jgi.p|Nanoce1779_2|672016, mRNA_6447 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672016
Unique Name	mRNA_6447
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1509
Alignment location	scaffold_15:666943..669236 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672102
Track	FilteredModels2
ProteinId	672016

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:666943..669236 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672016	gene_6447	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672016	mRNA_6447-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6447	CDS_6447	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:666943..669236+
coding sequence from alignment at scaffold_15:666943..669236+

mRNA sequence

>mRNA_6447 ID=mRNA_6447|Name=jgi.p|Nanoce1779_2|672016|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
AGGCAAGCCGAGGGGAATCAAGTATGCACGCAGTGTTGGCCAACGTGCGG
TCCCAATCCGCGGAACGGGTGGGTTTGTTCTCAGCCTTTCTGCGTGGGAG
GAGAATTGACGTCGTCATAGCCTCGAGAAGACTGGGCATCGCTGCCACCA
TCATCACCACATCCTCTCCTTGTCCCCGCCGAGGTCGCGCGGCTCAAGGC
TCTGGCGGAGATGGTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGAT
GGAAAGCGTGCAAAGAGCTAGGCATTCGCTATTTGACATACGGAAAGACT
CGCGTTGACCTGGAGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAG
AACAACACCCTCCATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAG
GAGGGGTCAAGACCTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAG
GACGCAGAATTGTGGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGG
CAAAGACGGGAAGGAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGG
AGGAAGTTGAGACGGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGCG
GGAAAGAGGGGGCATGTCGAGGCGATGGTGATGTGCGGGAATCTGCTCTA
TGAGAATGGAAACGTGGAAGGGAGGAGAGGAGGAGGGAGGGGAGGAGGGA
CAGAGGAAGGAAAGACGAATTTGGAGCTGGCGCTGGAGTGGTATTGGAAG
GCGGTGGGGGAGGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCATCCGGA
CGCGTGGTACAATCTGGGAAGGATTTATGCAGAGGGAGGAAAGGGGGTGA
AGAGGGACGTCGACAGGGCGAAGGACTGCTTCGAGAAGGCGGCAAGACAC
CCGGAGGAGAAGGGAGGAGCAGCGGCGTATATGCTGGGGCACCTGTGCAG
GGGTGTCGAGGAAGGGGGGGAGGGAGGGAAGGAGGGAGGGGGGGATGTGC
GGAAGGCGGTGGAGTGGTGGAAAGAGGCGTGTGATATCAAGGATCATCCA
GCGGCGTGCTATGACCTGGCGCTGCTGTATCGAAATGGAGAGGGCCAGGT
CCCTCCTTCCTACTCCCTCTATCGGCATTACATCGCCAAAGCCGAGGGCC
TCGGCGATGCTGAAGCGCTTTTCCATCTCGGACACATGTACTTGCAAGGG
GAGGAAGGAGGGACGGAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGA
GAAGAATGAAGGAAAGGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGG
GAGGACATGCGGAGGCGATGACGACGATGGGCGTCCTGCGCTACCGGGAG
GGGAGGTGGGAGGAGGCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGG
GAGCGAGGAAGCGTGGAGGAATCTGGCAAGTATGTACATTGCGGGGGAGG
GGGTGGCGAAGGACGAGGGTATGGCCCGGAATATCGTCAAAATCCTGCTG
AAGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|672016

>mRNA_6447-protein ID=mRNA_6447-protein|Name=jgi.p|Nanoce1779_2|672016|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MVEGMEEGKEVKGWKACKELGIRYLTYGKTRVDLEHAVEWLETAGTRTTP
SIPPSLAHRGDSRGGVKTSLSPALLPPGEEDAELWYARGIACLRLDGKDG
KEGGEEEEREGWTEEVETETYGAQTGPEFAGKRGHVEAMVMCGNLLYENG
NVEGRRGGGRGGGTEEGKTNLELALEWYWKAVGEGGREGGLEGGHPDAWY
NLGRIYAEGGKGVKRDVDRAKDCFEKAARHPEEKGGAAAYMLGHLCRGVE
EGGEGGKEGGGDVRKAVEWWKEACDIKDHPAACYDLALLYRNGEGQVPPS
YSLYRHYIAKAEGLGDAEALFHLGHMYLQGEEGGTEEGREGEWTRIEKNE
GKAKEYFERAGREGGHAEAMTTMGVLRYREGRWEEAARWYEAGGEAGSEE
AWRNLASMYIAGEGVAKDEGMARNIVKILLKK*

mRNA from alignment at scaffold_15:666943..669236+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6447 ID=mRNA_6447|Name=jgi.p|Nanoce1779_2|672016|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_15:666943..669236+ (Nannochloropsis oceanica)
AGGCAAGCCGAGGGGAATCAAGTATGCACGCAGTGTTGGCCAACGTGCGG
TCCCAATCCGCGGAACGGGTGGGTTTGTTCTCAGCCTTTCTGCGTGGGAG
GAGAATTGACGTCGTCATAGCCTCGAGAAGACTGGGGTACGTGAACAGGA
GCTGCATCATGCCCAAGAGAAATACCATGCACAGTTTCACCTGCAGGACC
ACCAGCAAAAGTGATGACAGAAGTAGAAATAGCAGAACGAATAGCAGCAG
TGGGATTACACGCTATTTGGCTTTCGCATCCGCCACCGACGCCCGACCAT
CATCAAGGCTACTACTATCTGCAGCATCTCCATTTAAGGCAACAACAACA
CAACGACGCGTGTTCTCCTCCTCCTCTTCCTCTTCTTCCTCATTGCCTTC
ATCCTCCTCTTCCCCTCCCTCCCTTCCATCTTCAGCATCGCTGCCACCAT
CATCACCACATCCTCTCCTTGTCCCCGCCGAGGTCGCGCGGCTCAAGGCT
CTGGCGGAGATGGTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGATG
GAAAGCGTGCAAAGAGCTAGGCATTCGCTATTTGACATGTACGTGATCGG
AGGCATGGGGAGGGAGAGAGGGAGAAAGGGAGGGAGGGAGGGAGAGAAAG
AGGGATTTAATTTGTGACAGCTGTAATCTACTTATTGTATTGCAACCCCC
TTCCTACTACACTAGGCAGATATCCCTCCTCCCTCCCTGCCCTCCTCCAT
CCCCTTTTCCCCCTCGTTGTTCCTCCCTCCCTCAGCTCTCCCTGGCCCCT
CCCTCCCCCCTTCCATTTATAAACCAGACGGAAAGACTCGCGTTGACCTG
GAGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAGAACAACACCCTC
CATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAGGAGGGGTCAAGA
CCTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAGGACGCAGAATTG
TGGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGGCAAAGACGGGAA
GGAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGGAGGAAGTTGAGA
CGGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGTGCGTGTCGTGAAG
AGGAGAGCGAACAAGGAGAGAAAGGCCCGAGGGAAGGAGGGAGGGGGGGG
AGGGAGGGAGGGTGCAGATGTGGCATCGGAGGGGGATCCGTCGGCTGGTG
GAGGCGGGAAAGAGGGGGCATGTCGAGGCGATGGTGATGTGCGGGAATCT
GCTCTATGAGAATGGAAACGTGGAAGGGAGGAGAGGAGGAGGGAGGGGAG
GAGGGACAGAGGAAGGAAAGACGAATTTGGAGCTGGCGCTGGAGTGGTAT
TGGAAGGCGGTGGGGGAGGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCA
TCCGGACGCGTGGTACAATCTGGGAAGGATTTATGCAGAGGGAGGAAAGG
GGGTGAAGAGGGACGTCGACAGGGCGAAGGACTGCTTCGAGAAGGCGGCA
AGACACCCGGAGGAGAAGGGAGGAGCAGCGGCGTATATGCTGGGGCACCT
GTGCAGGGGTGTCGAGGAAGGGGGGGAGGGAGGGAAGGAGGGAGGGGGGG
ATGTGCGGAAGGCGGTGGAGTGGTGGAAAGAGGCGTGTGATATCAAGGAT
CATCCAGCGGCGTGCTATGACCTGGCGCTGCTGTATCGAAATGGAGAGGG
CCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAA
TCTGTTCTAATCAGTCAACGCCTGTTTCGATTTTTCACTTCCCCATCCGC
CACACCTCATTCCTTCCTTTCCTCGCTCCTTAGGTCCCTCCTTCCTACTC
CCTCTATCGGCATTACATCGCCAAAGCCGAGGGCCTCGGCGATGCTGAAG
CGCTTTTCCATCTCGGACACATGTACTTGCAAGGGGAGGAAGGAGGGACG
GAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGAGAAGAATGAAGGAAA
GGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGGGAGGACATGCGGAGG
CGATGACGACGATGGGCGTCCTGCGCTACCGGGAGGGGAGGTGGGAGGAG
GCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGGGAGCGAGGAAGCGTG
GAGGAATCTGGCAAGTATGTACATTGCGGGGGAGGGGGTGGCGAAGGACG
AGGGTATGGCCCGGAATATCGTCAAAATCCTGCTGAAGAAGTAG

Coding sequence (CDS) from alignment at scaffold_15:666943..669236+

>mRNA_6447 ID=mRNA_6447|Name=jgi.p|Nanoce1779_2|672016|organism=Nannochloropsis oceanica|type=CDS|length=5196bp|location=Sequence derived from alignment at scaffold_15:666943..669236+ (Nannochloropsis oceanica)
ATGGTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGATGGAAAGCGTG
CAAAGAGCTAGGCATTCGCTATTTGACATACGGAAAGACTCGCGTTGACC
TGGAGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAGAACAACACCC
TCCATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAGGAGGGGTCAA
GACCTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAGGACGCAGAAT
TGTGGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGGCAAAGACGGG
AAGGAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGGAGGAAGTTGA
GACGGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGCGGGAAAGAGGG
GGCATGTCGAGGCGATGGTGATGTGCGGGAATCTGCTCTATGAGAATGGA
AACGTGGAAGGGAGGAGAGGAGGAGGGAGGGGAGGAGGGACAGAGGAAGG
AAAGACGAATTTGGAGCTGGCGCTGGAGTGGTATTGGAAGGCGGTGGGGG
AGGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCATCCGGACGCGTGGTAC
AATCTGGGAAGGATTTATGCAGAGGGAGGAAAGGGGGTGAAGAGGGACGT
CGACAGGGCGAAGGACTGCTTCGAGAAGGCGGCAAGACACCCGGAGGAGA
AGGGAGGAGCAGCGGCGTATATGCTGGGGCACCTGTGCAGGGGTGTCGAG
GAAGGGGGGGAGGGAGGGAAGGAGGGAGGGGGGGATGTGCGGAAGGCGGT
GGAGTGGTGGAAAGAGGCGTGTGATATCAAGGATCATCCAGCGGCGTGCT
ATGACCTGGCGCTGCTGTATCGAAATGGAGAGGGCCAGGTCCCTCCTTCC
TACTCCCTCTATCGGCATTACATCGCCAAAGCCGAGGGCCTCGGCGATGC
TGAAGCGCTTTTCCATCTCGGACACATGTACTTGCAAGGGGAGGAAGGAG
GGACGGAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGAGAAGAATGAA
GGAAAGGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGGGAGGACATGC
GGAGGCGATGACGACGATGGGCGTCCTGCGCTACCGGGAGGGGAGGTGGG
AGGAGGCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGGGAGCGAGGAA
GCGTGGAGGAATCTGGCAAGTATGTACATTGCGGGGGAGGGGGTGGCGAA
GGACGAGGGTATGGCCCGGAATATCGTCAAAATCCTGCTGAAGAAGTAGA
TGGTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGATGGAAAGCGTGC
AAAGAGCTAGGCATTCGCTATTTGACATACGGAAAGACTCGCGTTGACCT
GGAGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAGAACAACACCCT
CCATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAGGAGGGGTCAAG
ACCTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAGGACGCAGAATT
GTGGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGGCAAAGACGGGA
AGGAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGGAGGAAGTTGAG
ACGGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGCGGGAAAGAGGGG
GCATGTCGAGGCGATGGTGATGTGCGGGAATCTGCTCTATGAGAATGGAA
ACGTGGAAGGGAGGAGAGGAGGAGGGAGGGGAGGAGGGACAGAGGAAGGA
AAGACGAATTTGGAGCTGGCGCTGGAGTGGTATTGGAAGGCGGTGGGGGA
GGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCATCCGGACGCGTGGTACA
ATCTGGGAAGGATTTATGCAGAGGGAGGAAAGGGGGTGAAGAGGGACGTC
GACAGGGCGAAGGACTGCTTCGAGAAGGCGGCAAGACACCCGGAGGAGAA
GGGAGGAGCAGCGGCGTATATGCTGGGGCACCTGTGCAGGGGTGTCGAGG
AAGGGGGGGAGGGAGGGAAGGAGGGAGGGGGGGATGTGCGGAAGGCGGTG
GAGTGGTGGAAAGAGGCGTGTGATATCAAGGATCATCCAGCGGCGTGCTA
TGACCTGGCGCTGCTGTATCGAAATGGAGAGGGCCAGGTCCCTCCTTCCT
ACTCCCTCTATCGGCATTACATCGCCAAAGCCGAGGGCCTCGGCGATGCT
GAAGCGCTTTTCCATCTCGGACACATGTACTTGCAAGGGGAGGAAGGAGG
GACGGAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGAGAAGAATGAAG
GAAAGGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGGGAGGACATGCG
GAGGCGATGACGACGATGGGCGTCCTGCGCTACCGGGAGGGGAGGTGGGA
GGAGGCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGGGAGCGAGGAAG
CGTGGAGGAATCTGGCAAGTATGTACATTGCGGGGGAGGGGGTGGCGAAG
GACGAGGGTATGGCCCGGAATATCGTCAAAATCCTGCTGAAGAAGTAGAT
GGTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGATGGAAAGCGTGCA
AAGAGCTAGGCATTCGCTATTTGACATACGGAAAGACTCGCGTTGACCTG
GAGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAGAACAACACCCTC
CATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAGGAGGGGTCAAGA
CCTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAGGACGCAGAATTG
TGGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGGCAAAGACGGGAA
GGAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGGAGGAAGTTGAGA
CGGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGCGGGAAAGAGGGGG
CATGTCGAGGCGATGGTGATGTGCGGGAATCTGCTCTATGAGAATGGAAA
CGTGGAAGGGAGGAGAGGAGGAGGGAGGGGAGGAGGGACAGAGGAAGGAA
AGACGAATTTGGAGCTGGCGCTGGAGTGGTATTGGAAGGCGGTGGGGGAG
GGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCATCCGGACGCGTGGTACAA
TCTGGGAAGGATTTATGCAGAGGGAGGAAAGGGGGTGAAGAGGGACGTCG
ACAGGGCGAAGGACTGCTTCGAGAAGGCGGCAAGACACCCGGAGGAGAAG
GGAGGAGCAGCGGCGTATATGCTGGGGCACCTGTGCAGGGGTGTCGAGGA
AGGGGGGGAGGGAGGGAAGGAGGGAGGGGGGGATGTGCGGAAGGCGGTGG
AGTGGTGGAAAGAGGCGTGTGATATCAAGGATCATCCAGCGGCGTGCTAT
GACCTGGCGCTGCTGTATCGAAATGGAGAGGGCCAGGTCCCTCCTTCCTA
CTCCCTCTATCGGCATTACATCGCCAAAGCCGAGGGCCTCGGCGATGCTG
AAGCGCTTTTCCATCTCGGACACATGTACTTGCAAGGGGAGGAAGGAGGG
ACGGAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGAGAAGAATGAAGG
AAAGGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGGGAGGACATGCGG
AGGCGATGACGACGATGGGCGTCCTGCGCTACCGGGAGGGGAGGTGGGAG
GAGGCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGGGAGCGAGGAAGC
GTGGAGGAATCTGGCAAGTATGTACATTGCGGGGGAGGGGGTGGCGAAGG
ACGAGGGTATGGCCCGGAATATCGTCAAAATCCTGCTGAAGAAGTAGATG
GTGGAAGGGATGGAGGAAGGGAAAGAGGTCAAAGGATGGAAAGCGTGCAA
AGAGCTAGGCATTCGCTATTTGACATACGGAAAGACTCGCGTTGACCTGG
AGCATGCTGTGGAATGGTTGGAAACGGCCGGCACTAGAACAACACCCTCC
ATCCCTCCCTCCCTCGCCCATCGCGGTGACTCAAGAGGAGGGGTCAAGAC
CTCCCTCTCTCCCGCCCTCCTACCTCCTGGGGAAGAGGACGCAGAATTGT
GGTATGCGAGGGGGATAGCTTGTTTGCGCTTGGACGGCAAAGACGGGAAG
GAGGGAGGGGAGGAGGAAGAGAGGGAGGGCTGGACGGAGGAAGTTGAGAC
GGAGACATATGGTGCTCAGACGGGGCCGGAGTTTGCGGGAAAGAGGGGGC
ATGTCGAGGCGATGGTGATGTGCGGGAATCTGCTCTATGAGAATGGAAAC
GTGGAAGGGAGGAGAGGAGGAGGGAGGGGAGGAGGGACAGAGGAAGGAAA
GACGAATTTGGAGCTGGCGCTGGAGTGGTATTGGAAGGCGGTGGGGGAGG
GAGGGCGGGAGGGAGGGCTGGAGGGAGGGCATCCGGACGCGTGGTACAAT
CTGGGAAGGATTTATGCAGAGGGAGGAAAGGGGGTGAAGAGGGACGTCGA
CAGGGCGAAGGACTGCTTCGAGAAGGCGGCAAGACACCCGGAGGAGAAGG
GAGGAGCAGCGGCGTATATGCTGGGGCACCTGTGCAGGGGTGTCGAGGAA
GGGGGGGAGGGAGGGAAGGAGGGAGGGGGGGATGTGCGGAAGGCGGTGGA
GTGGTGGAAAGAGGCGTGTGATATCAAGGATCATCCAGCGGCGTGCTATG
ACCTGGCGCTGCTGTATCGAAATGGAGAGGGCCAGGTCCCTCCTTCCTAC
TCCCTCTATCGGCATTACATCGCCAAAGCCGAGGGCCTCGGCGATGCTGA
AGCGCTTTTCCATCTCGGACACATGTACTTGCAAGGGGAGGAAGGAGGGA
CGGAGGAAGGGAGGGAGGGAGAGTGGACGAGGATTGAGAAGAATGAAGGA
AAGGCAAAGGAGTATTTTGAGAGGGCAGGGAGGGAGGGAGGACATGCGGA
GGCGATGACGACGATGGGCGTCCTGCGCTACCGGGAGGGGAGGTGGGAGG
AGGCAGCTCGGTGGTATGAGGCAGGGGGGGAGGCAGGGAGCGAGGAAGCG
TGGAGGAATCTGGCAAGTATGTACATTGCGGGGGAGGGGGTGGCGAAGGA
CGAGGGTATGGCCCGGAATATCGTCAAAATCCTGCTGAAGAAGTAG

Synonyms

Publications