCCGAAGCTATTTCCCATTCCACAGGCCGCGTCCGACTCGACG
AATGAGGAAAGGAATGAGGGCGAGGGGGAGGAGAAGAAGGAACGTTTCGT
GGACGTTATCCCTGCTTTCCCCTTTGACACCTCTCACTTCTCGCCTCCGT
CCGTGGCTAGCACGCTGGCAGAGCAGATTTATGGGTATGCCCGTAGTAGC
AACGAAGAAGATGGATAATGCTGTGTGCTAGAGGGAGTCAGTCCACAGGG
GTAATATTTATCTCACATTAAAAATGTTGGGTGGATCTCGCACAAGAAGA
TTGGATGACTGGGCGATAATTGGGGAAGTGTCCCGCATAACAATCAAATC
AACAAGACCAAGGGAAAAGGGTTGAGATGAAAGAAAAAGAAGAAGAAACT
TGTTGTTGACTTAAA
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protein sequence of jgi.p|Nanoce1779_2|595096

>mRNA_6456-protein ID=mRNA_6456-protein|Name=jgi.p|Nanoce1779_2|595096|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MLFRLRRMDLLVLQLLQEGRLVEALRTLRTMSQEVKSRSTMASPFPLLAE
GPLIQALVNATNIRLRELSSSPTSAVSSTPSFPPSSMPTAAASHRAAICY
LLHEWLRSLQPKLFPIPQAASDSTNEERNEGEGEEKKERFVDVIPAFPFD
TSHFSPPSVASTLAEQIYGYARSSNEEDG*
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mRNA from alignment at scaffold_15:687726..689466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6456 ID=mRNA_6456|Name=jgi.p|Nanoce1779_2|595096|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp|location=Sequence derived from alignment at scaffold_15:687726..689466- (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTTCTCTTTCTCAACC
TCCTCCTCCTCCTTCTCCTCTCCCTCCTTCATCTCCTCCTCTTTCTCCTC
CTATTAACCTGCTTCCCTCCTTTGCGTGCCTTGCATCCTTTTCCTCCCTT
TTCTTTTTCTCGCCCGCCTTGTGCGCTTGTCAACTCCTTCCTCCCTACCT
TGTCTGAGCCTTCTATTCCACCCTTCCTTTCCTCTTTCCTCCCTCTCCGC
ACTTCAATCAACACCGCCTGCCCCCGGCTGCCCGATTGATCATTCATATT
AACAGGGAGCGGTGGACTCCCATGAAGTAGTCAACCTGCTTCTCGCGTTT
CTGGCCCAAGAGGGAGAAGGAAGGAAGACCGAAGAATTGATATACGAGAC
AAAGGAGCTTAGACAACTCGTCCGGGACATGCTTTTCCGTCTGCGGCGGA
TGGATCTACTCGTGCTGCAGCTGCTCCAGGTACGGTCTGCCTGCATTTTC
CAACCTCCCCTCCCCGCTTCTTTTCCCTGTTCTCTTTTCCCTTGTCCGAC
AGCTACTCGTAGTAATTGTTTCATTTAACCAAACACTGTTATTCGTCGTG
GCTTACATAACCCCCTCCCTCCCCGCCCTCTCCAGGAGGGTCGGCTGGTC
GAAGCCTTAAGGACCCTTCGGACCATGTCACAAGAAGTCAAGAGCAGGAG
TACAATGGCATCACCTTTTCCTTTACTCGCGGAGGTATGTCTATTTTTAT
ATAATAAAATATGCAGCATATATACGCCCTCGTCGAAATTTCCTGCCCCT
CTTTGTCTTCCCCTCTGTGCCGGTCGTTCCCCTCGCGCATTTTTTTGGGG
CCTAATTCTTGTGTCTGGGATATCTCACGCAGTTGCTTCTACCTTCACCT
ATTCTCCTCTCCCAGGGACCTCTAATACAGGCCCTGGTCAACGCCACCAA
TATCCGTCTACGCGAACTCTCCTCGTCCCCTACCTCCGCCGTTTCATCCA
CTCCATCCTTCCCTCCCTCCTCCATGCCCACGGCTGCCGCCTCGCATCGC
GCCGCCATTTGCTACCTCCTGCACGAGTGGCTCCGGTAAGCGCCAATTTC
GTAAAAAAATCGATCTCGCGCACAAAAATTATCAGAGGAGGAGCTACGAA
AATATATACAGAGAGAATATAGACATCTTCTTCTTTCCCTTCGTCTTTCC
TCCTTCCTTCGTGACCTCATATCGTGGCGGCCTTCGTCCTCATCGTTATT
TCCCGCTCTTAATTTTTATTTATTTATTCTTACTTCCTCTCCCCCTCCCT
CCTTCCCTCCCTCCTTTCCTCCAGGTCTCTTCAGCCGAAGCTATTTCCCA
TTCCACAGGCCGCGTCCGACTCGACGAATGAGGAAAGGAATGAGGGCGAG
GGGGAGGAGAAGAAGGAACGTTTCGTGGACGTTATCCCTGCTTTCCCCTT
TGACACCTCTCACTTCTCGCCTCCGTCCGTGGCTAGCACGCTGGCAGAGC
AGATTTATGGGTATGCCCGTAGTAGCAACGAAGAAGATGGATAATGCTGT
GTGCTAGAGGGAGTCAGTCCACAGGGGTAATATTTATCTCACATTAAAAA
TGTTGGGTGGATCTCGCACAAGAAGATTGGATGACTGGGCGATAATTGGG
GAAGTGTCCCGCATAACAATCAAATCAACAAGACCAAGGGAAAAGGGTTG
AGATGAAAGAAAAAGAAGAAGAAACTTGTTGTTGACTTAAA
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Coding sequence (CDS) from alignment at scaffold_15:687726..689466-

>mRNA_6456 ID=mRNA_6456|Name=jgi.p|Nanoce1779_2|595096|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_15:687726..689466- (Nannochloropsis oceanica)
GTCTCTTCAGCCGAAGCTATTTCCCATTCCACAGGCCGCGTCCGACTCGA
CGAATGAGGAAAGGAATGAGGGCGAGGGGGAGGAGAAGAAGGAACGTTTC
GTGGACGTTATCCCTGCTTTCCCCTTTGACACCTCTCACTTCTCGCCTCC
GTCCGTGGCTAGCACGCTGGCAGAGCAGATTTATGGGTATGCCCGTAGTA
GCAACGAAGAAGATGGATAAGGACCTCTAATACAGGCCCTGGTCAACGCC
ACCAATATCCGTCTACGCGAACTCTCCTCGTCCCCTACCTCCGCCGTTTC
ATCCACTCCATCCTTCCCTCCCTCCTCCATGCCCACGGCTGCCGCCTCGC
ATCGCGCCGCCATTTGCTACCTCCTGCACGAGTGGCTCCGGAGGGTCGGC
TGGTCGAAGCCTTAAGGACCCTTCGGACCATGTCACAAGAAGTCAAGAGC
AGGAGTACAATGGCATCACCTTTTCCTTTACTCGCGGAGATGCTTTTCCG
TCTGCGGCGGATGGATCTACTCGTGCTGCAGCTGCTCCAGGTCTCTTCAG
CCGAAGCTATTTCCCATTCCACAGGCCGCGTCCGACTCGACGAATGAGGA
AAGGAATGAGGGCGAGGGGGAGGAGAAGAAGGAACGTTTCGTGGACGTTA
TCCCTGCTTTCCCCTTTGACACCTCTCACTTCTCGCCTCCGTCCGTGGCT
AGCACGCTGGCAGAGCAGATTTATGGGTATGCCCGTAGTAGCAACGAAGA
AGATGGATAAGGACCTCTAATACAGGCCCTGGTCAACGCCACCAATATCC
GTCTACGCGAACTCTCCTCGTCCCCTACCTCCGCCGTTTCATCCACTCCA
TCCTTCCCTCCCTCCTCCATGCCCACGGCTGCCGCCTCGCATCGCGCCGC
CATTTGCTACCTCCTGCACGAGTGGCTCCGGAGGGTCGGCTGGTCGAAGC
CTTAAGGACCCTTCGGACCATGTCACAAGAAGTCAAGAGCAGGAGTACAA
TGGCATCACCTTTTCCTTTACTCGCGGAGATGCTTTTCCGTCTGCGGCGG
ATGGATCTACTCGTGCTGCAGCTGCTCCAGGTCTCTTCAGCCGAAGCTAT
TTCCCATTCCACAGGCCGCGTCCGACTCGACGAATGAGGAAAGGAATGAG
GGCGAGGGGGAGGAGAAGAAGGAACGTTTCGTGGACGTTATCCCTGCTTT
CCCCTTTGACACCTCTCACTTCTCGCCTCCGTCCGTGGCTAGCACGCTGG
CAGAGCAGATTTATGGGTATGCCCGTAGTAGCAACGAAGAAGATGGATAA
GGACCTCTAATACAGGCCCTGGTCAACGCCACCAATATCCGTCTACGCGA
ACTCTCCTCGTCCCCTACCTCCGCCGTTTCATCCACTCCATCCTTCCCTC
CCTCCTCCATGCCCACGGCTGCCGCCTCGCATCGCGCCGCCATTTGCTAC
CTCCTGCACGAGTGGCTCCGGAGGGTCGGCTGGTCGAAGCCTTAAGGACC
CTTCGGACCATGTCACAAGAAGTCAAGAGCAGGAGTACAATGGCATCACC
TTTTCCTTTACTCGCGGAGATGCTTTTCCGTCTGCGGCGGATGGATCTAC
TCGTGCTGCAGCTGCTCCAGGTCTCTTCAGCCGAAGCTATTTCCCATTCC
ACAGGCCGCGTCCGACTCGACGAATGAGGAAAGGAATGAGGGCGAGGGGG
AGGAGAAGAAGGAACGTTTCGTGGACGTTATCCCTGCTTTCCCCTTTGAC
ACCTCTCACTTCTCGCCTCCGTCCGTGGCTAGCACGCTGGCAGAGCAGAT
TTATGGGTATGCCCGTAGTAGCAACGAAGAAGATGGATAAGGACCTCTAA
TACAGGCCCTGGTCAACGCCACCAATATCCGTCTACGCGAACTCTCCTCG
TCCCCTACCTCCGCCGTTTCATCCACTCCATCCTTCCCTCCCTCCTCCAT
GCCCACGGCTGCCGCCTCGCATCGCGCCGCCATTTGCTACCTCCTGCACG
AGTGGCTCCGGAGGGTCGGCTGGTCGAAGCCTTAAGGACCCTTCGGACCA
TGTCACAAGAAGTCAAGAGCAGGAGTACAATGGCATCACCTTTTCCTTTA
CTCGCGGAGATGCTTTTCCGTCTGCGGCGGATGGATCTACTCGTGCTGCA
GCTGCTCCAG
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Synonyms
Publications