jgi.p|Nanoce1779_2|595083, mRNA_6453 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595083
Unique Name	mRNA_6453
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1728
Alignment location	scaffold_15:682152..684416 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595169
Track	FilteredModels2
ProteinId	595083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:682152..684416 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595083	gene_6453	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595083	mRNA_6453-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6453	CDS_6453	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:682152..684416+
coding sequence from alignment at scaffold_15:682152..684416+

mRNA sequence

>mRNA_6453 ID=mRNA_6453|Name=jgi.p|Nanoce1779_2|595083|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ACAGAAAAGTAAAACACCTCCCCCTCCATCACGCAAGCGTCATGGCATAT
AAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCAGGGCCACAT
TTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACAAGATCGTGG
AGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTTGGCATTGCA
ACAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGCGGATGCGAC
CTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCAAGGCCAAGC
ACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAGCTGGTCTCA
GTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAGCTCTCTCAA
GACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGGAGGCAGGGG
GGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTGGACGGGGTA
TACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTTCTCCAACGC
AGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAGGAGAGGACT
TGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTGGTGAAGCTG
GCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAAGGCCCAAGG
GACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGGTGAACAAGG
AGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTCTACTTCGGC
TGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACAGGCAGATTT
TACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTGTGATCAAGG
CCGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGACCCTTCCATC
ACCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGAAGCCCATGG
AGCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACACTCCGATTA
GCGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTTATGTCGCAT
TTGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGTGGCGGGTGT
GTGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAGCCGCATACT
GCCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCGGAGGAGAAG
GCGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAAGTTAAGGGAATAGG
TTTGCGTGTTTTTTTTTGTTGAAGGGAGGAGGCTGGGAGATGGAAAGAGA
TGGATCAGTGAGAGATGAGAGATAGTAAGGAGTGTGGTCAGGAGAAGAGA
CAATGGGAATTTGAGAGGGGAAAGGAACGTGGTGACAGATGAGGGATGGA
GGGAGGGGGAGGGAAGGAGGAGGTGAGCCCTTGAGCTCGGTCATTACCTT
GAAAGGGTTTAAGAGGAGTAAGTGGAGACGGAGGGGAAAAGATCAATGGG
AAGAGAAGAGTGTATAGAGATTTCCTGTGTTACGCACGCCACCGACAAGG
ATGACAGCGATGTTCGTAGTAGTACAGACCATGTCACGGGAAAAGTAAGA
GGACAATTTTTAGAAGAACTACCACCTGCATGGGTCGCAAAGCTAGTGAT
ACAGCAGTGACTTCTATCTTATTCTGGT

protein sequence of jgi.p|Nanoce1779_2|595083

>mRNA_6453-protein ID=mRNA_6453-protein|Name=jgi.p|Nanoce1779_2|595083|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAF
GIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGE
LVSVYEWGYGPCDAFMSSLKTQATTFQAGTTPKEAGGSTVKAAFSLSEPL
DGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAV
VKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGF
YFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVTPQDLAGDILAD
PSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADL
MSHLMEDPSTIWKSGPVAGVCIAALVVLFSCMAAAYCLGKRKAALMVKKA
EEKAERKQQGNALV*

mRNA from alignment at scaffold_15:682152..684416+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6453 ID=mRNA_6453|Name=jgi.p|Nanoce1779_2|595083|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at scaffold_15:682152..684416+ (Nannochloropsis oceanica)
ACAGAAAAGTAAAACACCTCCCCCTCCATCACGCAAGCGTCATGGCATAT
AAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCAGGGCCACAT
TTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACAAGATCGTGG
AGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTTGGCATTGCA
ACAGGCAATGTAAGTACTAAACAAATATAATACAAGGGCACTAGCCTTCT
TTTCATATGTGAGTTATGATGGCAACGCGGTCAAAGGGGGAAGTGCGGGC
GGAGAGAGGCAAACGGGAAGGAGGGAGGGCTGCCATATCATACTTTTTGG
GGGGAAATGGGGGGAAGGCGAGGAGCGGGAAAGGGGAGGGAGGCGAATGG
GAACAAAGGCCACCAATGTTGTGCAGCACGATAAGTGATGCTTTCTTTCA
TTTCCATCAGGGGCTCGCATGTGTGTTCTTTCCTGAGAAGCGAATTACGT
ACCGAAGGAGGGCAGGCATGATTCCCCCTCGCTCTTCCGCCTTATGTAAC
CTAGATTTACCCGCATTCTCCCTCCCTCCTTCCCTCCCTCCTACCTTCCT
TCCTTCAAGTACGATGCTGCAACCACCGTGGATTTCAAAGCGGATGCGAC
CTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCAAGGCCAAGC
ACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAGCTGGTCTCA
GTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAGCTCTCTCAA
GACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGGAGGCAGGGG
GGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTGGACGGGGTA
TACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTTCTCCAACGC
AGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAGGAGAGGACT
TGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTGGTGAAGCTG
GCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAAGGCCCAAGG
GACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGGTGAACAAGG
AGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTCTACTTCGGC
TGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACAGGCAGATTT
TACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGGTAAGCAAGCT
TTCCTTTCCTCCCTCCCCTCCTCCCTTCCCTCCTTTCCTTCATTTCCCTG
TTGGTGTCTAGTTGACCTTACTCTTTACAACGCTTTCCCCTCCCCCTGTC
CCCCTCCTATCCCCCTTCTTCCTCAGTGTGATCAAGGCCGTTACCCCCCA
GGATCTGGCGGGTGATATCCTTGCAGACCCTTCCATCACCCTCTTCCAGG
GCGATGCTGACTACACGTTTGAGGCGGAAGCCCATGGAGCGGATAGTATA
TTCGTTGTTATCCCCAATAGGCTGGACACTCCGATTAGCGTAGAGGATCT
TTCTGTCTCTTACGAGGCTGCTGACCTTATGTCGCATTTGATGGAGGACC
CGAGCACCATTTGGAAGAGTGGCCCGGTGGCGGGTGTGTGCATTGCGGCG
CTTGTCGTGTTATTCTCCTGCATGGCAGCCGCATACTGCCTGGGCAAGCG
CAAGGCGGCACTGATGGTGAAGAAAGCGGAGGAGAAGGCGGAGAGGAAGC
AGCAGGGCAATGCCCTGGTTTAAGTTAAGGGAATAGGTTTGCGTGTTTTT
TTTTGTTGAAGGGAGGAGGCTGGGAGATGGAAAGAGATGGATCAGTGAGA
GATGAGAGATAGTAAGGAGTGTGGTCAGGAGAAGAGACAATGGGAATTTG
AGAGGGGAAAGGAACGTGGTGACAGATGAGGGATGGAGGGAGGGGGAGGG
AAGGAGGAGGTGAGCCCTTGAGCTCGGTCATTACCTTGAAAGGGTTTAAG
AGGAGTAAGTGGAGACGGAGGGGAAAAGATCAATGGGAAGAGAAGAGTGT
ATAGAGATTTCCTGTGTTACGCACGCCACCGACAAGGATGACAGCGATGT
TCGTAGTAGTACAGACCATGTCACGGGAAAAGTAAGAGGACAATTTTTAG
AAGAACTACCACCTGCATGGGTCGCAAAGCTAGTGATACAGCAGTGACTT
CTATCTTATTCTGGT

Coding sequence (CDS) from alignment at scaffold_15:682152..684416+

>mRNA_6453 ID=mRNA_6453|Name=jgi.p|Nanoce1779_2|595083|organism=Nannochloropsis oceanica|type=CDS|length=3735bp|location=Sequence derived from alignment at scaffold_15:682152..684416+ (Nannochloropsis oceanica)
ATGGCATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCA
GGGCCACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACA
AGATCGTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTT
GGCATTGCAACAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGC
GGATGCGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCA
AGGCCAAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAG
CTGGTCTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAG
CTCTCTCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGG
AGGCAGGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTG
GACGGGGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTT
CTCCAACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAG
GAGAGGACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTG
GTGAAGCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAA
GGCCCAAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGG
TGAACAAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTC
TACTTCGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACA
GGCAGATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTG
TGATCAAGGCCGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGAC
CCTTCCATCACCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGA
AGCCCATGGAGCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACA
CTCCGATTAGCGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTT
ATGTCGCATTTGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGT
GGCGGGTGTGTGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAG
CCGCATACTGCCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCG
GAGGAGAAGGCGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAAATGGC
ATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCAGGGCC
ACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACAAGATC
GTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTTGGCAT
TGCAACAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGCGGATG
CGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCAAGGCC
AAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAGCTGGT
CTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAGCTCTC
TCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGGAGGCA
GGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTGGACGG
GGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTTCTCCA
ACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAGGAGAG
GACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTGGTGAA
GCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAAGGCCC
AAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGGTGAAC
AAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTCTACTT
CGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACAGGCAG
ATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTGTGATC
AAGGCCGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGACCCTTC
CATCACCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGAAGCCC
ATGGAGCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACACTCCG
ATTAGCGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTTATGTC
GCATTTGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGTGGCGG
GTGTGTGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAGCCGCA
TACTGCCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCGGAGGA
GAAGGCGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAAATGGCATATA
AGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCAGGGCCACATT
TTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACAAGATCGTGGA
GATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTTGGCATTGCAA
CAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGCGGATGCGACC
TTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCAAGGCCAAGCA
CGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAGCTGGTCTCAG
TCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAGCTCTCTCAAG
ACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGGAGGCAGGGGG
GTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTGGACGGGGTAT
ACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTTCTCCAACGCA
GAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAGGAGAGGACTT
GGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTGGTGAAGCTGG
CCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAAGGCCCAAGGG
ACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGGTGAACAAGGA
GCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTCTACTTCGGCT
GGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACAGGCAGATTTT
ACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTGTGATCAAGGC
CGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGACCCTTCCATCA
CCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGAAGCCCATGGA
GCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACACTCCGATTAG
CGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTTATGTCGCATT
TGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGTGGCGGGTGTG
TGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAGCCGCATACTG
CCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCGGAGGAGAAGG
CGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAA

Synonyms

Publications