jgi.p|Nanoce1779_2|640395, mRNA_6436 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640395
Unique NamemRNA_6436
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length480
Alignment locationscaffold_15:636339..637255 +

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Properties
Property NameValue
TranscriptId640481
TrackFilteredModels2
ProteinId640395
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:636339..637255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640395gene_6436Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640395mRNA_6436-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6436CDS_6436Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6436 ID=mRNA_6436|Name=jgi.p|Nanoce1779_2|640395|organism=Nannochloropsis oceanica|type=mRNA|length=480bp
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCG
GCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCT
ATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGA
GGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGT
TCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAG
GAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTC
CCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCG
AATACGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGC
GAGACCCGCAAGGCCATTCGTGTGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|640395

>mRNA_6436-protein ID=mRNA_6436-protein|Name=jgi.p|Nanoce1779_2|640395|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MALSRFDPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQA
IVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKE
EEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKS
ETRKAIRVE*
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mRNA from alignment at scaffold_15:636339..637255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6436 ID=mRNA_6436|Name=jgi.p|Nanoce1779_2|640395|organism=Nannochloropsis oceanica|type=mRNA|length=917bp|location=Sequence derived from alignment at scaffold_15:636339..637255+ (Nannochloropsis oceanica)
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGTAAGTATTCAGGAGGGAAGG
AAGGTGGAAGTGGAGAGGAGGCGGCGGTAGGCAGGGATGGATGGCGGGAG
GAAGATCTCGAAACTAAAGGAAGAGGTCACCTTTCTTTCTATAGCTGACC
AGGCACCGGCCTCACATCCATCTTCCACCTCTCCTACACCCACCTACCCT
CTCTTTCTACACAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGG
CTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCAACCTG
AGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGC
GCCGGGCATGAAGAAGGAAGGTATGTTGGCGTTGTGGCTGAAGGGAGTGG
TGAGGATGCTGTCTTGCCTGTTGTCTTCCTTCTGTCGTTCTTTCCTTATA
TCCTTACACCCACCCTCGCTTTCTCCCTTCCACTCTGGTTCCAGACTTCG
ATGTGACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAG
GAGAAGGAGGAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGG
CTCTTGCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACA
TCAAGGCCGAATACGACGCGGGCGTTCTTAAGGTAAAGAGGATGAAAGGG
AAGAAGGCAGAGAGGGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGC
CTTTGATTCTCACACCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCC
CCCCCTCTAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGG
CCATTCGTGTGGAGTAG
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Coding sequence (CDS) from alignment at scaffold_15:636339..637255+

>mRNA_6436 ID=mRNA_6436|Name=jgi.p|Nanoce1779_2|640395|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_15:636339..637255+ (Nannochloropsis oceanica)
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCG
GCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCT
ATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGA
GGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGT
TCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAG
GAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTC
CCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCG
AATACGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGC
GAGACCCGCAAGGCCATTCGTGTGGAGTAGATGGCTCTCTCTCGCTTCGA
CCCCTTTGGATCCATGCTCACCGAGCGCGACCCGTTTGCCGACTTCTTTA
GCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTTG
ACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCAACCTGAGCCT
GGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGCGCCGG
GCATGAAGAAGGAAGACTTCGATGTGACGTTCGAGAACAACGTTCTGCGT
GTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACGCACGTTGGCA
CATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTTCGCCTTCCTC
GTGCCGCTGGCTGCGAGAACATCAAGGCCGAATACGACGCGGGCGTTCTT
AAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCG
TGTGGAGTAGATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCA
CCGAGCGCGACCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTT
GCCCCCAGCGGCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCG
CGGACAAGCTATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACA
ACGAGTTTGAGGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTC
GATGTGACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGA
GGAGAAGGAGGAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGG
GCTCTTGCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAAC
ATCAAGGCCGAATACGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGAC
GCAGAAGAGCGAGACCCGCAAGGCCATTCGTGTGGAGTAGATGGCTCTCT
CTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCGTTTGCC
GACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGG
CGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCA
ACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTT
GATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGTTCGAGAACAA
CGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACG
CACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTT
CGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCGAATACGACGC
GGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCA
AGGCCATTCGTGTGGAGTAG
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Synonyms
Publications