jgi.p|Nanoce1779_2|94768, mRNA_6445 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|94768
Unique NamemRNA_6445
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1712
Alignment locationscaffold_15:664738..666449 -

Link to JBrowse

Properties
Property NameValue
TranscriptId94854
TrackFilteredModels2
ProteinId94768
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:664738..666449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94768gene_6445Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|94768mRNA_6445-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6445CDS_6445Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6445 ID=mRNA_6445|Name=jgi.p|Nanoce1779_2|94768|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
AGGCAGGCCCTCTCCATCCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCA
CCTCAACCCCATTTCTACCATCATTTACATCCCTTTCATCCAAAGGCCAC
TCCACAAGTTATGGTTTCTCCGCACGAGCTTTCGGACCTGACCCCAGCGC
TCGTCGCGCAACCCATTCATACTGGTCCAGGCCCCACCTACCCCCAAGCC
AATAACCCTCAGTATCCTGTCAATTCCCAGCCCTCGCAACTCGAAGCCCG
GCAGGCCGCAGAAGCCCGGGCAGCTCTGGTAGAGCAAATGATCGAGGCCA
GCAAGGAAGGGAATGTGGCTGTCGCGCATGCTCTCTTGCTCCAAGACCCT
ACCCTTGCCTCCTGCCGTGACAGCGTGGGACAGTCCCCCCTAATGTGGGC
CGCTTACAAAGGGTATACTGCCTTAGCCGTCCTCTTGATTCAAACCAACG
CCCCCGTGGACGACCACGACTGTCAATCCTCTCGCTCCGCCCTGTACATG
GCTTGCGAATTTGGGAACTGGCCTGTGGCCTCCTTGCTCCTCCAACACGG
CGCCAACCCTTCCTTCCGCCGTCAACTATACGGACGAACCTGCCTTCAAA
TCGCCGCCTACAATAACCATGCCCACGTCGTGCAGGGTGTCCTGGCTTTT
GCTGCTTCCTGCCCTCCCTCCTGTCCTACCCCCTGCGTGGTCGATGTGAA
TGCGGTAGATAACCACGGCTCCACTGCGCTTCACCTGGCCATCCGCGAGG
ACCCCCAGCAGGCCATTTCCCTCCACCCCTCCAACGCATCATCATCTTCT
TTCGACATAAGTGACACAGTCCGCGTATTGCTGTCATGGGGGGCGGACCC
CTTAATTCCTAACCTGGCCGGGGCTCTACCGGTAACGGCCGCGCAACGGT
TGCAGCACGCAAAGTGTCTTTCCCTCCTGACGGGATGGGAGCGCATGGCA
CTTGTTCACAAGGCGAGGTTATGCGTGACGGAGGCCAGGCAAATGGAAGC
GCATGTGGCGATGGAATTCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGC
AGAGGAATGAGTGGGGAGAGGTGAGGGAGGAGGAGACCTTGCCAGATGGA
TGGACAGCTGTCCCACGCCAGCAGCACCAACGCTCGTCTTCCAACTCTTT
TTCCTCCTTTTCCTCAATTTCGATGCGTGACCCGAAGGTGCGGATGGGTG
GGAAAGGAAGGAAAGGGAGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCA
TCTTTGTTTACTCTGGGTCTTCGGCAAAGCGAGAGCATCAGCATCAGCAT
CAGCAGCAGCAGCAGCAGCACTAGTAGCAGTAGCAGCAGTCCCAATGGCC
AAGCAATAAGCTTAAGCCTGAGTGGTAGCGGGGCGACCTTTTACTCTCTA
CCGTCTCTCCCCTCCATCCCAATCACCCTGCCCGTGCTGGAGAAACCCCA
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAG
ATGCGATGGGGGTGAGCGGTGCTGGGGGGCTTACCTGTGATGAGGGAGGG
AGGGAAGAAGGGAGGACTGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGG
GGAGCTGGGAATGCGGAAGGAGGCGATTGCGTATGTTGTTCATAAGATGA
ATTTTGACATGCTCTTAATGTTGCGGGAGACGTTTGGATAAGAAAGGAGG
GAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|94768

>mRNA_6445-protein ID=mRNA_6445-protein|Name=jgi.p|Nanoce1779_2|94768|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVSPHELSDLTPALVAQPIHTGPGPTYPQANNPQYPVNSQPSQLEARQAA
EARAALVEQMIEASKEGNVAVAHALLLQDPTLASCRDSVGQSPLMWAAYK
GYTALAVLLIQTNAPVDDHDCQSSRSALYMACEFGNWPVASLLLQHGANP
SFRRQLYGRTCLQIAAYNNHAHVVQGVLAFAASCPPSCPTPCVVDVNAVD
NHGSTALHLAIREDPQQAISLHPSNASSSSFDISDTVRVLLSWGADPLIP
NLAGALPVTAAQRLQHAKCLSLLTGWERMALVHKARLCVTEARQMEAHVA
MEFAALGRKEEKRQRNEWGEVREEETLPDGWTAVPRQQHQRSSSNSFSSF
SSISMRDPKVRMGGKGRKGREGGRDGPSKPSLFTLGLRQSESISISISSS
SSSTSSSSSSPNGQAISLSLSGSGATFYSLPSLPSIPITLPVLEKPHPPS
FPPSFPPYSVKGGDAMGVSGAGGLTCDEGGREEGRTGEQGVEGEGGGELG
MRKEAIAYVVHKMNFDMLLMLRETFG*
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mRNA from alignment at scaffold_15:664738..666449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6445 ID=mRNA_6445|Name=jgi.p|Nanoce1779_2|94768|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_15:664738..666449- (Nannochloropsis oceanica)
AGGCAGGCCCTCTCCATCCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCA
CCTCAACCCCATTTCTACCATCATTTACATCCCTTTCATCCAAAGGCCAC
TCCACAAGTTATGGTTTCTCCGCACGAGCTTTCGGACCTGACCCCAGCGC
TCGTCGCGCAACCCATTCATACTGGTCCAGGCCCCACCTACCCCCAAGCC
AATAACCCTCAGTATCCTGTCAATTCCCAGCCCTCGCAACTCGAAGCCCG
GCAGGCCGCAGAAGCCCGGGCAGCTCTGGTAGAGCAAATGATCGAGGCCA
GCAAGGAAGGGAATGTGGCTGTCGCGCATGCTCTCTTGCTCCAAGACCCT
ACCCTTGCCTCCTGCCGTGACAGCGTGGGACAGTCCCCCCTAATGTGGGC
CGCTTACAAAGGGTATACTGCCTTAGCCGTCCTCTTGATTCAAACCAACG
CCCCCGTGGACGACCACGACTGTCAATCCTCTCGCTCCGCCCTGTACATG
GCTTGCGAATTTGGGAACTGGCCTGTGGCCTCCTTGCTCCTCCAACACGG
CGCCAACCCTTCCTTCCGCCGTCAACTATACGGACGAACCTGCCTTCAAA
TCGCCGCCTACAATAACCATGCCCACGTCGTGCAGGGTGTCCTGGCTTTT
GCTGCTTCCTGCCCTCCCTCCTGTCCTACCCCCTGCGTGGTCGATGTGAA
TGCGGTAGATAACCACGGCTCCACTGCGCTTCACCTGGCCATCCGCGAGG
ACCCCCAGCAGGCCATTTCCCTCCACCCCTCCAACGCATCATCATCTTCT
TTCGACATAAGTGACACAGTCCGCGTATTGCTGTCATGGGGGGCGGACCC
CTTAATTCCTAACCTGGCCGGGGCTCTACCGGTAACGGCCGCGCAACGGT
TGCAGCACGCAAAGTGTCTTTCCCTCCTGACGGGATGGGAGCGCATGGCA
CTTGTTCACAAGGCGAGGTTATGCGTGACGGAGGCCAGGCAAATGGAAGC
GCATGTGGCGATGGAATTCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGC
AGAGGAATGAGTGGGGAGAGGTGAGGGAGGAGGAGACCTTGCCAGATGGA
TGGACAGCTGTCCCACGCCAGCAGCACCAACGCTCGTCTTCCAACTCTTT
TTCCTCCTTTTCCTCAATTTCGATGCGTGACCCGAAGGTGCGGATGGGTG
GGAAAGGAAGGAAAGGGAGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCA
TCTTTGTTTACTCTGGGTCTTCGGCAAAGCGAGAGCATCAGCATCAGCAT
CAGCAGCAGCAGCAGCAGCACTAGTAGCAGTAGCAGCAGTCCCAATGGCC
AAGCAATAAGCTTAAGCCTGAGTGGTAGCGGGGCGACCTTTTACTCTCTA
CCGTCTCTCCCCTCCATCCCAATCACCCTGCCCGTGCTGGAGAAACCCCA
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAG
ATGCGATGGGGGTGAGCGGTGCTGGGGGGCTTACCTGTGATGAGGGAGGG
AGGGAAGAAGGGAGGACTGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGG
GGAGCTGGGAATGCGGAAGGAGGCGATTGCGTATGTTGTTCATAAGATGA
ATTTTGACATGCTCTTAATGTTGCGGGAGACGTTTGGATAAGAAAGGAGG
GAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_15:664738..666449-

>mRNA_6445 ID=mRNA_6445|Name=jgi.p|Nanoce1779_2|94768|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_15:664738..666449- (Nannochloropsis oceanica)
ATGGTTTCTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCA
ACCCATTCATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTC
AGTATCCTGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCA
GAAGCCCGGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGG
GAATGTGGCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCT
CCTGCCGTGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAA
GGGTATACTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGA
CGACCACGACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAAT
TTGGGAACTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCT
TCCTTCCGCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTA
CAATAACCATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCT
GCCCTCCCTCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGAT
AACCACGGCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCA
GGCCATTTCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAA
GTGACACAGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCT
AACCTGGCCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGC
AAAGTGTCTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACA
AGGCGAGGTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCG
ATGGAATTCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGA
GTGGGGAGAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTG
TCCCACGCCAGCAGCACCAACGCTCGTCTTCCAACTCTTTTTCCTCCTTT
TCCTCAATTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAG
GAAAGGGAGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTA
CTCTGGGTCTTCGGCAAAGCGAGAGCATCAGCATCAGCATCAGCAGCAGC
AGCAGCAGCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAG
CTTAAGCCTGAGTGGTAGCGGGGCGACCTTTTACTCTCTACCGTCTCTCC
CCTCCATCCCAATCACCCTGCCCGTGCTGGAGAAACCCCACCCTCCCTCC
TTCCCTCCCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGG
GGTGAGCGGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAG
GGAGGACTGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGGAGCTGGGA
ATGCGGAAGGAGGCGATTGCGTATGTTGTTCATAAGATGAATTTTGACAT
GCTCTTAATGTTGCGGGAGACGTTTGGATAA
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Synonyms
Publications