jgi.p|Nanoce1779_2|94878, mRNA_6448 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|94878
Unique NamemRNA_6448
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length614
Alignment locationscaffold_15:672208..674254 -

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Properties
Property NameValue
TranscriptId94964
TrackFilteredModels2
ProteinId94878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:672208..674254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94878gene_6448Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94878mRNA_6448-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6448CDS_6448Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6448 ID=mRNA_6448|Name=jgi.p|Nanoce1779_2|94878|organism=Nannochloropsis oceanica|type=mRNA|length=614bp
TTTCCAGGAATTCGTGGACACCTACGGCGTCCCTCGCTATCGAGAGGCCA
ACCCCGCCCTCTTCACCGCCGCCACCTTCCCCTTCCTCTTTGCCGTCATG
TACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGTATGGGAGTCTATCT
GGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCCAGGCGCCCTTGGGG
CCCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTTTGTTCGCCTTT
TATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCCCTCAACTTCTT
TGCTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCAAGGCGGTGGCCCTT
CATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTTGGCGTGGACCCGGC
GTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAATTCGTTGAAGATGA
AGCTCTCGGTCGTCCTCGGCATCATCCACATGACGTGGGGCATTTTGCTG
CGTGGCGCGAACGCCCTCTACTTCAAGCAGAACGTCGATTTCGCGTTTGA
ATTCCTTCCCATGATTATCTCCCTCCTGCCCACCTCCCGCGACATCCACG
GCCACGGACCTTTC
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protein sequence of jgi.p|Nanoce1779_2|94878

>mRNA_6448-protein ID=mRNA_6448-protein|Name=jgi.p|Nanoce1779_2|94878|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MYGDMGHGFLLFCMGVYLVVTQAKAESRNPGALGALYPARYMILLMGLFA
FYSGMIYNDYFALALNFFAPSSLAQSGGRQGGGPSSLWRFRASLSVWRGP
GVAPVGQFSAVSQFVEDEALGRPRHHPHDVGHFAAWRERPLLQAERRFRV
*
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mRNA from alignment at scaffold_15:672208..674254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6448 ID=mRNA_6448|Name=jgi.p|Nanoce1779_2|94878|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at scaffold_15:672208..674254- (Nannochloropsis oceanica)
TTTCCAGGTACACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCACAGCTTTCAGTCTGTGTTCGTCGCAGCTGCTTA
CCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTGAAGGAATTCGTGGACACCTACGGCGTCCCTCGCTATCGAGAGGCCAA
CCCCGCCCTCTTCACCGCCGCCACCTTCCCCTTCCTCTTTGCCGTCATGT
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGTTGTCTGTCAAAGTCTAGGAAA
GTCAGCTTACGTTCCACTCACCCTTTCCTCCTTCCCTTCCTTTTTTTCCC
CCCTCCCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTATCTC
CCCCTTCCGCCCGCCGACAGGTACGGCGACATGGGCCACGGTTTCCTCCT
CTTCTGTATGGGAGTCTATCTGGTGGTCACGCAGGCCAAGGCGGAATCTC
GCAATCCAGGCGCCCTTGGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGACGGACACCAGGCCCTCGTCAGCCGAGATA
ATAACATGAAGTTCAAGCACGGGTCTCATTTTCTTGCTCATCCTCCCTCC
CTCCCTCCCCCCCTCCCTCCCTCCCCCCCTCCCCAGGCCCTGTACCCCGC
GCGCTACATGATTCTACTCATGGGTTTGTTCGCCTTTTATTCGGGCATGA
TTTACAACGACTATTTTGCCCTGGCCCTCAACTTCTTTGGCTCCCGCTGG
AGTTTTGCAGGCGTGGAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGAACGGGGCGGGATTTGACGGATAGCCATCTCACGAACCCCTCCCTCCC
TCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTCGCTTGCTCAATCA
GGAGGGCGGCAAGGCGGTGGCCCTTCATCCTTATGGAGATTTCGCGCAAG
TCTATCCGTTTGGCGTGGACCCGGCGTGGCACCTGTCGGACAATTCTCTG
CTGTTTCTCAATTCGTTGAAGGTGAGGGGGGAAGGGAAGGGAGGGAAGGG
AGGAAAGGGAGGGAGGGAGGGAGGGAGAGAAGGGAGGGAAGGGAGGGGAG
GGGAGGAGCGAAAGAGAGAAAACTGACGACAAAGTGCCATAGCAGAGACA
GGGCGCGAACCCACATCCTCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCCTTGCAGATGAAGCTCTCGGTCGTCCTCGGCATCATCCACAT
GACGTGGGGCATTTTGCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGA
ACGTCGATTTCGCGTTTGAATTCCTTCCCATGATTATCTTCGACCTGGCC
CTATTTGGGTGGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTCATCATTCCCTCGTC
CCCCCTCTCCTCATTCCTCACTTTCCTCCTTTCGTCATCTCACCGCCTCT
CCCTCCCTCCCTCCCTCCCTCCCCTCCCTCCTAGGTACACGGTGGTGCTG
ATCTTTGTCAAGTGGAGCATTAATTGGGAAGAGCGGATGCTCTCTGCCTC
CTGCCTGGGCTTCGATGCGGCCACGGGGGTGAGTTGAAGAAGGAGAAGGG
AGGGAGGAGAGGAGGAGGAGGTAGAGGAGGAGGAGGAATGAGAGGGAGGA
CGAACAGAAGAAAAAACAATAAAAGGAAGAAGGAAGAGCAGGAGGACGAG
GAGGAAGAAGAAGAAGAAGAAGAAGAGGAGAGAGAAGAAGAAGGAGGAGA
AGAAGAAGAAGGGCCTTTGTATGCAGTTACCCTCCCTCCCTCCTTCCCTC
CCTCCCTCCTGCCCACCTCCCGCGACATCCACGGCCACGGACCTTTC
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Coding sequence (CDS) from alignment at scaffold_15:672208..674254-

>mRNA_6448 ID=mRNA_6448|Name=jgi.p|Nanoce1779_2|94878|organism=Nannochloropsis oceanica|type=CDS|length=2265bp|location=Sequence derived from alignment at scaffold_15:672208..674254- (Nannochloropsis oceanica)
ATGAAGCTCTCGGTCGTCCTCGGCATCATCCACATGACGTGGGGCATTTT
GCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGAACGTCGATTTCGCGT
TTGACTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCAAGGCGGTGGCCC
TTCATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTTGGCGTGGACCCG
GCGTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAATTCGTTGAAGGC
CCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTTTGTTCGCCTTTT
ATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCCCTCAACTTCTTT
GGTACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGTATGGGAGTCTAT
CTGGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCCAGGCGCCCTTGG
GATATGAAGCTCTCGGTCGTCCTCGGCATCATCCACATGACGTGGGGCAT
TTTGCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGAACGTCGATTTCG
CGTTTGACTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCAAGGCGGTGG
CCCTTCATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTTGGCGTGGAC
CCGGCGTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAATTCGTTGAA
GGCCCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTTTGTTCGCCT
TTTATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCCCTCAACTTC
TTTGGTACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGTATGGGAGTC
TATCTGGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCCAGGCGCCCT
TGGGATATGAAGCTCTCGGTCGTCCTCGGCATCATCCACATGACGTGGGG
CATTTTGCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGAACGTCGATT
TCGCGTTTGACTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCAAGGCGG
TGGCCCTTCATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTTGGCGTG
GACCCGGCGTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAATTCGTT
GAAGGCCCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTTTGTTCG
CCTTTTATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCCCTCAAC
TTCTTTGGTACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGTATGGGA
GTCTATCTGGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCCAGGCGC
CCTTGGGATATGAAGCTCTCGGTCGTCCTCGGCATCATCCACATGACGTG
GGGCATTTTGCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGAACGTCG
ATTTCGCGTTTGACTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCAAGG
CGGTGGCCCTTCATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTTGGC
GTGGACCCGGCGTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAATTC
GTTGAAGGCCCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTTTGT
TCGCCTTTTATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCCCTC
AACTTCTTTGGTACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGTATG
GGAGTCTATCTGGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCCAGG
CGCCCTTGGGATATGAAGCTCTCGGTCGTCCTCGGCATCATCCACATGAC
GTGGGGCATTTTGCTGCGTGGCGCGAACGCCCTCTACTTCAAGCAGAACG
TCGATTTCGCGTTTGACTCCCTCCTCGCTTGCTCAATCAGGAGGGCGGCA
AGGCGGTGGCCCTTCATCCTTATGGAGATTTCGCGCAAGTCTATCCGTTT
GGCGTGGACCCGGCGTGGCACCTGTCGGACAATTCTCTGCTGTTTCTCAA
TTCGTTGAAGGCCCTGTACCCCGCGCGCTACATGATTCTACTCATGGGTT
TGTTCGCCTTTTATTCGGGCATGATTTACAACGACTATTTTGCCCTGGCC
CTCAACTTCTTTGGTACGGCGACATGGGCCACGGTTTCCTCCTCTTCTGT
ATGGGAGTCTATCTGGTGGTCACGCAGGCCAAGGCGGAATCTCGCAATCC
AGGCGCCCTTGGGAT
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Synonyms
Publications