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Properties
| Property Name | Value |
|---|
| TranscriptId | 595071 |
| Track | FilteredModels2 |
| ProteinId | 594985 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:604752..606542 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6429 ID=mRNA_6429|Name=jgi.p|Nanoce1779_2|594985|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
TATGCCTGCCGTTTCTACTCCATTGGCCCAAAGACTGCGGGTGGTGACGT
ACAACATCCTCACGCCCAACTACGCCACCCCCAGGGACTTGCCGGCCCAC
CCAGCCGTGCATCTGAATGAGCAAGAGCGTCTGCAAAAAATCCTGACTAA
GCTTAAGGCAGAGACTGTACAAGGTTCAGTCATTGCTCTTCAGGAGATCT
CCCGAGCCTGGGCAGGCCACTTGCACGTATTTTTTGCGCGAGAGGGTTAT
CACTTCGTCCACTCTGGGTATGGACGCCCCTCAAGTGGGTTCATGGGTGT
GGGTCTTGCCTGGCCACATAGCACCCTTAAGGCCACCACTGTTGACATTT
CTCGCCTTGCCGACGCCAAGCCCTGGCCCGCACCGCCCCCGCCCGGTGCC
CTCACCTCCCTCTCCCGCGGCCTCCTGAGGCCCTTTCGACGCTTGCTCGG
AACGCGTGGCCGTGGGAACGGCAAGGACGAAGATGTCATGGCTGCGGCTC
GCGACCGTTCGAACACTGTCGTCATGGCACAGCTCCGTAGCAAGGAGTCG
GAAGGATTGGATTTTTTTATTGCTTGTTATCACATGCCGTGTGAGTTCCG
CCGACCACCCATCATGACGGTGCACGCCGCTCTTCTTGTGCAGCGGTTGC
AGGCCCTTGCGCAGGGAAAGCCGCACATCGTAACGGGTGACTTTAATTTC
CAACCCACGTGGCCGCAGTACCAGCTCATCACGGAGGGCGAAATGCCCAC
CGAGCACGCCCACTACCCGCCCATGCCTCCCACCGACCCGTGGACCCCCC
GCGTAGAGCAACCACTTAAGTCGGCCTTAAAAGTCAAGTGGGGGCAAGAG
CCAGACTTTACCTGTCATTCTTACGCGGACCGGGAGACGGGCGAGCGGTT
TTGCGAGCCATTGGACTACATCTTTTTGTCGCCAGAGTGGAGAGTGGTCG
ATGCCGTTCAACTTCAGAGCAAAAAAGATGCCCTCAACTTGCCCTGCCCT
TTTCCTGATCAGGACGAGCCGTCGGATCATGTCATGCTGTGGGCGGACTT
GAGCCTGGAAAAATAACAGCCCAGGCGTGTGGAAGGTTGTTTAATCTGAA
GAGAGGGGCAAAGAGATATAAATGTCGCGAAAAAGAACCAAAGCATGGTA
CTCATTAAGTATTATATTCAGACAATATTTCAAT back to topprotein sequence of jgi.p|Nanoce1779_2|594985 >mRNA_6429-protein ID=mRNA_6429-protein|Name=jgi.p|Nanoce1779_2|594985|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MPAVSTPLAQRLRVVTYNILTPNYATPRDLPAHPAVHLNEQERLQKILTK
LKAETVQGSVIALQEISRAWAGHLHVFFAREGYHFVHSGYGRPSSGFMGV
GLAWPHSTLKATTVDISRLADAKPWPAPPPPGALTSLSRGLLRPFRRLLG
TRGRGNGKDEDVMAAARDRSNTVVMAQLRSKESEGLDFFIACYHMPCEFR
RPPIMTVHAALLVQRLQALAQGKPHIVTGDFNFQPTWPQYQLITEGEMPT
EHAHYPPMPPTDPWTPRVEQPLKSALKVKWGQEPDFTCHSYADRETGERF
CEPLDYIFLSPEWRVVDAVQLQSKKDALNLPCPFPDQDEPSDHVMLWADL
SLEK* back to topmRNA from alignment at scaffold_15:604752..606542+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6429 ID=mRNA_6429|Name=jgi.p|Nanoce1779_2|594985|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_15:604752..606542+ (Nannochloropsis oceanica)
TATGCCTGCCGTTTCTACTCCATTGGCCCAAAGACTGCGGGTGGTGACGT
ACAACATCCTCACGCCCAACTACGCCACCCCCAGGGACTTGCCGGTGCGT
ATTTCCTTCTTACTCATTACCTTCGAATCTTACCTCCGTGCTTTTTTCTC
ATGATGCGTTATGCCACAACTTGTATACGTAAGAATCGTTCATCACTTCC
GCCGGGCACTTTACTCGCGCTTTCGTATCCCCTTCGCTTCTTTGATTCTT
CCTGCCTCCCATTCTCTTTCTACAGGCCCACCCAGCCGTGCATCTGAATG
AGCAAGAGCGTCTGCAAAAAATCCTGACTAAGCTTAAGGCAGAGACTGTA
CAAGGTTCAGTCATTGCTCTTCAGGAGATCTCCCGAGCCTGGGCAGGCCA
CTTGCACGTATTTTTTGCGCGAGAGGGTTATCACTTCGTCCACTCTGGGT
ATGGACGCCCCTCAAGTGGGTTCATGGGTGTGGGTCTTGCCTGGCCACAT
AGCACCCTTAAGGCCACCACTGTTGACATTTCTCGCCTTGCCGACGCCAA
GCCCTGGCCCGCACCGCCCCCGCCCGGTGCCCTCACCTCCCTCTCCCGCG
GCCTCCTGAGGCCCTTTCGACGCTTGCTCGGAACGCGTGGCCGTGGGAAC
GGCAAGGACGAAGATGTCATGGCTGCGGCTCGCGACCGTTCGAACACTGT
CGTCATGGCACAGCTCCGTAGCAAGGAGTCGGAAGGATTGGATTTTTTTA
TTGCTTGTTATCACATGCCGTGTGAGTTCCGCCGACCACCCATCATGACG
GTGCACGCCGCTCTTCTTGTGCAGCGGTTGCAGGCCCTTGCGCAGGGAAA
GCCGCACATCGTAACGGTATGTATAAATAAGTACGGAAAAGGGGGGGGAG
AAAGGGAAAAGAGGTGGTGGTCGAAGATGCTCAGAGAAAGAATTGGAATG
AGGATTTGCGTTCCCTGTCTCTCTTTCTCCCATCATCAACTCCTTCACCT
CCCCTCACCTCCACTCTCCCCATTTGCACACAGGGTGACTTTAATTTCCA
ACCCACGTGGCCGCAGTACCAGCTCATCACGGAGGGCGAAATGCCCACCG
AGCACGCCCACTACCCGCCCATGCCTCCCACCGACCCGTGGACCCCCCGC
GTAGAGCAACCACTTAAGTCGGCCTTAAAAGTCAAGTGGGGGCAAGAGCC
AGACTTTACCTGTCATTCTTACGCGGACCGGGTACGTTAATGAGGAAGGA
AGGGGGTGTTGAAGCAGGAGGGAACGAGGGGAGAAAGGGGAGAGCGAGGC
CCATCCATGACACTCATTTTACCCGGTCCAATGTAACGCACACCGACATA
CACACACCAGGAGACGGGCGAGCGGTTTTGCGAGCCATTGGACTACATCT
TTTTGTCGCCAGAGTGGAGAGTGGTCGATGCCGTTCAACTTCAGAGCAAA
AAAGATGCCCTCAACTTGCCCTGCCCTTTTCCTGATCAGGTAGGCAAGGG
AGGAAGGGAAGCTTGGGGAAGAGAGTGGACGGGTAGAATGAGCTCGAGGA
GACAAGGATGCGTGAACATTTAGAAATACGATCTCATTCGGTCATATATA
TCGATTTCATTTTCTACAGGACGAGCCGTCGGATCATGTCATGCTGTGGG
CGGACTTGAGCCTGGAAAAATAACAGCCCAGGCGTGTGGAAGGTTGTTTA
ATCTGAAGAGAGGGGCAAAGAGATATAAATGTCGCGAAAAAGAACCAAAG
CATGGTACTCATTAAGTATTATATTCAGACAATATTTCAAT back to topCoding sequence (CDS) from alignment at scaffold_15:604752..606542+ >mRNA_6429 ID=mRNA_6429|Name=jgi.p|Nanoce1779_2|594985|organism=Nannochloropsis oceanica|type=CDS|length=5325bp|location=Sequence derived from alignment at scaffold_15:604752..606542+ (Nannochloropsis oceanica)
ATGCCTGCCGTTTCTACTCCATTGGCCCAAAGACTGCGGGTGGTGACGTA
CAACATCCTCACGCCCAACTACGCCACCCCCAGGGACTTGCCGGCCCACC
CAGCCGTGCATCTGAATGAGCAAGAGCGTCTGCAAAAAATCCTGACTAAG
CTTAAGGCAGAGACTGTACAAGGTTCAGTCATTGCTCTTCAGGAGATCTC
CCGAGCCTGGGCAGGCCACTTGCACGTATTTTTTGCGCGAGAGGGTTATC
ACTTCGTCCACTCTGGGTATGGACGCCCCTCAAGTGGGTTCATGGGTGTG
GGTCTTGCCTGGCCACATAGCACCCTTAAGGCCACCACTGTTGACATTTC
TCGCCTTGCCGACGCCAAGCCCTGGCCCGCACCGCCCCCGCCCGGTGCCC
TCACCTCCCTCTCCCGCGGCCTCCTGAGGCCCTTTCGACGCTTGCTCGGA
ACGCGTGGCCGTGGGAACGGCAAGGACGAAGATGTCATGGCTGCGGCTCG
CGACCGTTCGAACACTGTCGTCATGGCACAGCTCCGTAGCAAGGAGTCGG
AAGGATTGGATTTTTTTATTGCTTGTTATCACATGCCGTGTGAGTTCCGC
CGACCACCCATCATGACGGTGCACGCCGCTCTTCTTGTGCAGCGGTTGCA
GGCCCTTGCGCAGGGAAAGCCGCACATCGTAACGGGTGACTTTAATTTCC
AACCCACGTGGCCGCAGTACCAGCTCATCACGGAGGGCGAAATGCCCACC
GAGCACGCCCACTACCCGCCCATGCCTCCCACCGACCCGTGGACCCCCCG
CGTAGAGCAACCACTTAAGTCGGCCTTAAAAGTCAAGTGGGGGCAAGAGC
CAGACTTTACCTGTCATTCTTACGCGGACCGGGAGACGGGCGAGCGGTTT
TGCGAGCCATTGGACTACATCTTTTTGTCGCCAGAGTGGAGAGTGGTCGA
TGCCGTTCAACTTCAGAGCAAAAAAGATGCCCTCAACTTGCCCTGCCCTT
TTCCTGATCAGGACGAGCCGTCGGATCATGTCATGCTGTGGGCGGACTTG
AGCCTGGAAAAATAAATGCCTGCCGTTTCTACTCCATTGGCCCAAAGACT
GCGGGTGGTGACGTACAACATCCTCACGCCCAACTACGCCACCCCCAGGG
ACTTGCCGGCCCACCCAGCCGTGCATCTGAATGAGCAAGAGCGTCTGCAA
AAAATCCTGACTAAGCTTAAGGCAGAGACTGTACAAGGTTCAGTCATTGC
TCTTCAGGAGATCTCCCGAGCCTGGGCAGGCCACTTGCACGTATTTTTTG
CGCGAGAGGGTTATCACTTCGTCCACTCTGGGTATGGACGCCCCTCAAGT
GGGTTCATGGGTGTGGGTCTTGCCTGGCCACATAGCACCCTTAAGGCCAC
CACTGTTGACATTTCTCGCCTTGCCGACGCCAAGCCCTGGCCCGCACCGC
CCCCGCCCGGTGCCCTCACCTCCCTCTCCCGCGGCCTCCTGAGGCCCTTT
CGACGCTTGCTCGGAACGCGTGGCCGTGGGAACGGCAAGGACGAAGATGT
CATGGCTGCGGCTCGCGACCGTTCGAACACTGTCGTCATGGCACAGCTCC
GTAGCAAGGAGTCGGAAGGATTGGATTTTTTTATTGCTTGTTATCACATG
CCGTGTGAGTTCCGCCGACCACCCATCATGACGGTGCACGCCGCTCTTCT
TGTGCAGCGGTTGCAGGCCCTTGCGCAGGGAAAGCCGCACATCGTAACGG
GTGACTTTAATTTCCAACCCACGTGGCCGCAGTACCAGCTCATCACGGAG
GGCGAAATGCCCACCGAGCACGCCCACTACCCGCCCATGCCTCCCACCGA
CCCGTGGACCCCCCGCGTAGAGCAACCACTTAAGTCGGCCTTAAAAGTCA
AGTGGGGGCAAGAGCCAGACTTTACCTGTCATTCTTACGCGGACCGGGAG
ACGGGCGAGCGGTTTTGCGAGCCATTGGACTACATCTTTTTGTCGCCAGA
GTGGAGAGTGGTCGATGCCGTTCAACTTCAGAGCAAAAAAGATGCCCTCA
ACTTGCCCTGCCCTTTTCCTGATCAGGACGAGCCGTCGGATCATGTCATG
CTGTGGGCGGACTTGAGCCTGGAAAAATAAATGCCTGCCGTTTCTACTCC
ATTGGCCCAAAGACTGCGGGTGGTGACGTACAACATCCTCACGCCCAACT
ACGCCACCCCCAGGGACTTGCCGGCCCACCCAGCCGTGCATCTGAATGAG
CAAGAGCGTCTGCAAAAAATCCTGACTAAGCTTAAGGCAGAGACTGTACA
AGGTTCAGTCATTGCTCTTCAGGAGATCTCCCGAGCCTGGGCAGGCCACT
TGCACGTATTTTTTGCGCGAGAGGGTTATCACTTCGTCCACTCTGGGTAT
GGACGCCCCTCAAGTGGGTTCATGGGTGTGGGTCTTGCCTGGCCACATAG
CACCCTTAAGGCCACCACTGTTGACATTTCTCGCCTTGCCGACGCCAAGC
CCTGGCCCGCACCGCCCCCGCCCGGTGCCCTCACCTCCCTCTCCCGCGGC
CTCCTGAGGCCCTTTCGACGCTTGCTCGGAACGCGTGGCCGTGGGAACGG
CAAGGACGAAGATGTCATGGCTGCGGCTCGCGACCGTTCGAACACTGTCG
TCATGGCACAGCTCCGTAGCAAGGAGTCGGAAGGATTGGATTTTTTTATT
GCTTGTTATCACATGCCGTGTGAGTTCCGCCGACCACCCATCATGACGGT
GCACGCCGCTCTTCTTGTGCAGCGGTTGCAGGCCCTTGCGCAGGGAAAGC
CGCACATCGTAACGGGTGACTTTAATTTCCAACCCACGTGGCCGCAGTAC
CAGCTCATCACGGAGGGCGAAATGCCCACCGAGCACGCCCACTACCCGCC
CATGCCTCCCACCGACCCGTGGACCCCCCGCGTAGAGCAACCACTTAAGT
CGGCCTTAAAAGTCAAGTGGGGGCAAGAGCCAGACTTTACCTGTCATTCT
TACGCGGACCGGGAGACGGGCGAGCGGTTTTGCGAGCCATTGGACTACAT
CTTTTTGTCGCCAGAGTGGAGAGTGGTCGATGCCGTTCAACTTCAGAGCA
AAAAAGATGCCCTCAACTTGCCCTGCCCTTTTCCTGATCAGGACGAGCCG
TCGGATCATGTCATGCTGTGGGCGGACTTGAGCCTGGAAAAATAAATGCC
TGCCGTTTCTACTCCATTGGCCCAAAGACTGCGGGTGGTGACGTACAACA
TCCTCACGCCCAACTACGCCACCCCCAGGGACTTGCCGGCCCACCCAGCC
GTGCATCTGAATGAGCAAGAGCGTCTGCAAAAAATCCTGACTAAGCTTAA
GGCAGAGACTGTACAAGGTTCAGTCATTGCTCTTCAGGAGATCTCCCGAG
CCTGGGCAGGCCACTTGCACGTATTTTTTGCGCGAGAGGGTTATCACTTC
GTCCACTCTGGGTATGGACGCCCCTCAAGTGGGTTCATGGGTGTGGGTCT
TGCCTGGCCACATAGCACCCTTAAGGCCACCACTGTTGACATTTCTCGCC
TTGCCGACGCCAAGCCCTGGCCCGCACCGCCCCCGCCCGGTGCCCTCACC
TCCCTCTCCCGCGGCCTCCTGAGGCCCTTTCGACGCTTGCTCGGAACGCG
TGGCCGTGGGAACGGCAAGGACGAAGATGTCATGGCTGCGGCTCGCGACC
GTTCGAACACTGTCGTCATGGCACAGCTCCGTAGCAAGGAGTCGGAAGGA
TTGGATTTTTTTATTGCTTGTTATCACATGCCGTGTGAGTTCCGCCGACC
ACCCATCATGACGGTGCACGCCGCTCTTCTTGTGCAGCGGTTGCAGGCCC
TTGCGCAGGGAAAGCCGCACATCGTAACGGGTGACTTTAATTTCCAACCC
ACGTGGCCGCAGTACCAGCTCATCACGGAGGGCGAAATGCCCACCGAGCA
CGCCCACTACCCGCCCATGCCTCCCACCGACCCGTGGACCCCCCGCGTAG
AGCAACCACTTAAGTCGGCCTTAAAAGTCAAGTGGGGGCAAGAGCCAGAC
TTTACCTGTCATTCTTACGCGGACCGGGAGACGGGCGAGCGGTTTTGCGA
GCCATTGGACTACATCTTTTTGTCGCCAGAGTGGAGAGTGGTCGATGCCG
TTCAACTTCAGAGCAAAAAAGATGCCCTCAACTTGCCCTGCCCTTTTCCT
GATCAGGACGAGCCGTCGGATCATGTCATGCTGTGGGCGGACTTGAGCCT
GGAAAAATAAATGCCTGCCGTTTCTACTCCATTGGCCCAAAGACTGCGGG
TGGTGACGTACAACATCCTCACGCCCAACTACGCCACCCCCAGGGACTTG
CCGGCCCACCCAGCCGTGCATCTGAATGAGCAAGAGCGTCTGCAAAAAAT
CCTGACTAAGCTTAAGGCAGAGACTGTACAAGGTTCAGTCATTGCTCTTC
AGGAGATCTCCCGAGCCTGGGCAGGCCACTTGCACGTATTTTTTGCGCGA
GAGGGTTATCACTTCGTCCACTCTGGGTATGGACGCCCCTCAAGTGGGTT
CATGGGTGTGGGTCTTGCCTGGCCACATAGCACCCTTAAGGCCACCACTG
TTGACATTTCTCGCCTTGCCGACGCCAAGCCCTGGCCCGCACCGCCCCCG
CCCGGTGCCCTCACCTCCCTCTCCCGCGGCCTCCTGAGGCCCTTTCGACG
CTTGCTCGGAACGCGTGGCCGTGGGAACGGCAAGGACGAAGATGTCATGG
CTGCGGCTCGCGACCGTTCGAACACTGTCGTCATGGCACAGCTCCGTAGC
AAGGAGTCGGAAGGATTGGATTTTTTTATTGCTTGTTATCACATGCCGTG
TGAGTTCCGCCGACCACCCATCATGACGGTGCACGCCGCTCTTCTTGTGC
AGCGGTTGCAGGCCCTTGCGCAGGGAAAGCCGCACATCGTAACGGGTGAC
TTTAATTTCCAACCCACGTGGCCGCAGTACCAGCTCATCACGGAGGGCGA
AATGCCCACCGAGCACGCCCACTACCCGCCCATGCCTCCCACCGACCCGT
GGACCCCCCGCGTAGAGCAACCACTTAAGTCGGCCTTAAAAGTCAAGTGG
GGGCAAGAGCCAGACTTTACCTGTCATTCTTACGCGGACCGGGAGACGGG
CGAGCGGTTTTGCGAGCCATTGGACTACATCTTTTTGTCGCCAGAGTGGA
GAGTGGTCGATGCCGTTCAACTTCAGAGCAAAAAAGATGCCCTCAACTTG
CCCTGCCCTTTTCCTGATCAGGACGAGCCGTCGGATCATGTCATGCTGTG
GGCGGACTTGAGCCTGGAAAAATAA back to top
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