jgi.p|Nanoce1779_2|573630, mRNA_644 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573630
Unique Name	mRNA_644
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1932
Alignment location	scaffold_2:85491..87422 -

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Properties


Property Name	Value
TranscriptId	573716
Track	FilteredModels2
ProteinId	573630

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:85491..87422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573630	gene_644	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573630	mRNA_644-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_644	CDS_644	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:85491..87422-
coding sequence from alignment at scaffold_2:85491..87422-

mRNA sequence

>mRNA_644 ID=mRNA_644|Name=jgi.p|Nanoce1779_2|573630|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
GGCGGCTGCTGCAATGGCAGAGCTTGCGGCCGGGTATCGACGGGATGCGG
ATGAAGACGAGGAGGAGGACGAGGAGGAGGACGAGACGTCGTCGATGGAC
TCGCGCAAGGGAAATGTGGACGAGGAGGACCCCCCTCCTCTAAAGGGTGG
GGGAAGTAGCAGAACCAAGGCAGCTGTTGCTGCCGCGGCCGCGATGGCAG
AAATGGCTCTGAGGCCCAAGAGCAGCAGCAGCAGCAGCAATAGCAATAGC
GGCAAGAGTGACGCGTCGAGTGGCAACAAGCCCTCGCCCAATTTAATCGC
CGTTGCCTCCTCCTCCACTGCCCTCTCCTCCTATTCCTCTTCCCACCGGC
TCCCCCGCAATGAAACCACACCCAACCACCCCTCCTCCACCAGCAACCCG
AAAAAACAGCGCCTCTCCAGCATCTCCGGCATCGGCCTTGGGGGCAAGTC
AACGGTTTTCATCCCCACCGCGGGCGGTCGCACCCTCACCCGTGACGTGT
GGCAGCTTGCCCAAGTCCCTTGCGCTTTGGGAGGGAGACAGGAGGGGGGG
GAGGACAAGTCGGATCCCTCGACCTCATCCTTGTCGGGAGGGCAGGAAGG
GCCGACTGGAAGTCAGACGTTCACTTCCCGGGAGCCTGGCTCCAGCACGA
ATAGTAACATTGCACAGTTTTTGCCGATGGGCCACCCCGCGTCGAACGAA
TTCACCTACCAGATTTCGAATGTGGAGTTTGTAACACGGGCGGGCGGGGT
GGTTTTGGGAGATATCAACGGGGTGGTGACGTTGGATGGCCAGGGAGTGG
CGGAGACGAGTCTTAATGTGCATGGCTCCGAGCCAGAGTGCGTTTGGGCG
ATTCGATTCCACTCGATGGGGGCGGAGGAGAGGGAGGAACGGAAGGCGGG
AGGGAAGAGCAATCAAAAGAAACTGGCGGGGTTGGGGTTGGAAGGGATTG
ACAGAAAGAATGAGGGAGCGGCGATTGCGATGACGATGTTGACGCATACC
TCACCCTCTGCCTCCTCCTCGGCCTCCTCCTCGTCCTCTTCATCCTCCTC
TTCTGCTTCCTCCTCCTTGGGCTTTATCCCGTCCTCTCACATTGCTAAGA
AGGTCAAGAACCGCGGCAAGTCTACCAGCGACGATAACATGAGCAGCAGC
AGTCACGACCGCACGGGCAGCAGTGGCAGCAGTGGAAGCGGAGACGGAAG
TGTTTCATCCTCTGACGAGCCAGGTACATCTGAAATACCCCACGGGTCGG
CCAAGATGATGGTAACCACCTTTAGGAGGAGGAGCAGCAGCAGCAGCAGC
AGCAGTAGTAGAGAAGGGGGAGAGGGAGACGACTGGGAAAAGTCCTCGGA
GGCGTCGATGGAGGTGGAAGTCGAGTGATCAGTGATCAAGTGTCTTGCAA
TGTCGATTTGATACTTGATACTTGAATTTGCTTGCTTTATAGACATATGC
AAGGAAGAGGGAGACGGGAGGGATAAAAGGCGAAGACAAAGTATTCTCTT
GGAAATAAAAGAGAAGGTGCCTTTGTAAAATAGAATAGACGAGGATGCGA
AAGAGGGAAGGAGGAACGGAGAGAATGAGCAACATCATAATCTATTCGAT
TTTTTTTAGATAGTTTATTTAAATGTGTACATAAGGAAACGAGAAAGACG
AGAGAACGTTTTCATGGGTGCGTCGCCAGAGAGTGAATGCGACGCTTAAC
TGCGAATCAGACGAAGGATGGAAGAGGAGCAATTATAACCAGGACTAGAA
AAAGATAAATATTAGGGGGAAGGAGAGATTGAGGAAAGGGCCATTTATCA
TTTATAGAGCGATACAAATATATAGATAGAAGACTTAGACAAGTCGCGGA
AAAATGACATGAGGAAATCCCGACCAAACTTCCTCCAACCGGCGCACAGC
AATCCAACACGAAGAAAATTAGATTTTAAGAA

protein sequence of jgi.p|Nanoce1779_2|573630

>mRNA_644-protein ID=mRNA_644-protein|Name=jgi.p|Nanoce1779_2|573630|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MAELAAGYRRDADEDEEEDEEEDETSSMDSRKGNVDEEDPPPLKGGGSSR
TKAAVAAAAAMAEMALRPKSSSSSSNSNSGKSDASSGNKPSPNLIAVASS
STALSSYSSSHRLPRNETTPNHPSSTSNPKKQRLSSISGIGLGGKSTVFI
PTAGGRTLTRDVWQLAQVPCALGGRQEGGEDKSDPSTSSLSGGQEGPTGS
QTFTSREPGSSTNSNIAQFLPMGHPASNEFTYQISNVEFVTRAGGVVLGD
INGVVTLDGQGVAETSLNVHGSEPECVWAIRFHSMGAEEREERKAGGKSN
QKKLAGLGLEGIDRKNEGAAIAMTMLTHTSPSASSSASSSSSSSSSSASS
SLGFIPSSHIAKKVKNRGKSTSDDNMSSSSHDRTGSSGSSGSGDGSVSSS
DEPGTSEIPHGSAKMMVTTFRRRSSSSSSSSSREGGEGDDWEKSSEASME
VEVE*

mRNA from alignment at scaffold_2:85491..87422-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_644 ID=mRNA_644|Name=jgi.p|Nanoce1779_2|573630|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp|location=Sequence derived from alignment at scaffold_2:85491..87422- (Nannochloropsis oceanica)
GGCGGCTGCTGCAATGGCAGAGCTTGCGGCCGGGTATCGACGGGATGCGG
ATGAAGACGAGGAGGAGGACGAGGAGGAGGACGAGACGTCGTCGATGGAC
TCGCGCAAGGGAAATGTGGACGAGGAGGACCCCCCTCCTCTAAAGGGTGG
GGGAAGTAGCAGAACCAAGGCAGCTGTTGCTGCCGCGGCCGCGATGGCAG
AAATGGCTCTGAGGCCCAAGAGCAGCAGCAGCAGCAGCAATAGCAATAGC
GGCAAGAGTGACGCGTCGAGTGGCAACAAGCCCTCGCCCAATTTAATCGC
CGTTGCCTCCTCCTCCACTGCCCTCTCCTCCTATTCCTCTTCCCACCGGC
TCCCCCGCAATGAAACCACACCCAACCACCCCTCCTCCACCAGCAACCCG
AAAAAACAGCGCCTCTCCAGCATCTCCGGCATCGGCCTTGGGGGCAAGTC
AACGGTTTTCATCCCCACCGCGGGCGGTCGCACCCTCACCCGTGACGTGT
GGCAGCTTGCCCAAGTCCCTTGCGCTTTGGGAGGGAGACAGGAGGGGGGG
GAGGACAAGTCGGATCCCTCGACCTCATCCTTGTCGGGAGGGCAGGAAGG
GCCGACTGGAAGTCAGACGTTCACTTCCCGGGAGCCTGGCTCCAGCACGA
ATAGTAACATTGCACAGTTTTTGCCGATGGGCCACCCCGCGTCGAACGAA
TTCACCTACCAGATTTCGAATGTGGAGTTTGTAACACGGGCGGGCGGGGT
GGTTTTGGGAGATATCAACGGGGTGGTGACGTTGGATGGCCAGGGAGTGG
CGGAGACGAGTCTTAATGTGCATGGCTCCGAGCCAGAGTGCGTTTGGGCG
ATTCGATTCCACTCGATGGGGGCGGAGGAGAGGGAGGAACGGAAGGCGGG
AGGGAAGAGCAATCAAAAGAAACTGGCGGGGTTGGGGTTGGAAGGGATTG
ACAGAAAGAATGAGGGAGCGGCGATTGCGATGACGATGTTGACGCATACC
TCACCCTCTGCCTCCTCCTCGGCCTCCTCCTCGTCCTCTTCATCCTCCTC
TTCTGCTTCCTCCTCCTTGGGCTTTATCCCGTCCTCTCACATTGCTAAGA
AGGTCAAGAACCGCGGCAAGTCTACCAGCGACGATAACATGAGCAGCAGC
AGTCACGACCGCACGGGCAGCAGTGGCAGCAGTGGAAGCGGAGACGGAAG
TGTTTCATCCTCTGACGAGCCAGGTACATCTGAAATACCCCACGGGTCGG
CCAAGATGATGGTAACCACCTTTAGGAGGAGGAGCAGCAGCAGCAGCAGC
AGCAGTAGTAGAGAAGGGGGAGAGGGAGACGACTGGGAAAAGTCCTCGGA
GGCGTCGATGGAGGTGGAAGTCGAGTGATCAGTGATCAAGTGTCTTGCAA
TGTCGATTTGATACTTGATACTTGAATTTGCTTGCTTTATAGACATATGC
AAGGAAGAGGGAGACGGGAGGGATAAAAGGCGAAGACAAAGTATTCTCTT
GGAAATAAAAGAGAAGGTGCCTTTGTAAAATAGAATAGACGAGGATGCGA
AAGAGGGAAGGAGGAACGGAGAGAATGAGCAACATCATAATCTATTCGAT
TTTTTTTAGATAGTTTATTTAAATGTGTACATAAGGAAACGAGAAAGACG
AGAGAACGTTTTCATGGGTGCGTCGCCAGAGAGTGAATGCGACGCTTAAC
TGCGAATCAGACGAAGGATGGAAGAGGAGCAATTATAACCAGGACTAGAA
AAAGATAAATATTAGGGGGAAGGAGAGATTGAGGAAAGGGCCATTTATCA
TTTATAGAGCGATACAAATATATAGATAGAAGACTTAGACAAGTCGCGGA
AAAATGACATGAGGAAATCCCGACCAAACTTCCTCCAACCGGCGCACAGC
AATCCAACACGAAGAAAATTAGATTTTAAGAA

Coding sequence (CDS) from alignment at scaffold_2:85491..87422-

>mRNA_644 ID=mRNA_644|Name=jgi.p|Nanoce1779_2|573630|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at scaffold_2:85491..87422- (Nannochloropsis oceanica)
ATGGCAGAGCTTGCGGCCGGGTATCGACGGGATGCGGATGAAGACGAGGA
GGAGGACGAGGAGGAGGACGAGACGTCGTCGATGGACTCGCGCAAGGGAA
ATGTGGACGAGGAGGACCCCCCTCCTCTAAAGGGTGGGGGAAGTAGCAGA
ACCAAGGCAGCTGTTGCTGCCGCGGCCGCGATGGCAGAAATGGCTCTGAG
GCCCAAGAGCAGCAGCAGCAGCAGCAATAGCAATAGCGGCAAGAGTGACG
CGTCGAGTGGCAACAAGCCCTCGCCCAATTTAATCGCCGTTGCCTCCTCC
TCCACTGCCCTCTCCTCCTATTCCTCTTCCCACCGGCTCCCCCGCAATGA
AACCACACCCAACCACCCCTCCTCCACCAGCAACCCGAAAAAACAGCGCC
TCTCCAGCATCTCCGGCATCGGCCTTGGGGGCAAGTCAACGGTTTTCATC
CCCACCGCGGGCGGTCGCACCCTCACCCGTGACGTGTGGCAGCTTGCCCA
AGTCCCTTGCGCTTTGGGAGGGAGACAGGAGGGGGGGGAGGACAAGTCGG
ATCCCTCGACCTCATCCTTGTCGGGAGGGCAGGAAGGGCCGACTGGAAGT
CAGACGTTCACTTCCCGGGAGCCTGGCTCCAGCACGAATAGTAACATTGC
ACAGTTTTTGCCGATGGGCCACCCCGCGTCGAACGAATTCACCTACCAGA
TTTCGAATGTGGAGTTTGTAACACGGGCGGGCGGGGTGGTTTTGGGAGAT
ATCAACGGGGTGGTGACGTTGGATGGCCAGGGAGTGGCGGAGACGAGTCT
TAATGTGCATGGCTCCGAGCCAGAGTGCGTTTGGGCGATTCGATTCCACT
CGATGGGGGCGGAGGAGAGGGAGGAACGGAAGGCGGGAGGGAAGAGCAAT
CAAAAGAAACTGGCGGGGTTGGGGTTGGAAGGGATTGACAGAAAGAATGA
GGGAGCGGCGATTGCGATGACGATGTTGACGCATACCTCACCCTCTGCCT
CCTCCTCGGCCTCCTCCTCGTCCTCTTCATCCTCCTCTTCTGCTTCCTCC
TCCTTGGGCTTTATCCCGTCCTCTCACATTGCTAAGAAGGTCAAGAACCG
CGGCAAGTCTACCAGCGACGATAACATGAGCAGCAGCAGTCACGACCGCA
CGGGCAGCAGTGGCAGCAGTGGAAGCGGAGACGGAAGTGTTTCATCCTCT
GACGAGCCAGGTACATCTGAAATACCCCACGGGTCGGCCAAGATGATGGT
AACCACCTTTAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGTAGTAGAG
AAGGGGGAGAGGGAGACGACTGGGAAAAGTCCTCGGAGGCGTCGATGGAG
GTGGAAGTCGAGTGA

Synonyms

Publications