jgi.p|Nanoce1779_2|594974, mRNA_6428 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594974
Unique NamemRNA_6428
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length588
Alignment locationscaffold_15:603583..604170 -

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Properties
Property NameValue
TranscriptId595060
TrackFilteredModels2
ProteinId594974
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:603583..604170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594974gene_6428Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594974mRNA_6428-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6428CDS_6428Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6428 ID=mRNA_6428|Name=jgi.p|Nanoce1779_2|594974|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ACAGACGTCAGCGACAACGAGGACGACAATGCATGGTGTCACCCTCGTGG
CCCTGGCCCGCGGTGTCACCCGACAAGCCGCAAATCTCTTGCCTCGCACC
GCCGTCATCACGACCTCTGTCCTTCCCGGACTACGCCCTTTGTCCACCGC
TGCCGCCAGTTTTGAGGGTACCACCGCTCCGATACCTCAGTCTAATTTGC
GACATGCCGTGTTCTCGCTCATCCACGGGGCAAAAGGCAAGCCACTACAC
AATCGCGAAATCTTCAAAGCATTGCAAGAGACGCTTCCGCCGACATCACC
GCTAAAGGAGCGCCTAACACTAACCTTTCTGAAGACCAAAGTCCTGCGAC
AACTACGGGAGAAGAGCCATATTCGGTCCGTGGCAGTCTGGACCGAGGGC
AAGAAGCGGGCCTCGTACGGTTATGTGGTATCAAAGCTGCCAAAGGAGTA
CAAGACGACGAAGCCTATTGCAGAGGTAGTGACGGAAGCAAAGGAGAGTA
AATAGACTTACAGTACACCCTCTATAAAAGGAGAAAATCAGCGAAACAGA
ACTTGAAGAAAACATGCGAATGCATATAGTTCGTGTAT
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protein sequence of jgi.p|Nanoce1779_2|594974

>mRNA_6428-protein ID=mRNA_6428-protein|Name=jgi.p|Nanoce1779_2|594974|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MHGVTLVALARGVTRQAANLLPRTAVITTSVLPGLRPLSTAAASFEGTTA
PIPQSNLRHAVFSLIHGAKGKPLHNREIFKALQETLPPTSPLKERLTLTF
LKTKVLRQLREKSHIRSVAVWTEGKKRASYGYVVSKLPKEYKTTKPIAEV
VTEAKES
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mRNA from alignment at scaffold_15:603583..604170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6428 ID=mRNA_6428|Name=jgi.p|Nanoce1779_2|594974|organism=Nannochloropsis oceanica|type=mRNA|length=588bp|location=Sequence derived from alignment at scaffold_15:603583..604170- (Nannochloropsis oceanica)
ACAGACGTCAGCGACAACGAGGACGACAATGCATGGTGTCACCCTCGTGG
CCCTGGCCCGCGGTGTCACCCGACAAGCCGCAAATCTCTTGCCTCGCACC
GCCGTCATCACGACCTCTGTCCTTCCCGGACTACGCCCTTTGTCCACCGC
TGCCGCCAGTTTTGAGGGTACCACCGCTCCGATACCTCAGTCTAATTTGC
GACATGCCGTGTTCTCGCTCATCCACGGGGCAAAAGGCAAGCCACTACAC
AATCGCGAAATCTTCAAAGCATTGCAAGAGACGCTTCCGCCGACATCACC
GCTAAAGGAGCGCCTAACACTAACCTTTCTGAAGACCAAAGTCCTGCGAC
AACTACGGGAGAAGAGCCATATTCGGTCCGTGGCAGTCTGGACCGAGGGC
AAGAAGCGGGCCTCGTACGGTTATGTGGTATCAAAGCTGCCAAAGGAGTA
CAAGACGACGAAGCCTATTGCAGAGGTAGTGACGGAAGCAAAGGAGAGTA
AATAGACTTACAGTACACCCTCTATAAAAGGAGAAAATCAGCGAAACAGA
ACTTGAAGAAAACATGCGAATGCATATAGTTCGTGTAT
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Coding sequence (CDS) from alignment at scaffold_15:603583..604170-

>mRNA_6428 ID=mRNA_6428|Name=jgi.p|Nanoce1779_2|594974|organism=Nannochloropsis oceanica|type=CDS|length=473bp|location=Sequence derived from alignment at scaffold_15:603583..604170- (Nannochloropsis oceanica)
ATGCATGGTGTCACCCTCGTGGCCCTGGCCCGCGGTGTCACCCGACAAGC
CGCAAATCTCTTGCCTCGCACCGCCGTCATCACGACCTCTGTCCTTCCCG
GACTACGCCCTTTGTCCACCGCTGCCGCCAGTTTTGAGGGTACCACCGCT
CCGATACCTCAGTCTAATTTGCGACATGCCGTGTTCTCGCTCATCCACGG
GGCAAAAGGCAAGCCACTACACAATCGCGAAATCTTCAAAGCATTGCAAG
AGACGCTTCCGCCGACATCACCGCTAAAGGAGCGCCTAACACTAACCTTT
CTGAAGACCAAAGTCCTGCGACAACTACGGGAGAAGAGCCATATTCGGTC
CGTGGCAGTCTGGACCGAGGGCAAGAAGCGGGCCTCGTACGGTTATGTGG
TATCAAAGCTGCCAAAGGAGTACAAGACGACGAAGCCTATTGCAGAGGTA
GTGACGGAAGCAAAGGAGAGTAA
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Synonyms
Publications