jgi.p|Nanoce1779_2|92889, mRNA_6431 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|92889
Unique Name	mRNA_6431
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3085
Alignment location	scaffold_15:607905..610989 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	92975
Track	FilteredModels2
ProteinId	92889

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:607905..610989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|92889	gene_6431	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|92889	mRNA_6431-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6431	CDS_6431	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:607905..610989+
coding sequence from alignment at scaffold_15:607905..610989+

mRNA sequence

>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Nanoce1779_2|92889|organism=Nannochloropsis oceanica|type=mRNA|length=3085bp
TTTTTAAGGTCGGTAATTACTTACGACGATGTCATTCTCCGTTCACTCTC
TGTCTCTTTTGTGCTGTGCTTTTCTTTCCTCTTCTACCCTCTCTCAACCG
CCGACACAACCACGACCCACATCTTTCTTTACATCAAATCAGGCCTATGC
CCAGACAACCTGTTCTTCCACGCCGTTACTTGCCAGCTGGTCAAGCTAGA
GCTGGAGGCTTTGAATTTTGTGGTGAACTTTGCCACGGTGGAAGTGGAAG
GAGGCGCGGCGAAGGAAGGGACCTGGGAAGGGCTACGACGTAAATACTGG
CATGGACGAGAGGAGTACTATTTGCCTGGTGAGCGCACGCTCTCTCATCT
CATTTTCCTCGTAAATCAACATTTAATTTGATTGTCAAAGATTCCATATA
TGCCTGACCTCACTTTCCTCGCCCACTTACTCCTATTCTTGATTCGTTCC
TTCCCCTCTCTCAGTGGCTATCTTTCAAGGTAAAGGCGCAGACGTGGGAA
AGGACGAAATGGAGCCAGCACGAGGCGAGACGCCAAGAGAGAACTCCACA
AACGACAATGAAACGGCCGACGACACTTTAGTGGGTGAGGCCCAAGTCGG
CGAGGAGAAGACAGTCGAAGTCCTACTTCATGCTGCCCTCGATCCTGAGG
CTGGTGGCCTGACCTGGCGGCCATACCCGGACATGAGAGGACGTCTCGAT
AACGTCTGCCTCCTTCAGCTCCGATGTTGGTTTCCCCCTATGTTGCATGA
TGCCCATCGACATACTATCTTTCGGCGGGCAATTCAAGGGGCGGTTCATA
AAGTGCAACGCCAAGACTCACGACAGCTTCTGCTACAGCAGCAGCAGCAG
CAGCGGGGGCAGGAAAGAGGAGGGAGGGAGGTCCGGGCGCTGGACATCGG
TACAGGCACCTCTTTGCTCAGCCTAGAAGCCGTAAGGGCCGGTGTCACGC
ATGTGGTGGCTTGTGAGGGCTTTCCTGCCTTGGCAGCAGTGGCGCAAGAG
GTGGTGCGCTTCGCCGGAATGGAGAAGCAAATAGACGTCTTGAGCAAGCG
AAGCACGGCGCTGGAGAAGGAGGAGACGGGGTCCATCGATCTGGTCGTTT
CCGAGCTGTTGGATTCTACCTTGTTGGGCGAAGGCTACCTCAGCACGCTT
CGTGACCTCTACACCCGGGGGCTTGTATCACCAAATGCCTGTGTGGTGCC
GGCGCGGGCGCGGGTGTGGGCGCAACTGATTGAATGTCCAGAGCTGCCCT
CGCACTTTCACATCCCAACAGCCAATGTGGCATGTGCGGGGGGAGGACGG
CCGCTGCCTCTTTACTTGGCACCACCCACAAATGGGCCAGCAGCGGGCAG
CAGCACAGCAGTAGCAGAGACCGGAAGCGAAAGAAAGAGAGTGCGGTCAG
ATACTGACGACGCAACGGCTGCGACGACTGGGGATGCAAAGACCCAAAAA
CAGGGATTTGCCGGAGGCCCCATCCCTTGCATTGCCGTATCAGCGCCGTT
TTCCCTGTTGGACATTGACTTTGCAGCAGTGACATCCGAGACAAGCCCAG
GAGCAGACGTAAGGAACGGACCCATCCAGATGGGCCTGCCCCTCACGGTG
CCGGTCCTGCGAAAGGGTACGCTTCATGGCGTGCTGATGTGGTGGGATTT
GATACCCTTGGACAAGACTGAGGTCTATACCAGTATGCCACGCAACCCAA
GCACGGACCCGCTGTGGCAAGACCACTGGAAGCCCTGTGTCTGGCCCTTG
GCCACGCCGAGAGCCGTCGACGCTACACAAACCATTCCAGTCCAAGGCGC
GCACGACGATCAGACCATGTGGGTGGAGGTGGGGGGAGACGATATGGACC
AGTCTGCCCGCCGGTTGCGCGAAGGGCCTAGCCCGTGTATATGTGGCCTG
CATGCGTCGTTGCCTGTGGGACGGGTTCTGGAATTGAATGATACAAGCCG
GCTGGACACCTATCGCCTGGCGATGCAGCAGGTCTTGGGGGAGAGGAAGG
ATGACGTGTGCACCATCTTGGACATATGCGATGGCGGGTTGGTCGTGTCT
TGCTTGCTTGACATCCGTCGAGATCTGGGCGGGGAGCACCCTATTTGCCC
CCCATCTTCCAAGTTGGTTAGCTTGGAGCAGCATCCATGGTACGCCGCGG
TGCTGGAACGAAGCTGCCGCAGTGGGGGCGGTACCAACTGTAGCAGTGCT
CAAAACAATGACGCGGCCGATACTCAATTGGCAGTCTGGCGGGGGGCGGG
GGCGGGAGAGGGCTGGAATTCTGCAGCGTGGGGGGAAGATGTTCATGTGC
TCTGCGGTGATGGCTATTATGCGAAGGTGGGGCCGAATCGCCCTGTGTGG
AGCTGGCTCAACTTTTGGCTTCTGCGGACGGCACTGGCCCCTGTCCTGGC
GCGTGACGTGGTTGTGTTGCCTTTTCAGGCCCGTCTCATGGCAGCTGTAG
TGGAGTGTCCTTCTTTGTATCGGGTGCACGGAGGAGGGAGGCCAGTCGCG
GACGACGACTTGCTGGGAGGGTGGAATCACGATGCATATCGCCGAGCAGT
GGAAGAAGGGGCAGCACGTGCGATGTGCGACGAAGATAGGGATTTGCCCG
TATCCTTGGCTAACCATCCGCATCGCTTCTTGACGCCGCCGGCGTTGGTG
ATGCGTTTAGATTTGCACCATGCCATTGATTGGACAGCGCCAAGGGCAGA
GGACGGAGCGTACCGGCGAAACGTCATCCACGTACCGTTTGAGCAAGCAG
GCTGCGTACATGCCTTGGCCTTGTGGGTGGATGTTGATTTGACTTACGGA
GCGGCGACGGGGAGTGACCCTTCTTTGGTTGTTTCTGGGTGTGAAACTCG
GCATGCGCGGCAGACATTAAGGTGGTTGAGTGGGGAGAAGGTGGGCCAAG
GAGAGGAGGGAGGGAAGAGGTGGGGCGTAGAGATCAAGGCAGCCATGGAC
TTGGCGGAAACACCAGGCATTTGGACGGAATGTCGGATCATGGAGAGAGG
AGGAGGGGACGGGGGTGGGAAGAATGGGGAGGATGAACGCGATTGATAAG
CAAGGGCAGTGATTCGGCTTGCATGTTATTTTAAG

protein sequence of jgi.p|Nanoce1779_2|92889

>mRNA_6431-protein ID=mRNA_6431-protein|Name=jgi.p|Nanoce1779_2|92889|organism=Nannochloropsis oceanica|type=polypeptide|length=846bp
MEPARGETPRENSTNDNETADDTLVGEAQVGEEKTVEVLLHAALDPEAGG
LTWRPYPDMRGRLDNVCLLQLRCWFPPMLHDAHRHTIFRRAIQGAVHKVQ
RQDSRQLLLQQQQQQRGQERGGREVRALDIGTGTSLLSLEAVRAGVTHVV
ACEGFPALAAVAQEVVRFAGMEKQIDVLSKRSTALEKEETGSIDLVVSEL
LDSTLLGEGYLSTLRDLYTRGLVSPNACVVPARARVWAQLIECPELPSHF
HIPTANVACAGGGRPLPLYLAPPTNGPAAGSSTAVAETGSERKRVRSDTD
DATAATTGDAKTQKQGFAGGPIPCIAVSAPFSLLDIDFAAVTSETSPGAD
VRNGPIQMGLPLTVPVLRKGTLHGVLMWWDLIPLDKTEVYTSMPRNPSTD
PLWQDHWKPCVWPLATPRAVDATQTIPVQGAHDDQTMWVEVGGDDMDQSA
RRLREGPSPCICGLHASLPVGRVLELNDTSRLDTYRLAMQQVLGERKDDV
CTILDICDGGLVVSCLLDIRRDLGGEHPICPPSSKLVSLEQHPWYAAVLE
RSCRSGGGTNCSSAQNNDAADTQLAVWRGAGAGEGWNSAAWGEDVHVLCG
DGYYAKVGPNRPVWSWLNFWLLRTALAPVLARDVVVLPFQARLMAAVVEC
PSLYRVHGGGRPVADDDLLGGWNHDAYRRAVEEGAARAMCDEDRDLPVSL
ANHPHRFLTPPALVMRLDLHHAIDWTAPRAEDGAYRRNVIHVPFEQAGCV
HALALWVDVDLTYGAATGSDPSLVVSGCETRHARQTLRWLSGEKVGQGEE
GGKRWGVEIKAAMDLAETPGIWTECRIMERGGGDGGGKNGEDERD*

mRNA from alignment at scaffold_15:607905..610989+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Nanoce1779_2|92889|organism=Nannochloropsis oceanica|type=mRNA|length=3085bp|location=Sequence derived from alignment at scaffold_15:607905..610989+ (Nannochloropsis oceanica)
TTTTTAAGGTCGGTAATTACTTACGACGATGTCATTCTCCGTTCACTCTC
TGTCTCTTTTGTGCTGTGCTTTTCTTTCCTCTTCTACCCTCTCTCAACCG
CCGACACAACCACGACCCACATCTTTCTTTACATCAAATCAGGCCTATGC
CCAGACAACCTGTTCTTCCACGCCGTTACTTGCCAGCTGGTCAAGCTAGA
GCTGGAGGCTTTGAATTTTGTGGTGAACTTTGCCACGGTGGAAGTGGAAG
GAGGCGCGGCGAAGGAAGGGACCTGGGAAGGGCTACGACGTAAATACTGG
CATGGACGAGAGGAGTACTATTTGCCTGGTGAGCGCACGCTCTCTCATCT
CATTTTCCTCGTAAATCAACATTTAATTTGATTGTCAAAGATTCCATATA
TGCCTGACCTCACTTTCCTCGCCCACTTACTCCTATTCTTGATTCGTTCC
TTCCCCTCTCTCAGTGGCTATCTTTCAAGGTAAAGGCGCAGACGTGGGAA
AGGACGAAATGGAGCCAGCACGAGGCGAGACGCCAAGAGAGAACTCCACA
AACGACAATGAAACGGCCGACGACACTTTAGTGGGTGAGGCCCAAGTCGG
CGAGGAGAAGACAGTCGAAGTCCTACTTCATGCTGCCCTCGATCCTGAGG
CTGGTGGCCTGACCTGGCGGCCATACCCGGACATGAGAGGACGTCTCGAT
AACGTCTGCCTCCTTCAGCTCCGATGTTGGTTTCCCCCTATGTTGCATGA
TGCCCATCGACATACTATCTTTCGGCGGGCAATTCAAGGGGCGGTTCATA
AAGTGCAACGCCAAGACTCACGACAGCTTCTGCTACAGCAGCAGCAGCAG
CAGCGGGGGCAGGAAAGAGGAGGGAGGGAGGTCCGGGCGCTGGACATCGG
TACAGGCACCTCTTTGCTCAGCCTAGAAGCCGTAAGGGCCGGTGTCACGC
ATGTGGTGGCTTGTGAGGGCTTTCCTGCCTTGGCAGCAGTGGCGCAAGAG
GTGGTGCGCTTCGCCGGAATGGAGAAGCAAATAGACGTCTTGAGCAAGCG
AAGCACGGCGCTGGAGAAGGAGGAGACGGGGTCCATCGATCTGGTCGTTT
CCGAGCTGTTGGATTCTACCTTGTTGGGCGAAGGCTACCTCAGCACGCTT
CGTGACCTCTACACCCGGGGGCTTGTATCACCAAATGCCTGTGTGGTGCC
GGCGCGGGCGCGGGTGTGGGCGCAACTGATTGAATGTCCAGAGCTGCCCT
CGCACTTTCACATCCCAACAGCCAATGTGGCATGTGCGGGGGGAGGACGG
CCGCTGCCTCTTTACTTGGCACCACCCACAAATGGGCCAGCAGCGGGCAG
CAGCACAGCAGTAGCAGAGACCGGAAGCGAAAGAAAGAGAGTGCGGTCAG
ATACTGACGACGCAACGGCTGCGACGACTGGGGATGCAAAGACCCAAAAA
CAGGGATTTGCCGGAGGCCCCATCCCTTGCATTGCCGTATCAGCGCCGTT
TTCCCTGTTGGACATTGACTTTGCAGCAGTGACATCCGAGACAAGCCCAG
GAGCAGACGTAAGGAACGGACCCATCCAGATGGGCCTGCCCCTCACGGTG
CCGGTCCTGCGAAAGGGTACGCTTCATGGCGTGCTGATGTGGTGGGATTT
GATACCCTTGGACAAGACTGAGGTCTATACCAGTATGCCACGCAACCCAA
GCACGGACCCGCTGTGGCAAGACCACTGGAAGCCCTGTGTCTGGCCCTTG
GCCACGCCGAGAGCCGTCGACGCTACACAAACCATTCCAGTCCAAGGCGC
GCACGACGATCAGACCATGTGGGTGGAGGTGGGGGGAGACGATATGGACC
AGTCTGCCCGCCGGTTGCGCGAAGGGCCTAGCCCGTGTATATGTGGCCTG
CATGCGTCGTTGCCTGTGGGACGGGTTCTGGAATTGAATGATACAAGCCG
GCTGGACACCTATCGCCTGGCGATGCAGCAGGTCTTGGGGGAGAGGAAGG
ATGACGTGTGCACCATCTTGGACATATGCGATGGCGGGTTGGTCGTGTCT
TGCTTGCTTGACATCCGTCGAGATCTGGGCGGGGAGCACCCTATTTGCCC
CCCATCTTCCAAGTTGGTTAGCTTGGAGCAGCATCCATGGTACGCCGCGG
TGCTGGAACGAAGCTGCCGCAGTGGGGGCGGTACCAACTGTAGCAGTGCT
CAAAACAATGACGCGGCCGATACTCAATTGGCAGTCTGGCGGGGGGCGGG
GGCGGGAGAGGGCTGGAATTCTGCAGCGTGGGGGGAAGATGTTCATGTGC
TCTGCGGTGATGGCTATTATGCGAAGGTGGGGCCGAATCGCCCTGTGTGG
AGCTGGCTCAACTTTTGGCTTCTGCGGACGGCACTGGCCCCTGTCCTGGC
GCGTGACGTGGTTGTGTTGCCTTTTCAGGCCCGTCTCATGGCAGCTGTAG
TGGAGTGTCCTTCTTTGTATCGGGTGCACGGAGGAGGGAGGCCAGTCGCG
GACGACGACTTGCTGGGAGGGTGGAATCACGATGCATATCGCCGAGCAGT
GGAAGAAGGGGCAGCACGTGCGATGTGCGACGAAGATAGGGATTTGCCCG
TATCCTTGGCTAACCATCCGCATCGCTTCTTGACGCCGCCGGCGTTGGTG
ATGCGTTTAGATTTGCACCATGCCATTGATTGGACAGCGCCAAGGGCAGA
GGACGGAGCGTACCGGCGAAACGTCATCCACGTACCGTTTGAGCAAGCAG
GCTGCGTACATGCCTTGGCCTTGTGGGTGGATGTTGATTTGACTTACGGA
GCGGCGACGGGGAGTGACCCTTCTTTGGTTGTTTCTGGGTGTGAAACTCG
GCATGCGCGGCAGACATTAAGGTGGTTGAGTGGGGAGAAGGTGGGCCAAG
GAGAGGAGGGAGGGAAGAGGTGGGGCGTAGAGATCAAGGCAGCCATGGAC
TTGGCGGAAACACCAGGCATTTGGACGGAATGTCGGATCATGGAGAGAGG
AGGAGGGGACGGGGGTGGGAAGAATGGGGAGGATGAACGCGATTGATAAG
CAAGGGCAGTGATTCGGCTTGCATGTTATTTTAAG

Coding sequence (CDS) from alignment at scaffold_15:607905..610989+

>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Nanoce1779_2|92889|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_15:607905..610989+ (Nannochloropsis oceanica)
ATGGAGCCAGCACGAGGCGAGACGCCAAGAGAGAACTCCACAAACGACAA
TGAAACGGCCGACGACACTTTAGTGGGTGAGGCCCAAGTCGGCGAGGAGA
AGACAGTCGAAGTCCTACTTCATGCTGCCCTCGATCCTGAGGCTGGTGGC
CTGACCTGGCGGCCATACCCGGACATGAGAGGACGTCTCGATAACGTCTG
CCTCCTTCAGCTCCGATGTTGGTTTCCCCCTATGTTGCATGATGCCCATC
GACATACTATCTTTCGGCGGGCAATTCAAGGGGCGGTTCATAAAGTGCAA
CGCCAAGACTCACGACAGCTTCTGCTACAGCAGCAGCAGCAGCAGCGGGG
GCAGGAAAGAGGAGGGAGGGAGGTCCGGGCGCTGGACATCGGTACAGGCA
CCTCTTTGCTCAGCCTAGAAGCCGTAAGGGCCGGTGTCACGCATGTGGTG
GCTTGTGAGGGCTTTCCTGCCTTGGCAGCAGTGGCGCAAGAGGTGGTGCG
CTTCGCCGGAATGGAGAAGCAAATAGACGTCTTGAGCAAGCGAAGCACGG
CGCTGGAGAAGGAGGAGACGGGGTCCATCGATCTGGTCGTTTCCGAGCTG
TTGGATTCTACCTTGTTGGGCGAAGGCTACCTCAGCACGCTTCGTGACCT
CTACACCCGGGGGCTTGTATCACCAAATGCCTGTGTGGTGCCGGCGCGGG
CGCGGGTGTGGGCGCAACTGATTGAATGTCCAGAGCTGCCCTCGCACTTT
CACATCCCAACAGCCAATGTGGCATGTGCGGGGGGAGGACGGCCGCTGCC
TCTTTACTTGGCACCACCCACAAATGGGCCAGCAGCGGGCAGCAGCACAG
CAGTAGCAGAGACCGGAAGCGAAAGAAAGAGAGTGCGGTCAGATACTGAC
GACGCAACGGCTGCGACGACTGGGGATGCAAAGACCCAAAAACAGGGATT
TGCCGGAGGCCCCATCCCTTGCATTGCCGTATCAGCGCCGTTTTCCCTGT
TGGACATTGACTTTGCAGCAGTGACATCCGAGACAAGCCCAGGAGCAGAC
GTAAGGAACGGACCCATCCAGATGGGCCTGCCCCTCACGGTGCCGGTCCT
GCGAAAGGGTACGCTTCATGGCGTGCTGATGTGGTGGGATTTGATACCCT
TGGACAAGACTGAGGTCTATACCAGTATGCCACGCAACCCAAGCACGGAC
CCGCTGTGGCAAGACCACTGGAAGCCCTGTGTCTGGCCCTTGGCCACGCC
GAGAGCCGTCGACGCTACACAAACCATTCCAGTCCAAGGCGCGCACGACG
ATCAGACCATGTGGGTGGAGGTGGGGGGAGACGATATGGACCAGTCTGCC
CGCCGGTTGCGCGAAGGGCCTAGCCCGTGTATATGTGGCCTGCATGCGTC
GTTGCCTGTGGGACGGGTTCTGGAATTGAATGATACAAGCCGGCTGGACA
CCTATCGCCTGGCGATGCAGCAGGTCTTGGGGGAGAGGAAGGATGACGTG
TGCACCATCTTGGACATATGCGATGGCGGGTTGGTCGTGTCTTGCTTGCT
TGACATCCGTCGAGATCTGGGCGGGGAGCACCCTATTTGCCCCCCATCTT
CCAAGTTGGTTAGCTTGGAGCAGCATCCATGGTACGCCGCGGTGCTGGAA
CGAAGCTGCCGCAGTGGGGGCGGTACCAACTGTAGCAGTGCTCAAAACAA
TGACGCGGCCGATACTCAATTGGCAGTCTGGCGGGGGGCGGGGGCGGGAG
AGGGCTGGAATTCTGCAGCGTGGGGGGAAGATGTTCATGTGCTCTGCGGT
GATGGCTATTATGCGAAGGTGGGGCCGAATCGCCCTGTGTGGAGCTGGCT
CAACTTTTGGCTTCTGCGGACGGCACTGGCCCCTGTCCTGGCGCGTGACG
TGGTTGTGTTGCCTTTTCAGGCCCGTCTCATGGCAGCTGTAGTGGAGTGT
CCTTCTTTGTATCGGGTGCACGGAGGAGGGAGGCCAGTCGCGGACGACGA
CTTGCTGGGAGGGTGGAATCACGATGCATATCGCCGAGCAGTGGAAGAAG
GGGCAGCACGTGCGATGTGCGACGAAGATAGGGATTTGCCCGTATCCTTG
GCTAACCATCCGCATCGCTTCTTGACGCCGCCGGCGTTGGTGATGCGTTT
AGATTTGCACCATGCCATTGATTGGACAGCGCCAAGGGCAGAGGACGGAG
CGTACCGGCGAAACGTCATCCACGTACCGTTTGAGCAAGCAGGCTGCGTA
CATGCCTTGGCCTTGTGGGTGGATGTTGATTTGACTTACGGAGCGGCGAC
GGGGAGTGACCCTTCTTTGGTTGTTTCTGGGTGTGAAACTCGGCATGCGC
GGCAGACATTAAGGTGGTTGAGTGGGGAGAAGGTGGGCCAAGGAGAGGAG
GGAGGGAAGAGGTGGGGCGTAGAGATCAAGGCAGCCATGGACTTGGCGGA
AACACCAGGCATTTGGACGGAATGTCGGATCATGGAGAGAGGAGGAGGGG
ACGGGGGTGGGAAGAATGGGGAGGATGAACGCGATTGA

Synonyms

Publications