jgi.p|Nanoce1779_2|595054, mRNA_6441 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595054
Unique Name	mRNA_6441
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1417
Alignment location	scaffold_15:651792..653730 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595140
Track	FilteredModels2
ProteinId	595054

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:651792..653730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595054	gene_6441	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595054	mRNA_6441-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6441	CDS_6441	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:651792..653730+
coding sequence from alignment at scaffold_15:651792..653730+

mRNA sequence

>mRNA_6441 ID=mRNA_6441|Name=jgi.p|Nanoce1779_2|595054|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
AGCGCTCTTCCCCGTACATATAAACCAGGACCCGACAAAAACCATGCGAT
CCTTGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAAC
GAGAGACTTATTGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACTGA
TGAATGCCCGGTCTTTTTCAACACTGATCCCGACTTCAATACGATTGTGG
GCTCCGAAAACTTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCACC
TTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGCTTCTA
CAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCATGC
CTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAAAC
CGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCT
CAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGGGCTCGGGGCAAG
GCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCATC
CAGAAGGTGAACTTCCAGTACGCCTCCGACCGGTGCACTACCGAGCTCGT
CTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCCTA
CCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTGAC
AACTTTAACCCTGTTGAGACTTATGGAGCCCAGAACCTGAAGGTTCCCAA
AAGCTGTGGCACATGCACGCCTGGTGTAAACTGCAAGGGCGACAATAAGG
TCAGGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGAAAGTAATCCTTT
TTCGGTAGTTATTGGATTCACTTCTTACAAGAAATGAAGGGAGGGGGATG
GACCAGCCGCATGGCCTGTGTCAGGGAAATCAGTCATGGTCAAGGCGGCG
TCAGTACGTGTCACTACGTGTCACGTGTAGTATGAGTAGTAGAGTAATTT
ATCAATGATCAAGTGTGAAATAAGGAGTGGGTCAGCCACGCGTGTTTTTG
TGCGACTTGTAAGAATAGCGGTAGGAAGCGAGAGAGACATAAGTGGAAGA
AGGAAGGAGGAAACGGAGGTGGTATAAGGGAGGCGTGCCGATGCAGGTAG
GATGAAGCGTTCCCTCCCTGCTATATTGCACTGGGGAAGACAAGGCGATG
TATTCATGTGCAGCACAGTTCTAGGAGGAGGGAAAGATAAAAAGAATGAC
TCGGTTGAGTCCTGGAAAGTGATGGGATGGGACAAGCGCGCAGGTTTCTC
GTTTGCAGTCGCCCAGAGGGGGGAAAAATAAAGATTCAAATATACTATAC
TACTAGAGGAGTATGTGATGATATAGTGACCGTTGATCGACGAGAGAAGC
TGCTACGATAGTCTTGA

protein sequence of jgi.p|Nanoce1779_2|595054

>mRNA_6441-protein ID=mRNA_6441-protein|Name=jgi.p|Nanoce1779_2|595054|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRSLSALLGLAGLATVVGNERLIDTMQFRAAPNRTDECPVFFNTDPDFNT
IVGSENFGSLLDSVSYSVTFPKMRWGRKTWIQLRFYSNVQDLPFENVKFC
IMPYSNTPDDDKYAPEFQNRVKYAPRIRGPQPLIELNSNVSLPYVNATGS
GQGFDTVCVTVPSVKAKGIQKVNFQYASDRCTTELVWKGWVEFDNPFYSL
YPTTAPQRCFANQNPSGPDNFNPVETYGAQNLKVPKSCGTCTPGVNCKGD
NKVREPKAKKNKTT*

mRNA from alignment at scaffold_15:651792..653730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6441 ID=mRNA_6441|Name=jgi.p|Nanoce1779_2|595054|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp|location=Sequence derived from alignment at scaffold_15:651792..653730+ (Nannochloropsis oceanica)
AGCGCTCTTCCCCGTACATATAAACCAGGACCCGACAAAAACCATGCGAT
CCTTGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAAC
GAGAGACTTATTGGTACGTGCACAAGACTGTGTAATCACGTTTTGTCTGG
ATATATAAACCATTTTGCCCGTCAACGATATCCATCCTCTCCTTCCTGTC
CATCCCTCCCGCCCTCCCTTCTCTCCTCCCCCAAACCCCTCCCACGAATC
TAGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACTGATGAATGCCCG
GTCTTTTTCAACACTGATCCCGACTTCAATACGGTAAGTATGTACGCTCT
TTAGCTCCCCCCCCCGCATACTACACGGCCTCCCCATCCTACTCCCCCCC
CCCCTCATGAGAGCATATGTCCCTCCTTCCGACACCATTTCCTCCTCATC
CTTCCCCCACTTTCTTACTCTCGCAGATTGTGGGCTCCGAAAACTTCGGC
TCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAAGATGAGGTG
GGGTCGCAAAACGTGGATCCAGCTCCGCTTCTACAGCAACGTCCAGGACT
TGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCCAACACGCCG
GACGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAAGTACGCCCC
TCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCAACGTGAGCT
TACCGTACGTGAACGCCACGGGCTCGGGGCAAGGCTTCGACACAGTGTGT
GTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAAGGTGAACTTCCA
GTACGCCTCCGACCGGTGCACTACCGAGCTCGTCTGGAAGGGATGGGTGG
AGTTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCGCCTCAGCGT
TGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAACCCTGTTGA
GACTTATGGAGTGAGTAGTTTTGTATCTCTCTCTCCCTCTCTCCCTCTTT
CCTCCTCCTTTTCGCTTGTGCTCACCATGATTGCGGCTTCTCCCTCCCTC
CCTCCCTCCCCCTCCTCCCAACCTTTTCTCCATCATTGTACGGAGGGGGG
GAAACGAGGATGAAATCCCCCTTCCCATTCTTGTCCAACTGTTCAAACAT
CTCGTTTCCCTTTCCCTCTCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGG
CCCAGAACCTGAAGGTTCCCAAAAGCTGTGGCACATGCACGCCTGGTGTA
AACTGCAAGGGCGACAATAAGGTCAGGGAGCCCAAGGCTAAGAAGAACAA
AACCACGTGAAAGTAATCCTTTTTCGGTAGTTATTGGATTCACTTCTTAC
AAGAAATGAAGGGAGGGGGATGGACCAGCCGCATGGCCTGTGTCAGGGAA
ATCAGTCATGGTCAAGGCGGCGTCAGTACGTGTCACTACGTGTCACGTGT
AGTATGAGTAGTAGAGTAATTTATCAATGATCAAGTGTGAAATAAGGAGT
GGGTCAGCCACGCGTGTTTTTGTGCGACTTGTAAGAATAGCGGTAGGAAG
CGAGAGAGACATAAGTGGAAGAAGGAAGGAGGAAACGGAGGTGGTATAAG
GGAGGCGTGCCGATGCAGGTAGGATGAAGCGTTCCCTCCCTGCTATATTG
CACTGGGGAAGACAAGGCGATGTATTCATGTGCAGCACAGTTCTAGGAGG
AGGGAAAGATAAAAAGAATGACTCGGTTGAGTCCTGGAAAGTGATGGGAT
GGGACAAGCGCGCAGGTTTCTCGTTTGCAGTCGCCCAGAGGGGGGAAAAA
TAAAGATTCAAATATACTATACTACTAGAGGAGTATGTGATGATATAGTG
ACCGTTGATCGACGAGAGAAGCTGCTACGATAGTCTTGA

Coding sequence (CDS) from alignment at scaffold_15:651792..653730+

>mRNA_6441 ID=mRNA_6441|Name=jgi.p|Nanoce1779_2|595054|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_15:651792..653730+ (Nannochloropsis oceanica)
ATGCGATCCTTGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGT
TGGCAACGAGAGACTTATTGACACCATGCAGTTCCGCGCTGCGCCTAATC
GCACTGATGAATGCCCGGTCTTTTTCAACACTGATCCCGACTTCAATACG
ATTGTGGGCTCCGAAAACTTCGGCTCGCTCCTCGACTCTGTCTCTTACTC
GGTCACCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCC
GCTTCTACAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGC
ATCATGCCTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGAGTT
CCAAAACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGA
TTGAGCTCAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGGGCTCG
GGGCAAGGCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAA
GGGCATCCAGAAGGTGAACTTCCAGTACGCCTCCGACCGGTGCACTACCG
AGCTCGTCTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCCCTC
TACCCTACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGG
CCCTGACAACTTTAACCCTGTTGAGACTTATGGAGCCCAGAACCTGAAGG
TTCCCAAAAGCTGTGGCACATGCACGCCTGGTGTAAACTGCAAGGGCGAC
AATAAGGTCAGGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGAATGCG
ATCCTTGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCA
ACGAGAGACTTATTGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACT
GATGAATGCCCGGTCTTTTTCAACACTGATCCCGACTTCAATACGATTGT
GGGCTCCGAAAACTTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCA
CCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGCTTC
TACAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCAT
GCCTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAA
ACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAG
CTCAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGGGCTCGGGGCA
AGGCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCA
TCCAGAAGGTGAACTTCCAGTACGCCTCCGACCGGTGCACTACCGAGCTC
GTCTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCC
TACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTG
ACAACTTTAACCCTGTTGAGACTTATGGAGCCCAGAACCTGAAGGTTCCC
AAAAGCTGTGGCACATGCACGCCTGGTGTAAACTGCAAGGGCGACAATAA
GGTCAGGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGAATGCGATCCT
TGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAACGAG
AGACTTATTGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACTGATGA
ATGCCCGGTCTTTTTCAACACTGATCCCGACTTCAATACGATTGTGGGCT
CCGAAAACTTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTC
CCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGCTTCTACAG
CAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTT
ACTCCAACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAAACCGG
GTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAA
CAGCAACGTGAGCTTACCGTACGTGAACGCCACGGGCTCGGGGCAAGGCT
TCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAG
AAGGTGAACTTCCAGTACGCCTCCGACCGGTGCACTACCGAGCTCGTCTG
GAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCCTACCA
CCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAAC
TTTAACCCTGTTGAGACTTATGGAGCCCAGAACCTGAAGGTTCCCAAAAG
CTGTGGCACATGCACGCCTGGTGTAAACTGCAAGGGCGACAATAAGGTCA
GGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGAATGCGATCCTTGAGT
GCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAACGAGAGACT
TATTGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACTGATGAATGCC
CGGTCTTTTTCAACACTGATCCCGACTTCAATACGATTGTGGGCTCCGAA
AACTTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAA
GATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGCTTCTACAGCAACG
TCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCC
AACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAA
GTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCA
ACGTGAGCTTACCGTACGTGAACGCCACGGGCTCGGGGCAAGGCTTCGAC
ACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAAGGT
GAACTTCCAGTACGCCTCCGACCGGTGCACTACCGAGCTCGTCTGGAAGG
GATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCG
CCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAA
CCCTGTTGAGACTTATGGAGCCCAGAACCTGAAGGTTCCCAAAAGCTGTG
GCACATGCACGCCTGGTGTAAACTGCAAGGGCGACAATAAGGTCAGGGAG
CCCAAGGCTAAGAAGAACAAAACCACGTGA

Synonyms

Publications