jgi.p|Nanoce1779_2|595007, mRNA_6434 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595007
Unique NamemRNA_6434
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1042
Alignment locationscaffold_15:626174..627309 +

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Properties
Property NameValue
TranscriptId595093
TrackFilteredModels2
ProteinId595007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:626174..627309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595007gene_6434Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595007mRNA_6434-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6434CDS_6434Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6434 ID=mRNA_6434|Name=jgi.p|Nanoce1779_2|595007|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp
ACCACCAACTACGGAGGGAATGTAGACAAGCAAAGGTCGTTCATTTGGCC
GGCTTATTTAGTTAGCACTCGGTAACGAAGAGCTTGCTGCTTCCTTGACC
TCCCCTCCCGCCTCCACTTACGGTCTCAAACGACTTCAGACTTACATAGG
CATCGCAACCGCGACATCTTTGAGGCACAGATACGCACAACCCAAGTAAA
CTGCAACGCCAAGCACTGAATGCGCCTTCAAAGCTGCCATCTTGTTCCAT
TTGCCCTCCTCCTGGAAACATATCGCTCGCTTTCCTTCTCGATCCGAATG
CCATCAACGTCCACTGCAGCCCACCGACTTGTTATTGTGCCTGGTAATGG
TGGCGGCGACGTAACACAGGCCAACTGGTACGGGTGGGCCCAAAGGTCTT
TGGCAAGTCTGCCCGGAATCGAGGAAGTCCTGCTCCAGAATATGCCGGAC
CCTTACACGGCACGCGAGAGCATTTGGCTGCCATTCATGAAAGAAAAGTT
GAAATGCGATGCGTCCACCATCATCATCGGTCACTCGAGCGGGGCCGAGG
CCGCCATGCGCTTTGCCGAAACCAACCGCGTAGCAGGCTTGGTACTGGTA
TCGGCGTGTGTCACGGACCTGGGTAATGCCAATGAACGTGCGAGTGGCTA
TTACAGCAGGCCGTGGGGATGGGAACGCATCAAGAACAATGCCGGATTCA
TTATTCAATTTGGAAGCTCGGATGACCCCTTCATACCATGGAACGAGCAT
CAAGCCGTTCATGAGGGGACAGGGAGCGAGTTGTATGCGTCCGACAGCGA
AGGACACTACATGACTGTAGATTTCCCGCTGCTCAAGAAGGTGTTGGGCG
CAAAGTTGAGTGGTGATCCTGGTAAGAAAAAAGAAATGGAATAACACGAG
GCAAAACCTGTGTTTTTTTTTCTTAAGCATCTTATTCAGTTTTCTTTTGT
TCTGAGTGAATTTTTCTCCGTCTTCGTCATTTTAATTTTTCTCTTGAGGC
ATCATGGGTCTGTACATGGAGTTGGAGAGGTCTCCGAACGAA
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protein sequence of jgi.p|Nanoce1779_2|595007

>mRNA_6434-protein ID=mRNA_6434-protein|Name=jgi.p|Nanoce1779_2|595007|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MRLQSCHLVPFALLLETYRSLSFSIRMPSTSTAAHRLVIVPGNGGGDVTQ
ANWYGWAQRSLASLPGIEEVLLQNMPDPYTARESIWLPFMKEKLKCDAST
IIIGHSSGAEAAMRFAETNRVAGLVLVSACVTDLGNANERASGYYSRPWG
WERIKNNAGFIIQFGSSDDPFIPWNEHQAVHEGTGSELYASDSEGHYMTV
DFPLLKKVLGAKLSGDPGKKKEME*
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mRNA from alignment at scaffold_15:626174..627309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6434 ID=mRNA_6434|Name=jgi.p|Nanoce1779_2|595007|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp|location=Sequence derived from alignment at scaffold_15:626174..627309+ (Nannochloropsis oceanica)
ACCACCAACTACGGAGGGAATGTAGACAAGCAAAGGTCGTTCATTTGGCC
GGCTTATTTAGTTAGCACTCGGTAACGAAGAGCTTGCTGCTTCCTTGACC
TCCCCTCCCGCCTCCACTTACGGTCTCAAACGACTTCAGACTTACATAGG
CATCGCAACCGCGACATCTTTGAGGCACAGATACGCACAACCCAAGTAAA
CTGTACGCTCTTGATCGAATCTTCCCTCCCCACCCTTTCTCGTCAGCCCC
CCGCGAGAAGTCTTGCTCACACTATCACAAATCTTCCCCAAAGCAGGCAA
CGCCAAGCACTGAATGCGCCTTCAAAGCTGCCATCTTGTTCCATTTGCCC
TCCTCCTGGAAACATATCGCTCGCTTTCCTTCTCGATCCGAATGCCATCA
ACGTCCACTGCAGCCCACCGACTTGTTATTGTGCCTGGTAATGGTGGCGG
CGACGTAACACAGGCCAACTGGTACGGGTGGGCCCAAAGGTCTTTGGCAA
GTCTGCCCGGAATCGAGGAAGTCCTGCTCCAGAATATGCCGGACCCTTAC
ACGGCACGCGAGAGCATTTGGCTGCCATTCATGAAAGAAAAGTTGAAATG
CGATGCGTCCACCATCATCATCGGTCACTCGAGCGGGGCCGAGGCCGCCA
TGCGCTTTGCCGAAACCAACCGCGTAGCAGGCTTGGTACTGGTATCGGCG
TGTGTCACGGACCTGGGTAATGCCAATGAACGTGCGAGTGGCTATTACAG
CAGGCCGTGGGGATGGGAACGCATCAAGAACAATGCCGGATTCATTATTC
AATTTGGAAGCTCGGATGACCCCTTCATACCATGGAACGAGCATCAAGCC
GTTCATGAGGGGACAGGGAGCGAGTTGTATGCGTCCGACAGCGAAGGACA
CTACATGACTGTAGATTTCCCGCTGCTCAAGAAGGTGTTGGGCGCAAAGT
TGAGTGGTGATCCTGGTAAGAAAAAAGAAATGGAATAACACGAGGCAAAA
CCTGTGTTTTTTTTTCTTAAGCATCTTATTCAGTTTTCTTTTGTTCTGAG
TGAATTTTTCTCCGTCTTCGTCATTTTAATTTTTCTCTTGAGGCATCATG
GGTCTGTACATGGAGTTGGAGAGGTCTCCGAACGAA
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Coding sequence (CDS) from alignment at scaffold_15:626174..627309+

>mRNA_6434 ID=mRNA_6434|Name=jgi.p|Nanoce1779_2|595007|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_15:626174..627309+ (Nannochloropsis oceanica)
ATGCGCCTTCAAAGCTGCCATCTTGTTCCATTTGCCCTCCTCCTGGAAAC
ATATCGCTCGCTTTCCTTCTCGATCCGAATGCCATCAACGTCCACTGCAG
CCCACCGACTTGTTATTGTGCCTGGTAATGGTGGCGGCGACGTAACACAG
GCCAACTGGTACGGGTGGGCCCAAAGGTCTTTGGCAAGTCTGCCCGGAAT
CGAGGAAGTCCTGCTCCAGAATATGCCGGACCCTTACACGGCACGCGAGA
GCATTTGGCTGCCATTCATGAAAGAAAAGTTGAAATGCGATGCGTCCACC
ATCATCATCGGTCACTCGAGCGGGGCCGAGGCCGCCATGCGCTTTGCCGA
AACCAACCGCGTAGCAGGCTTGGTACTGGTATCGGCGTGTGTCACGGACC
TGGGTAATGCCAATGAACGTGCGAGTGGCTATTACAGCAGGCCGTGGGGA
TGGGAACGCATCAAGAACAATGCCGGATTCATTATTCAATTTGGAAGCTC
GGATGACCCCTTCATACCATGGAACGAGCATCAAGCCGTTCATGAGGGGA
CAGGGAGCGAGTTGTATGCGTCCGACAGCGAAGGACACTACATGACTGTA
GATTTCCCGCTGCTCAAGAAGGTGTTGGGCGCAAAGTTGAGTGGTGATCC
TGGTAAGAAAAAAGAAATGGAATAA
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Synonyms
Publications