jgi.p|Nanoce1779_2|595075, mRNA_6450 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595075
Unique NamemRNA_6450
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length343
Alignment locationscaffold_15:677763..678105 -

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Properties
Property NameValue
TranscriptId595161
TrackFilteredModels2
ProteinId595075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:677763..678105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595075gene_6450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595075mRNA_6450-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6450CDS_6450Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6450 ID=mRNA_6450|Name=jgi.p|Nanoce1779_2|595075|organism=Nannochloropsis oceanica|type=mRNA|length=343bp
CCGTGAAGCAAGCAAGAATAATTTCAATATCAACATAAGACCGCGGGATC
TCATCCCCGCTCCCACCCACCACTGCAAGCAGATGCACACATATACTCAA
TTAGTGTGCTTGCTTTTGGTGAGCGTTGCCGCAGCGGGTCTCTGTTTTAC
CTGTGGCAGAGATTGCGGGCGGTGGTTGCCTACTACCGAATCGTGCAGGA
CGCACGCACTCTCCCTAGCATTCTTACTCAATTCCCGTACACCCTCTCAC
CCTCTCTTGTCTCACAAGTGCAGGCATCTTCTCCTGTTGTTGGACGACGG
TGTGCGTGTGTGTGGGGGATAGGAGAGCTCGTGTCCCTATCAC
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protein sequence of jgi.p|Nanoce1779_2|595075

>mRNA_6450-protein ID=mRNA_6450-protein|Name=jgi.p|Nanoce1779_2|595075|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MHTYTQLVCLLLVSVAAAGLCFTCGRDCGRWLPTTESCRTHALSLAFLLN
SRTPSHPLLSHKCRHLLLLLDDGVRVCGG*
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mRNA from alignment at scaffold_15:677763..678105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6450 ID=mRNA_6450|Name=jgi.p|Nanoce1779_2|595075|organism=Nannochloropsis oceanica|type=mRNA|length=343bp|location=Sequence derived from alignment at scaffold_15:677763..678105- (Nannochloropsis oceanica)
CCGTGAAGCAAGCAAGAATAATTTCAATATCAACATAAGACCGCGGGATC
TCATCCCCGCTCCCACCCACCACTGCAAGCAGATGCACACATATACTCAA
TTAGTGTGCTTGCTTTTGGTGAGCGTTGCCGCAGCGGGTCTCTGTTTTAC
CTGTGGCAGAGATTGCGGGCGGTGGTTGCCTACTACCGAATCGTGCAGGA
CGCACGCACTCTCCCTAGCATTCTTACTCAATTCCCGTACACCCTCTCAC
CCTCTCTTGTCTCACAAGTGCAGGCATCTTCTCCTGTTGTTGGACGACGG
TGTGCGTGTGTGTGGGGGATAGGAGAGCTCGTGTCCCTATCAC
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Coding sequence (CDS) from alignment at scaffold_15:677763..678105-

>mRNA_6450 ID=mRNA_6450|Name=jgi.p|Nanoce1779_2|595075|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_15:677763..678105- (Nannochloropsis oceanica)
ATGCACACATATACTCAATTAGTGTGCTTGCTTTTGGTGAGCGTTGCCGC
AGCGGGTCTCTGTTTTACCTGTGGCAGAGATTGCGGGCGGTGGTTGCCTA
CTACCGAATCGTGCAGGACGCACGCACTCTCCCTAGCATTCTTACTCAAT
TCCCGTACACCCTCTCACCCTCTCTTGTCTCACAAGTGCAGGCATCTTCT
CCTGTTGTTGGACGACGGTGTGCGTGTGTGTGGGGGATAG
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Synonyms
Publications