jgi.p|Nanoce1779_2|595080, mRNA_6452 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595080
Unique Name	mRNA_6452
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2445
Alignment location	scaffold_15:679351..681795 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595166
Track	FilteredModels2
ProteinId	595080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:679351..681795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595080	gene_6452	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595080	mRNA_6452-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6452	CDS_6452	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:679351..681795+
coding sequence from alignment at scaffold_15:679351..681795+

mRNA sequence

>mRNA_6452 ID=mRNA_6452|Name=jgi.p|Nanoce1779_2|595080|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp
GTTCATTTGATTTCTTTTCTTTTTTTAACGCCGTGAGACTGGGCTGGGCC
TTCGTAAATTTCTGGCCCAGCTGCTCCGAAAGTCATGCAATGGGAAACGA
TGTGCCAATATGAGCAACCATCGTCTTAATGTGGAAAAGGATTTCATGTT
GTGTCTTAAAAACATACAAAGGCAAATATGATGTCAAGGTGTGGCCGCAC
ACCATAACCTCCTCCCTATCCTCTTGTCCACGCCATCGCCCGCACCAAAC
TATAAAGGATCCTACGAGTGACCATAATACAATTTCAACTTTGACGGTAC
CCTCCTACTTGCACTTAGCAGTGTAGACGCCGTTATTTGCCTATTTTAAT
CGTCAAGCAGACAGGCTGCACAATAATATGCTCGATGAAAAAGAAAACAA
ACATGGGCCTAGTTGTTTGAGTCTGAGGTTTGGCCTTCATGAATAAAAAC
TAAGCCACATCATCAAGAATGCCCCTCGATTCTCACAGCAGGACCCGGTA
AGCGCTGCTCATTACGCCATGCGCCCCTCTTTCTATAAGCCTCGGCAGTG
CCCACCTCGTAATCAATTTCGATGCATCATCTGCATGAAAAAAATGGTTC
TGGTCGCCCTGAGTTAGTCCGCGACTAACTATTTCAGGGCAATCAGCACA
TCTGTGACTTGACTATTTCTGGGCAACCAGCACATCTGTGACTTGATTCA
TATATCTACCACCTACAAACCCTCCGATAGGCCCGGAATGGGTAAATACG
TGATAGAAGGCAAGGTAGGCGAAGGCACTTTCAGCGACGTTCTCCGGGTA
CAGCATACCTGTGATGGAACCTTTCACGCCATGAAATGCTTAAAAAGCAA
GATTGCCTCCGTCAGTCAAGTGAAGAATTTACGGGAAGTTCAAGCGTTGA
GGCGGCTGACTCCTCATCCCCACATAGTCGCCTGGCAAGACATCATTTTC
GAGGAGGCCACCGGCCGCCTCGCCCTCGTTTTTGAGCTCCTTGACGCCAA
TCTCTACGAGCTCATTCGCGGCCGCCGCTTCCCCCTCGCGGCCGATGCTG
TCCGTACATACACCCATCAGCTACTGCAAGCCTTGCAGTACATGCACGCA
CGGGGCATCTTCCACCGCGACATTAAGCCTGAAAATGTGTTGGTGGAAAA
AAGGACGCAAACAATTAAGCTCGCCGATTTTGGTTCTTGCCGCGGGATTC
ATTCCTCGCCTCCGTACACTGAGTACATTTCTACACGCTGGTACCGATCC
CCGGAATGTCTCTTGTCCAATGGGAGGTATGGGCCTCCGATGGACATGTG
GGGAGTGGGCTGTGTAATGTTTGAAATGAGCACGCTGCGGCCTTTGTTTT
GCGGGGACGATGACATTGACCAATTGAATCGCATTCACAAAGTGTTGGGT
ACGCCACCCACTGAGTTGCTGCAGGCGATGCGTCATAGGGGACAGAAAGG
AGGGGACCAGGCGGAGGGGGAGGATTGGACGGGAGGGAGGAAGGATACGT
ATATGGAGAAAGAGCACCGCTTGCTGGTCTTCCTGCCGACGCAGCGAGGG
ACGGGGTTGGATACCTTACTTCCGTCCACACACACCTCTGTGGAGTATTT
GGACGTGTTGCGGCGAACGTTGGCGTATGACCAACAGTCGAGGCTGTCAG
CCAAGGACGCCTTGCGGCATGCGTTCTTTCGTGACTTACTCCAGACAATC
CCATCTAAGTCCACGCTCCCTCCACCAAGCGCCATTACCACAACCGTGAA
AATGACAGCCATATCCCCGCCTTTAGCGACATTGGCCAATCCTCCAGGGA
ACCTCCCGGGCGCAGCTTTCCCCATCGTCACCAGCATTCGCAAGATGAGA
GGTAACAAGCAGAGCAAGAAGCCTCGGGCTAAGGACGGTCAGTGCTTGCC
TTTAGTTGTGGATACCTCTGTCTCTTTCGCCGCCGCCAAAGTCACTGTGG
AGGCCAAGCGTAAAAAGGTGGGAAAAACTTGCGGAATGTTAGGGATAAGG
GAGCAAGTGCAGCTGCGCAAGTCGATGCGTTGCTTGCCGCCGCGTGGACT
GGTCGCCAAGCCGCTCTCATTCTGGCGGGGAAAGCCGCAGCAGGGGTAGT
AAATAGCGCACAATCGTCCTTATAAAAATAGTAGTGAAAACAAACTCACA
TGTATTGAAAGAAGTGGATGTTTTTGTAACATCCTTGAGAAAGACCACCA
CTTCCAACGCGAGCGAACAGACCTCTGCTAGGCTCCGTTTTTTCGCCGCT
CTGTCGTCTTCCCACTCGATATTTGTTTAGCTTCATGCTTCCATGTATGC
ACTGTGACATAATTTCGTCTTTCTCCTTTGTCGGTCTCAAATGCTGCTTT
GTAAGTCCAGTGAATGCATGTTATGGACAATCGCGGCTATTTTTAACGCC
GTTTCAGCCGTTGCAGGCCCATCCCATCTCCTCTCGCATTGGCAC

protein sequence of jgi.p|Nanoce1779_2|595080

>mRNA_6452-protein ID=mRNA_6452-protein|Name=jgi.p|Nanoce1779_2|595080|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MGKYVIEGKVGEGTFSDVLRVQHTCDGTFHAMKCLKSKIASVSQVKNLRE
VQALRRLTPHPHIVAWQDIIFEEATGRLALVFELLDANLYELIRGRRFPL
AADAVRTYTHQLLQALQYMHARGIFHRDIKPENVLVEKRTQTIKLADFGS
CRGIHSSPPYTEYISTRWYRSPECLLSNGRYGPPMDMWGVGCVMFEMSTL
RPLFCGDDDIDQLNRIHKVLGTPPTELLQAMRHRGQKGGDQAEGEDWTGG
RKDTYMEKEHRLLVFLPTQRGTGLDTLLPSTHTSVEYLDVLRRTLAYDQQ
SRLSAKDALRHAFFRDLLQTIPSKSTLPPPSAITTTVKMTAISPPLATLA
NPPGNLPGAAFPIVTSIRKMRGNKQSKKPRAKDGQCLPLVVDTSVSFAAA
KVTVEAKRKKVGKTCGMLGIREQVQLRKSMRCLPPRGLVAKPLSFWRGKP
QQG*

mRNA from alignment at scaffold_15:679351..681795+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6452 ID=mRNA_6452|Name=jgi.p|Nanoce1779_2|595080|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp|location=Sequence derived from alignment at scaffold_15:679351..681795+ (Nannochloropsis oceanica)
GTTCATTTGATTTCTTTTCTTTTTTTAACGCCGTGAGACTGGGCTGGGCC
TTCGTAAATTTCTGGCCCAGCTGCTCCGAAAGTCATGCAATGGGAAACGA
TGTGCCAATATGAGCAACCATCGTCTTAATGTGGAAAAGGATTTCATGTT
GTGTCTTAAAAACATACAAAGGCAAATATGATGTCAAGGTGTGGCCGCAC
ACCATAACCTCCTCCCTATCCTCTTGTCCACGCCATCGCCCGCACCAAAC
TATAAAGGATCCTACGAGTGACCATAATACAATTTCAACTTTGACGGTAC
CCTCCTACTTGCACTTAGCAGTGTAGACGCCGTTATTTGCCTATTTTAAT
CGTCAAGCAGACAGGCTGCACAATAATATGCTCGATGAAAAAGAAAACAA
ACATGGGCCTAGTTGTTTGAGTCTGAGGTTTGGCCTTCATGAATAAAAAC
TAAGCCACATCATCAAGAATGCCCCTCGATTCTCACAGCAGGACCCGGTA
AGCGCTGCTCATTACGCCATGCGCCCCTCTTTCTATAAGCCTCGGCAGTG
CCCACCTCGTAATCAATTTCGATGCATCATCTGCATGAAAAAAATGGTTC
TGGTCGCCCTGAGTTAGTCCGCGACTAACTATTTCAGGGCAATCAGCACA
TCTGTGACTTGACTATTTCTGGGCAACCAGCACATCTGTGACTTGATTCA
TATATCTACCACCTACAAACCCTCCGATAGGCCCGGAATGGGTAAATACG
TGATAGAAGGCAAGGTAGGCGAAGGCACTTTCAGCGACGTTCTCCGGGTA
CAGCATACCTGTGATGGAACCTTTCACGCCATGAAATGCTTAAAAAGCAA
GATTGCCTCCGTCAGTCAAGTGAAGAATTTACGGGAAGTTCAAGCGTTGA
GGCGGCTGACTCCTCATCCCCACATAGTCGCCTGGCAAGACATCATTTTC
GAGGAGGCCACCGGCCGCCTCGCCCTCGTTTTTGAGCTCCTTGACGCCAA
TCTCTACGAGCTCATTCGCGGCCGCCGCTTCCCCCTCGCGGCCGATGCTG
TCCGTACATACACCCATCAGCTACTGCAAGCCTTGCAGTACATGCACGCA
CGGGGCATCTTCCACCGCGACATTAAGCCTGAAAATGTGTTGGTGGAAAA
AAGGACGCAAACAATTAAGCTCGCCGATTTTGGTTCTTGCCGCGGGATTC
ATTCCTCGCCTCCGTACACTGAGTACATTTCTACACGCTGGTACCGATCC
CCGGAATGTCTCTTGTCCAATGGGAGGTATGGGCCTCCGATGGACATGTG
GGGAGTGGGCTGTGTAATGTTTGAAATGAGCACGCTGCGGCCTTTGTTTT
GCGGGGACGATGACATTGACCAATTGAATCGCATTCACAAAGTGTTGGGT
ACGCCACCCACTGAGTTGCTGCAGGCGATGCGTCATAGGGGACAGAAAGG
AGGGGACCAGGCGGAGGGGGAGGATTGGACGGGAGGGAGGAAGGATACGT
ATATGGAGAAAGAGCACCGCTTGCTGGTCTTCCTGCCGACGCAGCGAGGG
ACGGGGTTGGATACCTTACTTCCGTCCACACACACCTCTGTGGAGTATTT
GGACGTGTTGCGGCGAACGTTGGCGTATGACCAACAGTCGAGGCTGTCAG
CCAAGGACGCCTTGCGGCATGCGTTCTTTCGTGACTTACTCCAGACAATC
CCATCTAAGTCCACGCTCCCTCCACCAAGCGCCATTACCACAACCGTGAA
AATGACAGCCATATCCCCGCCTTTAGCGACATTGGCCAATCCTCCAGGGA
ACCTCCCGGGCGCAGCTTTCCCCATCGTCACCAGCATTCGCAAGATGAGA
GGTAACAAGCAGAGCAAGAAGCCTCGGGCTAAGGACGGTCAGTGCTTGCC
TTTAGTTGTGGATACCTCTGTCTCTTTCGCCGCCGCCAAAGTCACTGTGG
AGGCCAAGCGTAAAAAGGTGGGAAAAACTTGCGGAATGTTAGGGATAAGG
GAGCAAGTGCAGCTGCGCAAGTCGATGCGTTGCTTGCCGCCGCGTGGACT
GGTCGCCAAGCCGCTCTCATTCTGGCGGGGAAAGCCGCAGCAGGGGTAGT
AAATAGCGCACAATCGTCCTTATAAAAATAGTAGTGAAAACAAACTCACA
TGTATTGAAAGAAGTGGATGTTTTTGTAACATCCTTGAGAAAGACCACCA
CTTCCAACGCGAGCGAACAGACCTCTGCTAGGCTCCGTTTTTTCGCCGCT
CTGTCGTCTTCCCACTCGATATTTGTTTAGCTTCATGCTTCCATGTATGC
ACTGTGACATAATTTCGTCTTTCTCCTTTGTCGGTCTCAAATGCTGCTTT
GTAAGTCCAGTGAATGCATGTTATGGACAATCGCGGCTATTTTTAACGCC
GTTTCAGCCGTTGCAGGCCCATCCCATCTCCTCTCGCATTGGCAC

Coding sequence (CDS) from alignment at scaffold_15:679351..681795+

>mRNA_6452 ID=mRNA_6452|Name=jgi.p|Nanoce1779_2|595080|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_15:679351..681795+ (Nannochloropsis oceanica)
ATGGGTAAATACGTGATAGAAGGCAAGGTAGGCGAAGGCACTTTCAGCGA
CGTTCTCCGGGTACAGCATACCTGTGATGGAACCTTTCACGCCATGAAAT
GCTTAAAAAGCAAGATTGCCTCCGTCAGTCAAGTGAAGAATTTACGGGAA
GTTCAAGCGTTGAGGCGGCTGACTCCTCATCCCCACATAGTCGCCTGGCA
AGACATCATTTTCGAGGAGGCCACCGGCCGCCTCGCCCTCGTTTTTGAGC
TCCTTGACGCCAATCTCTACGAGCTCATTCGCGGCCGCCGCTTCCCCCTC
GCGGCCGATGCTGTCCGTACATACACCCATCAGCTACTGCAAGCCTTGCA
GTACATGCACGCACGGGGCATCTTCCACCGCGACATTAAGCCTGAAAATG
TGTTGGTGGAAAAAAGGACGCAAACAATTAAGCTCGCCGATTTTGGTTCT
TGCCGCGGGATTCATTCCTCGCCTCCGTACACTGAGTACATTTCTACACG
CTGGTACCGATCCCCGGAATGTCTCTTGTCCAATGGGAGGTATGGGCCTC
CGATGGACATGTGGGGAGTGGGCTGTGTAATGTTTGAAATGAGCACGCTG
CGGCCTTTGTTTTGCGGGGACGATGACATTGACCAATTGAATCGCATTCA
CAAAGTGTTGGGTACGCCACCCACTGAGTTGCTGCAGGCGATGCGTCATA
GGGGACAGAAAGGAGGGGACCAGGCGGAGGGGGAGGATTGGACGGGAGGG
AGGAAGGATACGTATATGGAGAAAGAGCACCGCTTGCTGGTCTTCCTGCC
GACGCAGCGAGGGACGGGGTTGGATACCTTACTTCCGTCCACACACACCT
CTGTGGAGTATTTGGACGTGTTGCGGCGAACGTTGGCGTATGACCAACAG
TCGAGGCTGTCAGCCAAGGACGCCTTGCGGCATGCGTTCTTTCGTGACTT
ACTCCAGACAATCCCATCTAAGTCCACGCTCCCTCCACCAAGCGCCATTA
CCACAACCGTGAAAATGACAGCCATATCCCCGCCTTTAGCGACATTGGCC
AATCCTCCAGGGAACCTCCCGGGCGCAGCTTTCCCCATCGTCACCAGCAT
TCGCAAGATGAGAGGTAACAAGCAGAGCAAGAAGCCTCGGGCTAAGGACG
GTCAGTGCTTGCCTTTAGTTGTGGATACCTCTGTCTCTTTCGCCGCCGCC
AAAGTCACTGTGGAGGCCAAGCGTAAAAAGGTGGGAAAAACTTGCGGAAT
GTTAGGGATAAGGGAGCAAGTGCAGCTGCGCAAGTCGATGCGTTGCTTGC
CGCCGCGTGGACTGGTCGCCAAGCCGCTCTCATTCTGGCGGGGAAAGCCG
CAGCAGGGGTAG

Synonyms

Publications