jgi.p|Nanoce1779_2|595094, mRNA_6455 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595094
Unique NamemRNA_6455
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length659
Alignment locationscaffold_15:686967..687725 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595180
TrackFilteredModels2
ProteinId595094
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:686967..687725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595094gene_6455Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595094mRNA_6455-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6455CDS_6455Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6455 ID=mRNA_6455|Name=jgi.p|Nanoce1779_2|595094|organism=Nannochloropsis oceanica|type=mRNA|length=659bp
AGCTCCCTGTAACAGACGTCTAGACGGCGGGGCAGCACGATGATCCGGGC
GCTAGCGCTCCATGAAATTCTGGCGGGACGCCTAGGCGGAAACATTAGGG
CCGCCCAAGTGTACAATCACGACGGAGCCTTGCTCGGTGCCGCTGCCCTC
CCTTCCCCCCCTCCCCCTGGTGCGCCCCTCCCTTCCTCTGTCGATGCTTG
CGGCCCACCCTCCCGCGCCGCCGTGCTTGAAGCACAAACTACAGCGGCCA
TTACCTCCCACATATGGAGCACATATGAAGGGGTCGGTCATTTGACCGCT
GAGCAACCAGACGAAGGAGGAGGAAGGGGAGGAGGGCGAGAGGGAAGGCG
GGAAGGTAGGGTCCTCGAGACGCTGATCCTGGAGCTAGAGCACGCCCGGT
TGGTGGTAGTGCCGGCAGGGCCAAGGTATTTGGTGTGTTTGATCGGTTCA
GAAAAAGCGGAGGTAGGTATGTTGATGGCCAAGGCGCAGGCATTGGGCTC
TTTTTTGAGGGAGGAATTAGGTCAGGTCCAGGTGGAGGGGTAAGGATGGG
GACAAAGAGGGGGGGAAGGAGGGAAGGAGGAAGAAGAGGGAAAGGATGTA
CATAGAAAGGATACGGTGTTTGACAGCTGGAAATAAATGAACGAATAGTA
AATAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|595094

>mRNA_6455-protein ID=mRNA_6455-protein|Name=jgi.p|Nanoce1779_2|595094|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MIRALALHEILAGRLGGNIRAAQVYNHDGALLGAAALPSPPPPGAPLPSS
VDACGPPSRAAVLEAQTTAAITSHIWSTYEGVGHLTAEQPDEGGGRGGGR
EGRREGRVLETLILELEHARLVVVPAGPRYLVCLIGSEKAEVGMLMAKAQ
ALGSFLREELGQVQVEG*
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mRNA from alignment at scaffold_15:686967..687725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6455 ID=mRNA_6455|Name=jgi.p|Nanoce1779_2|595094|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at scaffold_15:686967..687725+ (Nannochloropsis oceanica)
AGCTCCCTGTAACAGACGTCTAGACGGCGGGGCAGCACGATGATCCGGGC
GCTAGCGGTACGTCGCTTTCTCCTCCTCTCCATTTCCTATGATTTTGATC
ATCACAACAGATACACATGCCTTATCCACACCTTTTTCGTCCTCCTTTAC
GCCCCAGCTCCATGAAATTCTGGCGGGACGCCTAGGCGGAAACATTAGGG
CCGCCCAAGTGTACAATCACGACGGAGCCTTGCTCGGTGCCGCTGCCCTC
CCTTCCCCCCCTCCCCCTGGTGCGCCCCTCCCTTCCTCTGTCGATGCTTG
CGGCCCACCCTCCCGCGCCGCCGTGCTTGAAGCACAAACTACAGCGGCCA
TTACCTCCCACATATGGAGCACATATGAAGGGGTCGGTCATTTGACCGCT
GAGCAACCAGACGAAGGAGGAGGAAGGGGAGGAGGGCGAGAGGGAAGGCG
GGAAGGTAGGGTCCTCGAGACGCTGATCCTGGAGCTAGAGCACGCCCGGT
TGGTGGTAGTGCCGGCAGGGCCAAGGTATTTGGTGTGTTTGATCGGTTCA
GAAAAAGCGGAGGTAGGTATGTTGATGGCCAAGGCGCAGGCATTGGGCTC
TTTTTTGAGGGAGGAATTAGGTCAGGTCCAGGTGGAGGGGTAAGGATGGG
GACAAAGAGGGGGGGAAGGAGGGAAGGAGGAAGAAGAGGGAAAGGATGTA
CATAGAAAGGATACGGTGTTTGACAGCTGGAAATAAATGAACGAATAGTA
AATAGGGAG
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Coding sequence (CDS) from alignment at scaffold_15:686967..687725+

>mRNA_6455 ID=mRNA_6455|Name=jgi.p|Nanoce1779_2|595094|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_15:686967..687725+ (Nannochloropsis oceanica)
ATGATCCGGGCGCTAGCGCTCCATGAAATTCTGGCGGGACGCCTAGGCGG
AAACATTAGGGCCGCCCAAGTGTACAATCACGACGGAGCCTTGCTCGGTG
CCGCTGCCCTCCCTTCCCCCCCTCCCCCTGGTGCGCCCCTCCCTTCCTCT
GTCGATGCTTGCGGCCCACCCTCCCGCGCCGCCGTGCTTGAAGCACAAAC
TACAGCGGCCATTACCTCCCACATATGGAGCACATATGAAGGGGTCGGTC
ATTTGACCGCTGAGCAACCAGACGAAGGAGGAGGAAGGGGAGGAGGGCGA
GAGGGAAGGCGGGAAGGTAGGGTCCTCGAGACGCTGATCCTGGAGCTAGA
GCACGCCCGGTTGGTGGTAGTGCCGGCAGGGCCAAGGTATTTGGTGTGTT
TGATCGGTTCAGAAAAAGCGGAGGTAGGTATGTTGATGGCCAAGGCGCAG
GCATTGGGCTCTTTTTTGAGGGAGGAATTAGGTCAGGTCCAGGTGGAGGG
GTAAATGATCCGGGCGCTAGCGCTCCATGAAATTCTGGCGGGACGCCTAG
GCGGAAACATTAGGGCCGCCCAAGTGTACAATCACGACGGAGCCTTGCTC
GGTGCCGCTGCCCTCCCTTCCCCCCCTCCCCCTGGTGCGCCCCTCCCTTC
CTCTGTCGATGCTTGCGGCCCACCCTCCCGCGCCGCCGTGCTTGAAGCAC
AAACTACAGCGGCCATTACCTCCCACATATGGAGCACATATGAAGGGGTC
GGTCATTTGACCGCTGAGCAACCAGACGAAGGAGGAGGAAGGGGAGGAGG
GCGAGAGGGAAGGCGGGAAGGTAGGGTCCTCGAGACGCTGATCCTGGAGC
TAGAGCACGCCCGGTTGGTGGTAGTGCCGGCAGGGCCAAGGTATTTGGTG
TGTTTGATCGGTTCAGAAAAAGCGGAGGTAGGTATGTTGATGGCCAAGGC
GCAGGCATTGGGCTCTTTTTTGAGGGAGGAATTAGGTCAGGTCCAGGTGG
AGGGGTAA
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Synonyms
Publications