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Properties
| Property Name | Value |
|---|
| TranscriptId | 595137 |
| Track | FilteredModels2 |
| ProteinId | 595051 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:649517..652308 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6440 ID=mRNA_6440|Name=jgi.p|Nanoce1779_2|595051|organism=Nannochloropsis oceanica|type=mRNA|length=2083bp
ATCACCATGCGATCCTTGACTGCCCTCGTGGGCCTGGCCAGCCTTGCTAC
CGCGCTCGGCAACGGGTATAGAACCAATGGTACGTGTGCGAGAGTCTGTG
CATGCTCCGCAGCGGCCTTTGATCACTCGGTCGCCAATTACGTTCGTCCT
CTTCTTTCCTCCCTTCCTCCCTCCTTCACTCTCCCCTTTTCCCTCCTGTA
CACAGACAACCTGCAGTCCCGCCCCGGGCCCAACCGTACTGATGAGTGCC
CATTCTATTTCAACACTAGCCCCAGTTCCAATACGGCCGTGGGCTCCCCT
CAATTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAA
GATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGTTTCTTCAGCAACG
TCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCC
AACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAA
GTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCA
ACGTGAGCTTACCGTACGTGAACGCCACGAGCTCGGGGCAAGGCTTCGAC
ACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAGGGT
GAACTTCCAGTACGCTTCCGACCGGTGCACCGTCTTGCTCAAGTGGAAGG
GATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCG
CCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAA
CCCTGTTAAGACCTACGAGGCCGAGAACTTGAATATACCCCAGAGCTGTG
GGACCTGTACACCTGGTCGGAACTGCAAGGGCGACAATAAGGTCAAGGAG
CCTAAGACCAAGAAGAACAAAACCACGTAATCCTTGATTATTTCACCATG
AGGGATGGACCGGCTACAGGCACCTTTGTCAGGAAAATTAGTCATGGGCA
AGGTTGCGTCAGTACGTATCATTGTGTGTCACGTCTTGTTCGAGTAGTAA
GAAAAAATATTTTTATTGTTGGAGGGAGATGAATTGTTGTGGAGGAAAGA
AAGAGGTTGAGAGTAGAGAAGGGGGTGTATGTGTGTGAAGAAAAGAAGTG
TTATCATGGTGGCCTGGGCAAAAAAAGGATAAAGCATAGGATTGGACATC
ACAAAACACCACAAGCACTGCAAGTACATACATGCACAGACAGACCCCGC
CCACCCTGCATATAAAGCCTGCTTTGCCTTGGCCAACCTCCTGCCTCTGT
CTCTTGCAGAAACTTGACAGCTTAACGGCCCATTAGCAGTTGGAACAAGA
CCAAGCGCCCTCTCCTCTCCCAAGCCTGCGAGTCGAGAAGAAGATTCACC
CAAGGGTGTTTGGCCCTCTCTCTCCGCACCCGCTGTCTATCTCGTCCTCC
GAACGTGCTTCTTTGCATGGGGCTTGGTAATGCACGCGGTGGTGATGCGG
GTGGATGGCCATTGGTTGGACCAAGGCATGGCATTGCAGGCAGACAATGG
GCCCGGCGAGGGTCTGTCATTTTTCTTTCGTTTGGTTTATTCCATGCATG
TTTCACGCGTACTCGTGCACTGAATCTCAGCCTTTCTTGCATGTTCGTAT
GTCTTAGTGTCAGGCCGTCCTTCTATCTCCACTTGGATGGACCTGGTCCT
CCTTTCACACGCATTTCCCATACACTCATTTTGCACCGTTTATACCCAGG
CCTGAACTGACCATACCGCACAAACAATCATATATACCTAAACCATGCTT
TTGTCCTTGTACGATGCCATCATGAAATTCACACATACCAGTTTCCTGTA
GCGCTCTTCCCCGTACATATAAACCAGGACCCGACAAAAACCATGCGATC
CTTGAGTGCTCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAACG
AGAGACTTATTGACACCATGCAGTTCCGCGCTGCGCCTAATCGCACTGAT
GAATGCCCGGTCTTTTTCAACACTGATCCCGACTTCAATACGATTGTGGG
CTCCGAAAACTTCGGCTCGCTCCTCGACTCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|595051 >mRNA_6440-protein ID=mRNA_6440-protein|Name=jgi.p|Nanoce1779_2|595051|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MRSLTALVGLASLATALGNGYRTNGTCARVCACSAAAFDHSVANYVRPLL
SSLPPSFTLPFSLLYTDNLQSRPGPNRTDECPFYFNTSPSSNTAVGSPQF
GSLLDSVSYSVTFPKMRWGRKTWIQLRFFSNVQDLPFENVKFCIMPYSNT
PDDDKYAPEFQNRVKYAPRIRGPQPLIELNSNVSLPYVNATSSGQGFDTV
CVTVPSVKAKGIQRVNFQYASDRCTVLLKWKGWVEFDNPFYSLYPTTAPQ
RCFANQNPSGPDNFNPVKTYEAENLNIPQSCGTCTPGRNCKGDNKVKEPK
TKKNKTT* back to topmRNA from alignment at scaffold_15:649517..652308+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6440 ID=mRNA_6440|Name=jgi.p|Nanoce1779_2|595051|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at scaffold_15:649517..652308+ (Nannochloropsis oceanica)
ATCACCATGCGATCCTTGACTGCCCTCGTGGGCCTGGCCAGCCTTGCTAC
CGCGCTCGGCAACGGGTATAGAACCAATGGTACGTGTGCGAGAGTCTGTG
CATGCTCCGCAGCGGCCTTTGATCACTCGGTCGCCAATTACGTTCGTCCT
CTTCTTTCCTCCCTTCCTCCCTCCTTCACTCTCCCCTTTTCCCTCCTGTA
CACAGACAACCTGCAGTCCCGCCCCGGGCCCAACCGTACTGATGAGTGCC
CATTCTATTTCAACACTAGCCCCAGTTCCAATACGGTAAGTTTGTACGCT
TATATATGTCGTTCCAACCATTTTTTCCTCCTCTCTCTGGTATACCGTTT
TGGCCTCCCACTCTGCTTTTTTAATCCAACTCGAGAGCATATGTCCCTTC
TAATCATCGCTTTGTGGTCTCTCCCTCACTTTCTTACTCTCGCAGGCCGT
GGGCTCCCCTCAATTCGGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCA
CCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGCTCCGTTTC
TTCAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTCTGCATCAT
GCCTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGAGTTCCAAA
ACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAG
CTCAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGAGCTCGGGGCA
AGGCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCA
TCCAGAGGGTGAACTTCCAGTACGCTTCCGACCGGTGCACCGTCTTGCTC
AAGTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCCCTCTACCC
TACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTG
ACAACTTTAACCCTGTTAAGACCTACGAGGTTCGTCTTGTTTGTATCTCT
CTCTCCCTCTCTCCCTCTTTCCTCCTCCTTTTTCAGCTTGTGCTTATCAT
GATTGCGGCTTGTCCCTCCTTCCCTCCCTTCTTTCCTTCTTCCTCGCCAT
CATTGTACGGAGGGGGGGACTGATTTTCCCCTTCCCTTTCTTGTCCAGCT
GTTGAAATATCTCATTCCTTTCGTCTTTCCCCTTCCCCCTCCCCTTCCTC
CCTCCCTCCCTCTTAACCCCTCCCACCCCTCCACCCCTCCTCCAGGCCGA
GAACTTGAATATACCCCAGAGCTGTGGGACCTGTACACCTGGTCGGAACT
GCAAGGGCGACAATAAGGTCAAGGAGCCTAAGACCAAGAAGAACAAAACC
ACGTAATCCTTGATTATTTCACCATGAGGGATGGACCGGCTACAGGCACC
TTTGTCAGGAAAATTAGTCATGGGCAAGGTTGCGTCAGTACGTATCATTG
TGTGTCACGTCTTGTTCGAGTAGTAAGAAAAAATATTTTTATTGTTGGAG
GGAGATGAATTGTTGTGGAGGAAAGAAAGAGGTTGAGAGTAGAGAAGGGG
GTGTATGTGTGTGAAGAAAAGAAGTGTTATCATGGTGGCCTGGGCAAAAA
AAGGATAAAGCATAGGATTGGACATCACAAAACACCACAAGCACTGCAAG
TACATACATGCACAGACAGACCCCGCCCACCCTGCATATAAAGCCTGCTT
TGCCTTGGCCAACCTCCTGCCTCTGTCTCTTGCAGAAACTTGACAGCTTA
ACGGCCCATTAGCAGTTGGAACAAGACCAAGCGCCCTCTCCTCTCCCAAG
CCTGCGAGTCGAGAAGAAGATTCACCCAAGGGTGTTTGGCCCTCTCTCTC
CGCACCCGCTGTCTATCTCGTCCTCCGAACGTGCTTCTTTGCATGGGGCT
TGGTAATGCACGCGGTGGTGATGCGGGTGGATGGCCATTGGTTGGACCAA
GGCATGGCATTGCAGGCAGACAATGGGCCCGGCGAGGGTCTGTCATTTTT
CTTTCGTTTGGTTTATTCCATGCATGTTTCACGCGTACTCGTGCACTGAA
TCTCAGCCTTTCTTGCATGTTCGTATGTCTTAGTGTCAGGCCGTCCTTCT
ATCTCCACTTGGATGGACCTGGTCCTCCTTTCACACGCATTTCCCATACA
CTCATTTTGCACCGTTTATACCCAGGCCTGAACTGACCATACCGCACAAA
CAATCATATATACCTAAACCATGCTTTTGTCCTTGTACGATGCCATCATG
AAATTCACACATACCAGTTTCCTGTAGCGCTCTTCCCCGTACATATAAAC
CAGGACCCGACAAAAACCATGCGATCCTTGAGTGCTCTTCTTGGCCTAGC
CGGCCTTGCCACCGTGGTTGGCAACGAGAGACTTATTGGTACGTGCACAA
GACTGTGTAATCACGTTTTGTCTGGATATATAAACCATTTTGCCCGTCAA
CGATATCCATCCTCTCCTTCCTGTCCATCCCTCCCGCCCTCCCTTCTCTC
CTCCCCCAAACCCCTCCCACGAATCTAGACACCATGCAGTTCCGCGCTGC
GCCTAATCGCACTGATGAATGCCCGGTCTTTTTCAACACTGATCCCGACT
TCAATACGGTAAGTATGTACGCTCTTTAGCTCCCCCCCCCGCATACTACA
CGGCCTCCCCATCCTACTCCCCCCCCCCCTCATGAGAGCATATGTCCCTC
CTTCCGACACCATTTCCTCCTCATCCTTCCCCCACTTTCTTACTCTCGCA
GATTGTGGGCTCCGAAAACTTCGGCTCGCTCCTCGACTCTGT back to topCoding sequence (CDS) from alignment at scaffold_15:649517..652308+ >mRNA_6440 ID=mRNA_6440|Name=jgi.p|Nanoce1779_2|595051|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_15:649517..652308+ (Nannochloropsis oceanica)
ATGCGATCCTTGACTGCCCTCGTGGGCCTGGCCAGCCTTGCTACCGCGCT
CGGCAACGGGTATAGAACCAATGGTACGTGTGCGAGAGTCTGTGCATGCT
CCGCAGCGGCCTTTGATCACTCGGTCGCCAATTACGTTCGTCCTCTTCTT
TCCTCCCTTCCTCCCTCCTTCACTCTCCCCTTTTCCCTCCTGTACACAGA
CAACCTGCAGTCCCGCCCCGGGCCCAACCGTACTGATGAGTGCCCATTCT
ATTTCAACACTAGCCCCAGTTCCAATACGGCCGTGGGCTCCCCTCAATTC
GGCTCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAAGATGAG
GTGGGGTCGCAAAACGTGGATCCAGCTCCGTTTCTTCAGCAACGTCCAGG
ACTTGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCCAACACG
CCGGACGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAAGTACGC
CCCTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCAACGTGA
GCTTACCGTACGTGAACGCCACGAGCTCGGGGCAAGGCTTCGACACAGTG
TGTGTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAGGGTGAACTT
CCAGTACGCTTCCGACCGGTGCACCGTCTTGCTCAAGTGGAAGGGATGGG
TGGAGTTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCGCCTCAG
CGTTGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAACCCTGT
TAAGACCTACGAGGCCGAGAACTTGAATATACCCCAGAGCTGTGGGACCT
GTACACCTGGTCGGAACTGCAAGGGCGACAATAAGGTCAAGGAGCCTAAG
ACCAAGAAGAACAAAACCACGTAAATGCGATCCTTGACTGCCCTCGTGGG
CCTGGCCAGCCTTGCTACCGCGCTCGGCAACGGGTATAGAACCAATGGTA
CGTGTGCGAGAGTCTGTGCATGCTCCGCAGCGGCCTTTGATCACTCGGTC
GCCAATTACGTTCGTCCTCTTCTTTCCTCCCTTCCTCCCTCCTTCACTCT
CCCCTTTTCCCTCCTGTACACAGACAACCTGCAGTCCCGCCCCGGGCCCA
ACCGTACTGATGAGTGCCCATTCTATTTCAACACTAGCCCCAGTTCCAAT
ACGGCCGTGGGCTCCCCTCAATTCGGCTCGCTCCTCGACTCTGTCTCTTA
CTCGGTCACCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGC
TCCGTTTCTTCAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTC
TGCATCATGCCTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGA
GTTCCAAAACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCC
TGATTGAGCTCAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGAGC
TCGGGGCAAGGCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGC
GAAGGGCATCCAGAGGGTGAACTTCCAGTACGCTTCCGACCGGTGCACCG
TCTTGCTCAAGTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCC
CTCTACCCTACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTC
GGGCCCTGACAACTTTAACCCTGTTAAGACCTACGAGGCCGAGAACTTGA
ATATACCCCAGAGCTGTGGGACCTGTACACCTGGTCGGAACTGCAAGGGC
GACAATAAGGTCAAGGAGCCTAAGACCAAGAAGAACAAAACCACGTAAAT
GCGATCCTTGACTGCCCTCGTGGGCCTGGCCAGCCTTGCTACCGCGCTCG
GCAACGGGTATAGAACCAATGGTACGTGTGCGAGAGTCTGTGCATGCTCC
GCAGCGGCCTTTGATCACTCGGTCGCCAATTACGTTCGTCCTCTTCTTTC
CTCCCTTCCTCCCTCCTTCACTCTCCCCTTTTCCCTCCTGTACACAGACA
ACCTGCAGTCCCGCCCCGGGCCCAACCGTACTGATGAGTGCCCATTCTAT
TTCAACACTAGCCCCAGTTCCAATACGGCCGTGGGCTCCCCTCAATTCGG
CTCGCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAAGATGAGGT
GGGGTCGCAAAACGTGGATCCAGCTCCGTTTCTTCAGCAACGTCCAGGAC
TTGCCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCCAACACGCC
GGACGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAAGTACGCCC
CTCGCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCAACGTGAGC
TTACCGTACGTGAACGCCACGAGCTCGGGGCAAGGCTTCGACACAGTGTG
TGTAACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAGGGTGAACTTCC
AGTACGCTTCCGACCGGTGCACCGTCTTGCTCAAGTGGAAGGGATGGGTG
GAGTTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCGCCTCAGCG
TTGCTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAACCCTGTTA
AGACCTACGAGGCCGAGAACTTGAATATACCCCAGAGCTGTGGGACCTGT
ACACCTGGTCGGAACTGCAAGGGCGACAATAAGGTCAAGGAGCCTAAGAC
CAAGAAGAACAAAACCACGTAA back to top
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