jgi.p|Nanoce1779_2|650040, mRNA_6442 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|650040
Unique Name	mRNA_6442
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1764
Alignment location	scaffold_15:654066..655829 -

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Properties


Property Name	Value
TranscriptId	650126
Track	FilteredModels2
ProteinId	650040

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:654066..655829 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|650040	gene_6442	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6442	CDS_6442	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|650040	mRNA_6442-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:654066..655829-
coding sequence from alignment at scaffold_15:654066..655829-

mRNA sequence

>mRNA_6442 ID=mRNA_6442|Name=jgi.p|Nanoce1779_2|650040|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
GATGTTGGGAGGCAAGTGGGTGAGAGGAGGCGAAGCAGCGGTGAGCAGAA
GCAGACGGATAGTACGGGCATGCAGCTCAGACCGCTTGTCCCACTCTCCG
GAAGCACTGTTAAGACACAAACATGCACACTGCCTGTGTGCGTGCAGAAG
GTGGGCGGGCATGGTGCGGCCGTCCCGGGCGCTGAAGCAGATGAAGGCTC
GCCAAGAAGGAAACCTCAAGCGCAAAGCATTGTCTAATCCCCTCCCCGTC
TCCATAACTCCACACACGCGACAACATATAGCTCCTCCAGCTGCTGGCGC
AGGCCGGCACAGGCCCTGCCTGTTGTCTTTGCCAAAATGTGGAAACTATC
ATCACGACGCCATCGACCTCACGTCCGTCCGTCCCTCTTCCTCCTCCTCC
TCCTCTTCCTCCTCTTTCATGCCCTCGTAGCGCTGGGCCGATGCACCACA
CGAACGGCTTTCCTGCCCCTCCACCTCTCATCCTGCACGACGAGCACCTT
TCTCCCGCGTTCCCTCCACCTCTCCTCCACTTCTTTGCCCCCAGATGAGC
CCTCCCCTCCCCCCCTCCCCCGCGCAGTAATCATAATTCCTGGCTATGCG
TCCCCATCCTCCCTCTATAAGCGTCTTCAAGACTCCATCCGTGCTCGCGG
GCTACCCTGCTGGACCGTCCCTATTTCGGCTTCGATGTGGATACCCACGT
TCGGTGGGAGGAGCATCAGGCCCATCCTTGATCGGATCCACGAGACGGTC
CTGGACGTAGCGTTGCTCGGCCGTCCCCTGCCTGCGCCTCCTTTTGTACC
TCCCCACCCTATTCATTCTTCATCTCGTCGCTTTGAAAATGTGGATGAGC
TGGATAAATCTCCAGCCTCCCTTCAGGTTTCGTCTCCTCCTTCCCCACCT
CTGGAGGAAGGGGAGGCAGGGAAGGAGGGCACGCATCCCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCTTCGTCGGCCCCAAAGCCTTACACCTTGTTCC
ACTTCCTCCGCGAGCTATATAGCCCATCCCTGGGTGCTCAACCTCCCCCT
CCGTCCCTTTCTTCCCTCTCTGACCACCGACGCTACGACGTGGCCCTTGT
GGCCCATTCCGCAGGAGGGTGGGTGGGAAGAATCTATCTGTCCGATGCCT
CATACGACGGGCGGGTGTACTCAGGGAGTCGATATTGCTCGATGCTTATC
ACGTTGGGGTCACCCAACGTATTGCCGGAGAGGTTCAGAAAGATGGACAT
GAAGCACACGCCATATGCACTGAAGAACTTGAAGTTCGTGGACGAGAATT
GCAGGGAGGTAGGGGGGGAAGCAGAGGGCTTGCTTGACAGTGGAGATGTT
GGTGTTCTTAAGGAGAGGGGGAGGGAAGGAAGGAAGAAGGTGAAGATGGT
GTGTGTGGGCAGTAGGGCAGTGAGGGGGGGGAGGTTATGGGGGGGGCTGG
TGAGGGATTGGGCAGGGAGTAGCTACGGGCTATGCGGGTACGACGACGAG
TTGGAGGGAGGGGAGGGGGTAGGGGTGTGGGGGGATGGGATTACGCCGGT
GGAGAGCGCGTTAGGGCTGCCAGGGGCGGAGAAGGTGGAGCTGGAGGGAG
GGGTGCTTCATGGGCCGGAGGTGGAGGAGAGGGGAGGAATGTGGTATGGC
ACTGACCCGTGGCCGCTGGAGACATGGCTACCGTTTGTGCTTGGGACGGA
GGGAGGGACGGAGAGAGGGGCAGGAGGGAGGGGCGGGAGGGAGGGGGGGG
GGAGATGGATGTGA

protein sequence of jgi.p|Nanoce1779_2|650040

>mRNA_6442-protein ID=mRNA_6442-protein|Name=jgi.p|Nanoce1779_2|650040|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MWKLSSRRHRPHVRPSLFLLLLLFLLFHALVALGRCTTRTAFLPLHLSSC
TTSTFLPRSLHLSSTSLPPDEPSPPPLPRAVIIIPGYASPSSLYKRLQDS
IRARGLPCWTVPISASMWIPTFGGRSIRPILDRIHETVLDVALLGRPLPA
PPFVPPHPIHSSSRRFENVDELDKSPASLQVSSPPSPPLEEGEAGKEGTH
PSSSSSSSSSSSSAPKPYTLFHFLRELYSPSLGAQPPPPSLSSLSDHRRY
DVALVAHSAGGWVGRIYLSDASYDGRVYSGSRYCSMLITLGSPNVLPERF
RKMDMKHTPYALKNLKFVDENCREVGGEAEGLLDSGDVGVLKERGREGRK
KVKMVCVGSRAVRGGRLWGGLVRDWAGSSYGLCGYDDELEGGEGVGVWGD
GITPVESALGLPGAEKVELEGGVLHGPEVEERGGMWYGTDPWPLETWLPF
VLGTEGGTERGAGGRGGREGGGRWM*

mRNA from alignment at scaffold_15:654066..655829-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6442 ID=mRNA_6442|Name=jgi.p|Nanoce1779_2|650040|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at scaffold_15:654066..655829- (Nannochloropsis oceanica)
GATGTTGGGAGGCAAGTGGGTGAGAGGAGGCGAAGCAGCGGTGAGCAGAA
GCAGACGGATAGTACGGGCATGCAGCTCAGACCGCTTGTCCCACTCTCCG
GAAGCACTGTTAAGACACAAACATGCACACTGCCTGTGTGCGTGCAGAAG
GTGGGCGGGCATGGTGCGGCCGTCCCGGGCGCTGAAGCAGATGAAGGCTC
GCCAAGAAGGAAACCTCAAGCGCAAAGCATTGTCTAATCCCCTCCCCGTC
TCCATAACTCCACACACGCGACAACATATAGCTCCTCCAGCTGCTGGCGC
AGGCCGGCACAGGCCCTGCCTGTTGTCTTTGCCAAAATGTGGAAACTATC
ATCACGACGCCATCGACCTCACGTCCGTCCGTCCCTCTTCCTCCTCCTCC
TCCTCTTCCTCCTCTTTCATGCCCTCGTAGCGCTGGGCCGATGCACCACA
CGAACGGCTTTCCTGCCCCTCCACCTCTCATCCTGCACGACGAGCACCTT
TCTCCCGCGTTCCCTCCACCTCTCCTCCACTTCTTTGCCCCCAGATGAGC
CCTCCCCTCCCCCCCTCCCCCGCGCAGTAATCATAATTCCTGGCTATGCG
TCCCCATCCTCCCTCTATAAGCGTCTTCAAGACTCCATCCGTGCTCGCGG
GCTACCCTGCTGGACCGTCCCTATTTCGGCTTCGATGTGGATACCCACGT
TCGGTGGGAGGAGCATCAGGCCCATCCTTGATCGGATCCACGAGACGGTC
CTGGACGTAGCGTTGCTCGGCCGTCCCCTGCCTGCGCCTCCTTTTGTACC
TCCCCACCCTATTCATTCTTCATCTCGTCGCTTTGAAAATGTGGATGAGC
TGGATAAATCTCCAGCCTCCCTTCAGGTTTCGTCTCCTCCTTCCCCACCT
CTGGAGGAAGGGGAGGCAGGGAAGGAGGGCACGCATCCCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCTTCGTCGGCCCCAAAGCCTTACACCTTGTTCC
ACTTCCTCCGCGAGCTATATAGCCCATCCCTGGGTGCTCAACCTCCCCCT
CCGTCCCTTTCTTCCCTCTCTGACCACCGACGCTACGACGTGGCCCTTGT
GGCCCATTCCGCAGGAGGGTGGGTGGGAAGAATCTATCTGTCCGATGCCT
CATACGACGGGCGGGTGTACTCAGGGAGTCGATATTGCTCGATGCTTATC
ACGTTGGGGTCACCCAACGTATTGCCGGAGAGGTTCAGAAAGATGGACAT
GAAGCACACGCCATATGCACTGAAGAACTTGAAGTTCGTGGACGAGAATT
GCAGGGAGGTAGGGGGGGAAGCAGAGGGCTTGCTTGACAGTGGAGATGTT
GGTGTTCTTAAGGAGAGGGGGAGGGAAGGAAGGAAGAAGGTGAAGATGGT
GTGTGTGGGCAGTAGGGCAGTGAGGGGGGGGAGGTTATGGGGGGGGCTGG
TGAGGGATTGGGCAGGGAGTAGCTACGGGCTATGCGGGTACGACGACGAG
TTGGAGGGAGGGGAGGGGGTAGGGGTGTGGGGGGATGGGATTACGCCGGT
GGAGAGCGCGTTAGGGCTGCCAGGGGCGGAGAAGGTGGAGCTGGAGGGAG
GGGTGCTTCATGGGCCGGAGGTGGAGGAGAGGGGAGGAATGTGGTATGGC
ACTGACCCGTGGCCGCTGGAGACATGGCTACCGTTTGTGCTTGGGACGGA
GGGAGGGACGGAGAGAGGGGCAGGAGGGAGGGGCGGGAGGGAGGGGGGGG
GGAGATGGATGTGA

Coding sequence (CDS) from alignment at scaffold_15:654066..655829-

>mRNA_6442 ID=mRNA_6442|Name=jgi.p|Nanoce1779_2|650040|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_15:654066..655829- (Nannochloropsis oceanica)
ATGTGGAAACTATCATCACGACGCCATCGACCTCACGTCCGTCCGTCCCT
CTTCCTCCTCCTCCTCCTCTTCCTCCTCTTTCATGCCCTCGTAGCGCTGG
GCCGATGCACCACACGAACGGCTTTCCTGCCCCTCCACCTCTCATCCTGC
ACGACGAGCACCTTTCTCCCGCGTTCCCTCCACCTCTCCTCCACTTCTTT
GCCCCCAGATGAGCCCTCCCCTCCCCCCCTCCCCCGCGCAGTAATCATAA
TTCCTGGCTATGCGTCCCCATCCTCCCTCTATAAGCGTCTTCAAGACTCC
ATCCGTGCTCGCGGGCTACCCTGCTGGACCGTCCCTATTTCGGCTTCGAT
GTGGATACCCACGTTCGGTGGGAGGAGCATCAGGCCCATCCTTGATCGGA
TCCACGAGACGGTCCTGGACGTAGCGTTGCTCGGCCGTCCCCTGCCTGCG
CCTCCTTTTGTACCTCCCCACCCTATTCATTCTTCATCTCGTCGCTTTGA
AAATGTGGATGAGCTGGATAAATCTCCAGCCTCCCTTCAGGTTTCGTCTC
CTCCTTCCCCACCTCTGGAGGAAGGGGAGGCAGGGAAGGAGGGCACGCAT
CCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCGTCGGCCCCAAAGCC
TTACACCTTGTTCCACTTCCTCCGCGAGCTATATAGCCCATCCCTGGGTG
CTCAACCTCCCCCTCCGTCCCTTTCTTCCCTCTCTGACCACCGACGCTAC
GACGTGGCCCTTGTGGCCCATTCCGCAGGAGGGTGGGTGGGAAGAATCTA
TCTGTCCGATGCCTCATACGACGGGCGGGTGTACTCAGGGAGTCGATATT
GCTCGATGCTTATCACGTTGGGGTCACCCAACGTATTGCCGGAGAGGTTC
AGAAAGATGGACATGAAGCACACGCCATATGCACTGAAGAACTTGAAGTT
CGTGGACGAGAATTGCAGGGAGGTAGGGGGGGAAGCAGAGGGCTTGCTTG
ACAGTGGAGATGTTGGTGTTCTTAAGGAGAGGGGGAGGGAAGGAAGGAAG
AAGGTGAAGATGGTGTGTGTGGGCAGTAGGGCAGTGAGGGGGGGGAGGTT
ATGGGGGGGGCTGGTGAGGGATTGGGCAGGGAGTAGCTACGGGCTATGCG
GGTACGACGACGAGTTGGAGGGAGGGGAGGGGGTAGGGGTGTGGGGGGAT
GGGATTACGCCGGTGGAGAGCGCGTTAGGGCTGCCAGGGGCGGAGAAGGT
GGAGCTGGAGGGAGGGGTGCTTCATGGGCCGGAGGTGGAGGAGAGGGGAG
GAATGTGGTATGGCACTGACCCGTGGCCGCTGGAGACATGGCTACCGTTT
GTGCTTGGGACGGAGGGAGGGACGGAGAGAGGGGCAGGAGGGAGGGGCGG
GAGGGAGGGGGGGGGGAGATGGATGTGA

Synonyms

Publications