jgi.p|Nanoce1779_2|594971, mRNA_6427 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594971
Unique Name	mRNA_6427
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1331
Alignment location	scaffold_15:602054..603582 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595057
Track	FilteredModels2
ProteinId	594971

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:602054..603582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594971	gene_6427	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594971	mRNA_6427-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6427	CDS_6427	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:602054..603582+
coding sequence from alignment at scaffold_15:602054..603582+

mRNA sequence

>mRNA_6427 ID=mRNA_6427|Name=jgi.p|Nanoce1779_2|594971|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp
CAACAACAACAGCACCCCCATCACCAACAGCTGCAGCAGCAGCAGCAGCA
GCAATACGGACACCAGCAGCACCACCAGTACGCACAGCACGCTGCTGCGC
TCTCCCCCTCCTTGGGCCAGGGCCAGCAGCAACAGCAGCTGCAGCCGGTG
CCGGCAGGGATGGAGGGGGAATTCGCTGAATGGGACCCTTTTTTCTTGGA
GCCCCTCGAAGACGACCTGCAGCTCCAGCTACAACAGCACGAGGGTGGTC
GGCCACGAGCAAGCAGCTACGGCAGTAAATCTCCACGCCTCCCTCACAAC
GGCCACGCCGGCAATCTCTACCATCAGTATCAACAACAGCAGCTGCAGCA
GGAGCAGCAGCAACAGCAACATCAGCAGCAGCAGTACTCCAACTCCCACC
ACGGCCCTCCTTCGCCCATCTACCACCAGCAGCAGCTCAACCACACACCC
TCCCACAATACCCCGCCTAAACAACGGTTTGGGGCTTTCTCCTTCCTCCG
AAGTGGCGGTCCTCCACGTCACCAGCATCGCGGGGGGCAAAGCGGGGGCA
TTGGTAGCAGCGGGATGGGTAGCGGTGGCACTGGAGGCGCGGGAGTGTAT
TCCGCCTCGCCTGGCAGCACGGGGAGCGGTGTTACTCGTCCTCGTTCTTC
CTCCTGGCATCCTCAACACGAGCTGGGAGCAGGAAGTGGTGGTGGTGGTA
TTGGTGTGGGAGGGTCAGGAATTGGGGTGCAGAACTTCATGCCTTTGCCG
AGCGGCAATGACCATTCGGCAGTTTGGAGCACGGGAGGTGGTGGTGGTGA
CGGCTGTGGTCCCCCCAACAACAACAGCAGTACTTTGAATCAGCAGCAGC
GTCGTCGGAGTGGAAGCGGAAGCGGGTCGAGCCCCGCGTCGGGAAGTAGT
TGGATGGTGCGACGTGCTGTGAACCCGACCACCGGCCTTTCAACGGAAGC
CTACGGTATGAGCCCTCGGCCACAGGGGGGGATAGGTGGTGGAGGGTCTA
CAGGTGGAATAGGGAAGAAACCACCGGCTTCCCCGCGTGGTGCCCTTGGC
ACCAGTCCTTCGAAAAGGTAGAGGAGTATGGTAGGGACAAAGGAGCATTG
ATGGGGCCACTGGGTTGGATGTTTGTGGTCTATATTTTAGGTAGGATGAC
GCCCACTTATCTCAGCAGTAGAGAGAGAGAGAGAGAGCTAGCAGCTGCTT
GCTCAGTTTGAATGCCAAACACACTCTTGCTGTCGTGACATTGGCTTTTT
TCCCGTCTTTCTTTTCACTCAGTCCTGTTTCAACTCCTACCTTGTAAAGA
AAAAAACTCCTTTCGTCAACAAGTCGTGTAG

protein sequence of jgi.p|Nanoce1779_2|594971

>mRNA_6427-protein ID=mRNA_6427-protein|Name=jgi.p|Nanoce1779_2|594971|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MEGEFAEWDPFFLEPLEDDLQLQLQQHEGGRPRASSYGSKSPRLPHNGHA
GNLYHQYQQQQLQQEQQQQQHQQQQYSNSHHGPPSPIYHQQQLNHTPSHN
TPPKQRFGAFSFLRSGGPPRHQHRGGQSGGIGSSGMGSGGTGGAGVYSAS
PGSTGSGVTRPRSSSWHPQHELGAGSGGGGIGVGGSGIGVQNFMPLPSGN
DHSAVWSTGGGGGDGCGPPNNNSSTLNQQQRRRSGSGSGSSPASGSSWMV
RRAVNPTTGLSTEAYGMSPRPQGGIGGGGSTGGIGKKPPASPRGALGTSP
SKR*

mRNA from alignment at scaffold_15:602054..603582+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6427 ID=mRNA_6427|Name=jgi.p|Nanoce1779_2|594971|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp|location=Sequence derived from alignment at scaffold_15:602054..603582+ (Nannochloropsis oceanica)
CAACAACAACAGCACCCCCATCACCAACAGCTGCAGCAGCAGCAGCAGCA
GCAATACGGACACCAGCAGCACCACCAGTACGCACAGCACGCTGCTGCGC
TCTCCCCCTCCTTGGGCCAGGGCCAGCAGCAACAGCAGCTGCAGCCGGTG
CCGGCAGGGATGGAGGGGGAATTCGCTGAATGGGACCCTTTTTTCTTGGA
GCCCCTCGAAGACGACCTGCAGCTCCAGCTACAACAGCACGAGGGTGGTC
GGCCACGAGCAAGCAGCTACGGCAGTAAATCTCCACGCCTCCCTCACAAC
GGCCACGCCGGCAATCTCTACCATCAGTATCAACAACAGCAGCTGCAGCA
GGAGCAGCAGCAACAGCAACATCAGCAGCAGCAGTACTCCAACTCCCACC
ACGGCCCTCCTTCGCCCATCTACCACCAGCAGCAGCTCAACCACACACCC
TCCCACAATACCCCGCCTAAACAACGGTTTGGGGCTTTCTCCTTCCTCCG
AAGTGGCGGTCCTCCACGTCACCAGCATCGCGGGGGGCAAAGCGGGGGCA
TTGGTAGCAGCGGGATGGGTAGCGGTGGCACTGGAGGCGCGGGAGTGTAT
TCCGCCTCGCCTGGCAGCACGGGGAGCGGTGTTACTCGTCCTCGTTCTTC
CTCCTGGCATCCTCAACACGAGCTGGGAGCAGGAAGTGGTGGTGGTGGTA
TTGGTGTGGGAGGGTCAGGAATTGGGGTGCAGAACTTCATGCCTTTGCCG
AGCGGCAATGACCATTCGGCAGTTTGGAGCACGGGAGGTGGTGGTGGTGA
CGGCTGTGGTCCCCCCAACAACAACAGCAGTACTTTGAATCAGCAGCAGC
GTCGTCGGAGTGGAAGCGGAAGCGGGTCGAGCCCCGCGTCGGGAAGTAGT
TGGATGGTGCGACGTGCTGTGAACCCGACCACCGGCCTTTCAACGGAAGC
CTACGGTATGAGCCCTCGGCCACAGGGGGGGATAGGTGGTGGAGGGTCTA
CAGGTGGAATAGGGAAGAAACCACCGGCTTCCCCGCGTGGTGCCCTTGGC
ACCAGTCCTTCGAAAAGGTAGAGGAGTATGGTAGGGACAAAGGATAGTTG
GATGGTGCGACGTGCTGTGAACCCGACCACCGGCCTTTCAACGGAAGCCT
ACGGCATGAGCCCTCGGCCACAGGGGGGGATAGGTGGTGGAGGGTCTACA
GGTGGAATAGGGAAGAAACCACCGGCTTCCCCGCGTGGAGCCCTTGGCAC
CAGTCCTTCGAAAAGGTAGAGGAGTATGGTAGGGACAAAGGAGCATTGAT
GGGGCCACTGGGTTGGATGTTTGTGGTCTATATTTTAGGTAGGATGACGC
CCACTTATCTCAGCAGTAGAGAGAGAGAGAGAGAGCTAGCAGCTGCTTGC
TCAGTTTGAATGCCAAACACACTCTTGCTGTCGTGACATTGGCTTTTTTC
CCGTCTTTCTTTTCACTCAGTCCTGTTTCAACTCCTACCTTGTAAAGAAA
AAAACTCCTTTCGTCAACAAGTCGTGTAG

Coding sequence (CDS) from alignment at scaffold_15:602054..603582+

>mRNA_6427 ID=mRNA_6427|Name=jgi.p|Nanoce1779_2|594971|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_15:602054..603582+ (Nannochloropsis oceanica)
ATGGAGGGGGAATTCGCTGAATGGGACCCTTTTTTCTTGGAGCCCCTCGA
AGACGACCTGCAGCTCCAGCTACAACAGCACGAGGGTGGTCGGCCACGAG
CAAGCAGCTACGGCAGTAAATCTCCACGCCTCCCTCACAACGGCCACGCC
GGCAATCTCTACCATCAGTATCAACAACAGCAGCTGCAGCAGGAGCAGCA
GCAACAGCAACATCAGCAGCAGCAGTACTCCAACTCCCACCACGGCCCTC
CTTCGCCCATCTACCACCAGCAGCAGCTCAACCACACACCCTCCCACAAT
ACCCCGCCTAAACAACGGTTTGGGGCTTTCTCCTTCCTCCGAAGTGGCGG
TCCTCCACGTCACCAGCATCGCGGGGGGCAAAGCGGGGGCATTGGTAGCA
GCGGGATGGGTAGCGGTGGCACTGGAGGCGCGGGAGTGTATTCCGCCTCG
CCTGGCAGCACGGGGAGCGGTGTTACTCGTCCTCGTTCTTCCTCCTGGCA
TCCTCAACACGAGCTGGGAGCAGGAAGTGGTGGTGGTGGTATTGGTGTGG
GAGGGTCAGGAATTGGGGTGCAGAACTTCATGCCTTTGCCGAGCGGCAAT
GACCATTCGGCAGTTTGGAGCACGGGAGGTGGTGGTGGTGACGGCTGTGG
TCCCCCCAACAACAACAGCAGTACTTTGAATCAGCAGCAGCGTCGTCGGA
GTGGAAGCGGAAGCGGGTCGAGCCCCGCGTCGGGAAGTAGTTGGATGGTG
CGACGTGCTGTGAACCCGACCACCGGCCTTTCAACGGAAGCCTACGGTAT
GAGCCCTCGGCCACAGGGGGGGATAGGTGGTGGAGGGTCTACAGGTGGAA
TAGGGAAGAAACCACCGGCTTCCCCGCGTGGTGCCCTTGGCACCAGTCCT
TCGAAAAGGTAGATGGAGGGGGAATTCGCTGAATGGGACCCTTTTTTCTT
GGAGCCCCTCGAAGACGACCTGCAGCTCCAGCTACAACAGCACGAGGGTG
GTCGGCCACGAGCAAGCAGCTACGGCAGTAAATCTCCACGCCTCCCTCAC
AACGGCCACGCCGGCAATCTCTACCATCAGTATCAACAACAGCAGCTGCA
GCAGGAGCAGCAGCAACAGCAACATCAGCAGCAGCAGTACTCCAACTCCC
ACCACGGCCCTCCTTCGCCCATCTACCACCAGCAGCAGCTCAACCACACA
CCCTCCCACAATACCCCGCCTAAACAACGGTTTGGGGCTTTCTCCTTCCT
CCGAAGTGGCGGTCCTCCACGTCACCAGCATCGCGGGGGGCAAAGCGGGG
GCATTGGTAGCAGCGGGATGGGTAGCGGTGGCACTGGAGGCGCGGGAGTG
TATTCCGCCTCGCCTGGCAGCACGGGGAGCGGTGTTACTCGTCCTCGTTC
TTCCTCCTGGCATCCTCAACACGAGCTGGGAGCAGGAAGTGGTGGTGGTG
GTATTGGTGTGGGAGGGTCAGGAATTGGGGTGCAGAACTTCATGCCTTTG
CCGAGCGGCAATGACCATTCGGCAGTTTGGAGCACGGGAGGTGGTGGTGG
TGACGGCTGTGGTCCCCCCAACAACAACAGCAGTACTTTGAATCAGCAGC
AGCGTCGTCGGAGTGGAAGCGGAAGCGGGTCGAGCCCCGCGTCGGGAAGT
AGTTGGATGGTGCGACGTGCTGTGAACCCGACCACCGGCCTTTCAACGGA
AGCCTACGGTATGAGCCCTCGGCCACAGGGGGGGATAGGTGGTGGAGGGT
CTACAGGTGGAATAGGGAAGAAACCACCGGCTTCCCCGCGTGGTGCCCTT
GGCACCAGTCCTTCGAAAAGGTAG

Synonyms

Publications