jgi.p|Nanoce1779_2|567155, mRNA_6451 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567155
Unique NamemRNA_6451
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length318
Alignment locationscaffold_15:678788..679105 +

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Properties
Property NameValue
TranscriptId567241
TrackFilteredModels2
ProteinId567155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:678788..679105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567155gene_6451Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567155mRNA_6451-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6451CDS_6451Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6451 ID=mRNA_6451|Name=jgi.p|Nanoce1779_2|567155|organism=Nannochloropsis oceanica|type=mRNA|length=318bp
ATGACAGCGGAGGGGGGATTCGCACGCTCATCCCGTCCCTTCTCTTTTCA
TGACTTTGACAAAATTTTGTTTCCCTCGTTTCCTCTCGTTGAAGCTGTGC
TGCACAATATTACATTGCTTTTCCATAGGGGCTTGGGCGGTAGCTACAGA
AAGAAGGTTAGAGGGTTGTGTAGAGTCCCAGGGGAGCGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGGAGGGGTGGGTGGAAAG
AGATACGATCTTCAATAA
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protein sequence of jgi.p|Nanoce1779_2|567155

>mRNA_6451-protein ID=mRNA_6451-protein|Name=jgi.p|Nanoce1779_2|567155|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MTAEGGFARSSRPFSFHDFDKILFPSFPLVEAVLHNITLLFHRGLGGSYR
KKVRGLCRVPGEREEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDGGVGGK
RYDLQ*
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mRNA from alignment at scaffold_15:678788..679105+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6451 ID=mRNA_6451|Name=jgi.p|Nanoce1779_2|567155|organism=Nannochloropsis oceanica|type=mRNA|length=318bp|location=Sequence derived from alignment at scaffold_15:678788..679105+ (Nannochloropsis oceanica)
ATGACAGCGGAGGGGGGATTCGCACGCTCATCCCGTCCCTTCTCTTTTCA TGACTTTGACAAAATTTTGTTTCCCTCGTTTCCTCTCGTTGAAGCTGTGC TGCACAATATTACATTGCTTTTCCATAGGGGCTTGGGCGGTAGCTACAGA AAGAAGGTTAGAGGGTTGTGTAGAGTCCCAGGGGAGCGGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGGAGGGGTGGGTGGAAAG AGATACGATCTTCAATAA
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Coding sequence (CDS) from alignment at scaffold_15:678788..679105+

>mRNA_6451 ID=mRNA_6451|Name=jgi.p|Nanoce1779_2|567155|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_15:678788..679105+ (Nannochloropsis oceanica)
ATGACAGCGGAGGGGGGATTCGCACGCTCATCCCGTCCCTTCTCTTTTCA
TGACTTTGACAAAATTTTGTTTCCCTCGTTTCCTCTCGTTGAAGCTGTGC
TGCACAATATTACATTGCTTTTCCATAGGGGCTTGGGCGGTAGCTACAGA
AAGAAGGTTAGAGGGTTGTGTAGAGTCCCAGGGGAGCGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGGAGGGGTGGGTGGAAAG
AGATACGATCTTCAATAA
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Synonyms
Publications