jgi.p|Nanoce1779_2|94767, mRNA_6446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|94767
Unique NamemRNA_6446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length403
Alignment locationscaffold_15:666450..666852 -

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Properties
Property NameValue
TranscriptId94853
TrackFilteredModels2
ProteinId94767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:666450..666852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94767gene_6446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94767mRNA_6446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6446CDS_6446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6446 ID=mRNA_6446|Name=jgi.p|Nanoce1779_2|94767|organism=Nannochloropsis oceanica|type=mRNA|length=403bp
GTTATACTTGTTTGAATTGGTTTTGAATAAGACGTCCCTCCTGCAATACA
GCAGGAGATGACCTGCGACGGATGGCAACAAACACGGCTGCCACGCCCCT
CTTTCTTCCAATCAAATTTGTTGTCGTAGTGGCAGTATCTATGGTTGTCG
GTCGAACAGGAAAGACGTGCGTGGCGTGTTTTGACACATGCATGGGCCTT
CTATTTGTGCGGTCCTCCCTGTTGTTCCATTCTCCCTCACTCCTTCCCTG
CCTCAACACCCTATCGCGTTCAGGCACAGATTTCTTTTCGTAATAGTCTC
TATATCCCGTCATGTATTGCCATAATAACTTACTTATACCATCCGTTTCT
CTCATCCGTCCCTCCTTTGTCCAACCCACTTCTCGATCTAACCACCCATC
CAC
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protein sequence of jgi.p|Nanoce1779_2|94767

>mRNA_6446-protein ID=mRNA_6446-protein|Name=jgi.p|Nanoce1779_2|94767|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MATNTAATPLFLPIKFVVVVAVSMVVGRTGKTCVACFDTCMGLLFVRSSL
LFHSPSLLPCLNTLSRSGTDFFS*
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mRNA from alignment at scaffold_15:666450..666852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6446 ID=mRNA_6446|Name=jgi.p|Nanoce1779_2|94767|organism=Nannochloropsis oceanica|type=mRNA|length=403bp|location=Sequence derived from alignment at scaffold_15:666450..666852- (Nannochloropsis oceanica)
GTTATACTTGTTTGAATTGGTTTTGAATAAGACGTCCCTCCTGCAATACA
GCAGGAGATGACCTGCGACGGATGGCAACAAACACGGCTGCCACGCCCCT
CTTTCTTCCAATCAAATTTGTTGTCGTAGTGGCAGTATCTATGGTTGTCG
GTCGAACAGGAAAGACGTGCGTGGCGTGTTTTGACACATGCATGGGCCTT
CTATTTGTGCGGTCCTCCCTGTTGTTCCATTCTCCCTCACTCCTTCCCTG
CCTCAACACCCTATCGCGTTCAGGCACAGATTTCTTTTCGTAATAGTCTC
TATATCCCGTCATGTATTGCCATAATAACTTACTTATACCATCCGTTTCT
CTCATCCGTCCCTCCTTTGTCCAACCCACTTCTCGATCTAACCACCCATC
CAC
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Coding sequence (CDS) from alignment at scaffold_15:666450..666852-

>mRNA_6446 ID=mRNA_6446|Name=jgi.p|Nanoce1779_2|94767|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_15:666450..666852- (Nannochloropsis oceanica)
ATGGCAACAAACACGGCTGCCACGCCCCTCTTTCTTCCAATCAAATTTGT
TGTCGTAGTGGCAGTATCTATGGTTGTCGGTCGAACAGGAAAGACGTGCG
TGGCGTGTTTTGACACATGCATGGGCCTTCTATTTGTGCGGTCCTCCCTG
TTGTTCCATTCTCCCTCACTCCTTCCCTGCCTCAACACCCTATCGCGTTC
AGGCACAGATTTCTTTTCGTAA
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Synonyms
Publications