jgi.p|Nanoce1779_2|594987, mRNA_6430 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594987
Unique Name	mRNA_6430
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1623
Alignment location	scaffold_15:607025..608817 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595073
Track	FilteredModels2
ProteinId	594987

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:607025..608817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594987	gene_6430	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594987	mRNA_6430-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6430	CDS_6430	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:607025..608817+
coding sequence from alignment at scaffold_15:607025..608817+

mRNA sequence

>mRNA_6430 ID=mRNA_6430|Name=jgi.p|Nanoce1779_2|594987|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ACAGGGCCATGACCACCATGACTGCCGGGGACCATCAAGCATTCTTAGCG
GCATGCGGGGCAGGGGACCTAGGGAAAGTGAAGGTGTTTCTCGCAGCCGG
TTTGCCAGCGTATCACCAAGAGGAGGAGGGCGGCACGTCGTTACTTATGC
ACGCCGCTAAGGGCGCCCACCTCGAAGTGGTGCAAGCATTGCTAGAAGCA
GGGGCGCCTTGGATGGCGTTGGATCGGCAGGGTAAATGTGCGGGGGAGTA
CGCCATGGCCAGTGAGGTGGAGGACGCGGAGCGAAAGCAATCCGTCATTG
ATACTTTGGTTAATCATGCGGTCATGGCCGAGATGATATTAGGGACGATG
CAAAACCAGGCAGCTGAAGCTGTGCGCAAGGAGCAACAGCAAGAATCCGC
ACAATACCTGGGGGGGAACGTACGCTACGAGAAGGACCGCTTGGTGGATG
AGACGGAGGAAGGGGTGATGATGGAGTGGGAAGCACCACTTATGGAGGCG
CACGCCAGCTTGCTGTGCGGGGAAGCCAAGAACAGAGATGTGATGAATGT
CGGCTTTGGGATGGGCATTATCGACGAGGCAATTCAACGGCATGGATGTC
GATCTCACACCATCCTTGAGGCGCATCCAACCGTGCTGGAGAAGATGGAA
GCGGAGGGCTGGACACAGAAGGCTGGCGTGACGGTCGAAAGGGGACGTTG
GCAAGAGACCTTGCCTCGGCTTGTGGCGGCGGGCAAGAAATACGATGCCT
TATTTTTTGATACTTACGCCGAGCACTATCGAGACATGCAAGCTTTCCAT
GAGTGGCTCCCAAAGCTGTTGCGACTCGGGGGCATGTACTCCTTTTTCAA
TGGCCTATGCCCAGACAACCTGTTCTTCCACGCCGTTACTTGCCAGCTGG
TCAAGCTAGAGCTGGAGGCTTTGAATTTTGTGGTGAACTTTGCCACGGTG
GAAGTGGAAGGAGGCGCGGCGAAGGAAGGGACCTGGGAAGGGCTACGACG
TAAATACTGGCATGGACGAGAGGAGTACTATTTGCCTGGTGAGCGCACGC
TCTCTCATCTCATTTTCCTCGTAAATCAACATTTAATTTGATTGTCAAAG
ATTCCATATATGCCTGACCTCACTTTCCTCGCCCACTTACTCCTATTCTT
GATTCGTTCCTTCCCCTCTCTCAGTGGCTATCTTTCAAGGTAAAGGCGCA
GACGTGGGAAAGGACGAAATGGAGCCAGCACGAGGCGAGACGCCAAGAGA
GAACTCCACAAACGACAATGAAACGGCCGACGACACTTTAGTGGGTGAGG
CCCAAGTCGGCGAGGAGAAGACAGTCGAAGTCCTACTTCATGCTGCCCTC
GATCCTGAGGCTGGTGGCCTGACCTGGCGGCCATACCCGGACATGAGAGG
ACGTCTCGATAACGTCTGCCTCCTTCAGCTCCGATGTTGGTTTCCCCCTA
TGTTGCATGATGCCCATCGACATACTATCTTTCGGCGGGCAATTCAAGGG
GCGGTTCATAAAGTGCAACGCCAAGACTCACGACAGCTTCTGCTACAGCA
GCAGCAGCAGCAGCGGGGGCAGGAAAGAGGAGGGAGGGAGGTCCGGGCGC
TGGACATCGGTACAGGCACCTCT

protein sequence of jgi.p|Nanoce1779_2|594987

>mRNA_6430-protein ID=mRNA_6430-protein|Name=jgi.p|Nanoce1779_2|594987|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MTTMTAGDHQAFLAACGAGDLGKVKVFLAAGLPAYHQEEEGGTSLLMHAA
KGAHLEVVQALLEAGAPWMALDRQGKCAGEYAMASEVEDAERKQSVIDTL
VNHAVMAEMILGTMQNQAAEAVRKEQQQESAQYLGGNVRYEKDRLVDETE
EGVMMEWEAPLMEAHASLLCGEAKNRDVMNVGFGMGIIDEAIQRHGCRSH
TILEAHPTVLEKMEAEGWTQKAGVTVERGRWQETLPRLVAAGKKYDALFF
DTYAEHYRDMQAFHEWLPKLLRLGGMYSFFNGLCPDNLFFHAVTCQLVKL
ELEALNFVVNFATVEVEGGAAKEGTWEGLRRKYWHGREEYYLPGERTLSH
LIFLVNQHLI*

mRNA from alignment at scaffold_15:607025..608817+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6430 ID=mRNA_6430|Name=jgi.p|Nanoce1779_2|594987|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at scaffold_15:607025..608817+ (Nannochloropsis oceanica)
ACAGGGCCATGACCACCATGACTGCCGGGGACCATCAAGCATTCTTAGCG
GCATGCGGGGCAGGGGACCTAGGGAAAGTGAAGGTGTTTCTCGCAGCCGG
TTTGCCAGCGTATCACCAAGAGGAGGAGGGCGGCACGTCGTTACTTATGC
ACGCCGCTAAGGGCGCCCACCTCGAAGTGGTGCAAGCATTGCTAGAAGCA
GGGGCGCCTTGGATGGCGTTGGATCGGCAGGGTAAATGTGCGGGGGAGTA
CGCCATGGCCAGTGAGGTGGAGGACGCGGAGCGAAAGCAATCCGTCATTG
ATACTTTGGTTAATCATGCGGTCATGGCCGAGATGATATTAGGGACGATG
CAAAACCAGGCAGCTGAAGCTGTGCGCAAGGAGCAACAGCAAGAATCCGC
ACAATACCTGGGGGGGAACGTACGCTACGAGAAGGACCGCTTGGTGGATG
AGACGGAGGAAGGGGTGATGATGGAGTGGGAAGCACCACTTATGGAGGCG
CACGCCAGCTTGCTGTGCGGGGAAGCCAAGAACAGAGATGTGATGAATGT
CGGCTTTGGGATGGGCATTATCGACGAGGCAATTCAACGGCATGGATGTC
GATCTCACACCATCCTTGAGGCGCATCCAACCGTGCTGGAGAAGATGGAA
GCGGAGGGCTGGACACAGAAGGCTGGCGTGACGGTCGAAAGGGGACGTTG
GCAAGAGACCTTGCCTCGGCTTGTGGCGGCGGGCAAGAAATACGATGCCT
TATTTTTTGATACTTACGCCGAGCACTATCGAGACATGCAAGCTTTCCAT
GAGTGGCTCCCAAAGCTGTTGCGACTCGGGGGCATGTACTCCTTTTTCAA
TGGTAAGTGAGTGAGCGGGTTGCGCCGAGTTTTTTAAGGTCGGTAATTAC
TTACGACGATGTCATTCTCCGTTCACTCTCTGTCTCTTTTGTGCTGTGCT
TTTCTTTCCTCTTCTACCCTCTCTCAACCGCCGACACAACCACGACCCAC
ATCTTTCTTTACATCAAATCAGGCCTATGCCCAGACAACCTGTTCTTCCA
CGCCGTTACTTGCCAGCTGGTCAAGCTAGAGCTGGAGGCTTTGAATTTTG
TGGTGAACTTTGCCACGGTGGAAGTGGAAGGAGGCGCGGCGAAGGAAGGG
ACCTGGGAAGGGCTACGACGTAAATACTGGCATGGACGAGAGGAGTACTA
TTTGCCTGGTGAGCGCACGCTCTCTCATCTCATTTTCCTCGTAAATCAAC
ATTTAATTTGATTGTCAAAGATTCCATATATGCCTGACCTCACTTTCCTC
GCCCACTTACTCCTATTCTTGATTCGTTCCTTCCCCTCTCTCAGTGGCTA
TCTTTCAAGGTAAAGGCGCAGACGTGGGAAAGGACGAAATGGAGCCAGCA
CGAGGCGAGACGCCAAGAGAGAACTCCACAAACGACAATGAAACGGCCGA
CGACACTTTAGTGGGTGAGGCCCAAGTCGGCGAGGAGAAGACAGTCGAAG
TCCTACTTCATGCTGCCCTCGATCCTGAGGCTGGTGGCCTGACCTGGCGG
CCATACCCGGACATGAGAGGACGTCTCGATAACGTCTGCCTCCTTCAGCT
CCGATGTTGGTTTCCCCCTATGTTGCATGATGCCCATCGACATACTATCT
TTCGGCGGGCAATTCAAGGGGCGGTTCATAAAGTGCAACGCCAAGACTCA
CGACAGCTTCTGCTACAGCAGCAGCAGCAGCAGCGGGGGCAGGAAAGAGG
AGGGAGGGAGGTCCGGGCGCTGGACATCGGTACAGGCACCTCT

Coding sequence (CDS) from alignment at scaffold_15:607025..608817+

>mRNA_6430 ID=mRNA_6430|Name=jgi.p|Nanoce1779_2|594987|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_15:607025..608817+ (Nannochloropsis oceanica)
ATGACCACCATGACTGCCGGGGACCATCAAGCATTCTTAGCGGCATGCGG
GGCAGGGGACCTAGGGAAAGTGAAGGTGTTTCTCGCAGCCGGTTTGCCAG
CGTATCACCAAGAGGAGGAGGGCGGCACGTCGTTACTTATGCACGCCGCT
AAGGGCGCCCACCTCGAAGTGGTGCAAGCATTGCTAGAAGCAGGGGCGCC
TTGGATGGCGTTGGATCGGCAGGGTAAATGTGCGGGGGAGTACGCCATGG
CCAGTGAGGTGGAGGACGCGGAGCGAAAGCAATCCGTCATTGATACTTTG
GTTAATCATGCGGTCATGGCCGAGATGATATTAGGGACGATGCAAAACCA
GGCAGCTGAAGCTGTGCGCAAGGAGCAACAGCAAGAATCCGCACAATACC
TGGGGGGGAACGTACGCTACGAGAAGGACCGCTTGGTGGATGAGACGGAG
GAAGGGGTGATGATGGAGTGGGAAGCACCACTTATGGAGGCGCACGCCAG
CTTGCTGTGCGGGGAAGCCAAGAACAGAGATGTGATGAATGTCGGCTTTG
GGATGGGCATTATCGACGAGGCAATTCAACGGCATGGATGTCGATCTCAC
ACCATCCTTGAGGCGCATCCAACCGTGCTGGAGAAGATGGAAGCGGAGGG
CTGGACACAGAAGGCTGGCGTGACGGTCGAAAGGGGACGTTGGCAAGAGA
CCTTGCCTCGGCTTGTGGCGGCGGGCAAGAAATACGATGCCTTATTTTTT
GATACTTACGCCGAGCACTATCGAGACATGCAAGCTTTCCATGAGTGGCT
CCCAAAGCTGTTGCGACTCGGGGGCATGTACTCCTTTTTCAATGGCCTAT
GCCCAGACAACCTGTTCTTCCACGCCGTTACTTGCCAGCTGGTCAAGCTA
GAGCTGGAGGCTTTGAATTTTGTGGTGAACTTTGCCACGGTGGAAGTGGA
AGGAGGCGCGGCGAAGGAAGGGACCTGGGAAGGGCTACGACGTAAATACT
GGCATGGACGAGAGGAGTACTATTTGCCTGGTGAGCGCACGCTCTCTCAT
CTCATTTTCCTCGTAAATCAACATTTAATTTGAATGACCACCATGACTGC
CGGGGACCATCAAGCATTCTTAGCGGCATGCGGGGCAGGGGACCTAGGGA
AAGTGAAGGTGTTTCTCGCAGCCGGTTTGCCAGCGTATCACCAAGAGGAG
GAGGGCGGCACGTCGTTACTTATGCACGCCGCTAAGGGCGCCCACCTCGA
AGTGGTGCAAGCATTGCTAGAAGCAGGGGCGCCTTGGATGGCGTTGGATC
GGCAGGGTAAATGTGCGGGGGAGTACGCCATGGCCAGTGAGGTGGAGGAC
GCGGAGCGAAAGCAATCCGTCATTGATACTTTGGTTAATCATGCGGTCAT
GGCCGAGATGATATTAGGGACGATGCAAAACCAGGCAGCTGAAGCTGTGC
GCAAGGAGCAACAGCAAGAATCCGCACAATACCTGGGGGGGAACGTACGC
TACGAGAAGGACCGCTTGGTGGATGAGACGGAGGAAGGGGTGATGATGGA
GTGGGAAGCACCACTTATGGAGGCGCACGCCAGCTTGCTGTGCGGGGAAG
CCAAGAACAGAGATGTGATGAATGTCGGCTTTGGGATGGGCATTATCGAC
GAGGCAATTCAACGGCATGGATGTCGATCTCACACCATCCTTGAGGCGCA
TCCAACCGTGCTGGAGAAGATGGAAGCGGAGGGCTGGACACAGAAGGCTG
GCGTGACGGTCGAAAGGGGACGTTGGCAAGAGACCTTGCCTCGGCTTGTG
GCGGCGGGCAAGAAATACGATGCCTTATTTTTTGATACTTACGCCGAGCA
CTATCGAGACATGCAAGCTTTCCATGAGTGGCTCCCAAAGCTGTTGCGAC
TCGGGGGCATGTACTCCTTTTTCAATGGCCTATGCCCAGACAACCTGTTC
TTCCACGCCGTTACTTGCCAGCTGGTCAAGCTAGAGCTGGAGGCTTTGAA
TTTTGTGGTGAACTTTGCCACGGTGGAAGTGGAAGGAGGCGCGGCGAAGG
AAGGGACCTGGGAAGGGCTACGACGTAAATACTGGCATGGACGAGAGGAG
TACTATTTGCCTGGTGAGCGCACGCTCTCTCATCTCATTTTCCTCGTAAA
TCAACATTTAATTTGA

Synonyms

Publications