jgi.p|Nanoce1779_2|594969, mRNA_6426 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594969
Unique NamemRNA_6426
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length517
Alignment locationscaffold_15:601652..602168 -

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Properties
Property NameValue
TranscriptId595055
TrackFilteredModels2
ProteinId594969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:601652..602168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594969gene_6426Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594969mRNA_6426-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6426CDS_6426Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6426 ID=mRNA_6426|Name=jgi.p|Nanoce1779_2|594969|organism=Nannochloropsis oceanica|type=mRNA|length=517bp
CCAAGGAGGGGGAGAGCGCAGCAGCGTGCTGTGCGTACTGGTGGTGCTGC
TGGTGTCCGTATTGCTGCTGCTGCTGCTGCTGCAGCTGTTGGTGATGGGG
GTGCTGTTGTTGTTGTTGGTGCTGCTGGTGCTGCTGTTGTGGACAGTGGT
ATGGGTGCTGCTGCTGCTGCTGTTGCATCTGCTGCTGCATGTACGGTGGG
GGCAAGTCAAGTTCTTCAGGTGGGTAGACATGGCTCCTCCCTCCGTAGCT
GCCACCAAGTGGAGGGGGAGGCATAGGGGAGCGCATGGCAATGGAGCTGC
TGCCGCTACCAGAGACACTGTTCCCAAACATAGCGGACTGCTGCTGCGGA
GAAAATTGCATCATCATTTGTGGTCTCTGTAGGGCATATCCGAAATCTGT
CGCCCCCAATCGCTCCCCACTCTCGTACGTGTATGATTCCGCACCCTTGA
CCAAAAACGTCCCGCCAGCACCGCCTCCTACTCCCCCTCCTCTCCCTCCC
CCTCCTCCTCCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|594969

>mRNA_6426-protein ID=mRNA_6426-protein|Name=jgi.p|Nanoce1779_2|594969|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MGVLLLLLVLLVLLLWTVVWVLLLLLLHLLLHVRWGQVKFFRWVDMAPPS
VAATKWRGRHRGAHGNGAAAATRDTVPKHSGLLLRRKLHHHLWSL*
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mRNA from alignment at scaffold_15:601652..602168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6426 ID=mRNA_6426|Name=jgi.p|Nanoce1779_2|594969|organism=Nannochloropsis oceanica|type=mRNA|length=517bp|location=Sequence derived from alignment at scaffold_15:601652..602168- (Nannochloropsis oceanica)
CCAAGGAGGGGGAGAGCGCAGCAGCGTGCTGTGCGTACTGGTGGTGCTGC
TGGTGTCCGTATTGCTGCTGCTGCTGCTGCTGCAGCTGTTGGTGATGGGG
GTGCTGTTGTTGTTGTTGGTGCTGCTGGTGCTGCTGTTGTGGACAGTGGT
ATGGGTGCTGCTGCTGCTGCTGTTGCATCTGCTGCTGCATGTACGGTGGG
GGCAAGTCAAGTTCTTCAGGTGGGTAGACATGGCTCCTCCCTCCGTAGCT
GCCACCAAGTGGAGGGGGAGGCATAGGGGAGCGCATGGCAATGGAGCTGC
TGCCGCTACCAGAGACACTGTTCCCAAACATAGCGGACTGCTGCTGCGGA
GAAAATTGCATCATCATTTGTGGTCTCTGTAGGGCATATCCGAAATCTGT
CGCCCCCAATCGCTCCCCACTCTCGTACGTGTATGATTCCGCACCCTTGA
CCAAAAACGTCCCGCCAGCACCGCCTCCTACTCCCCCTCCTCTCCCTCCC
CCTCCTCCTCCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_15:601652..602168-

>mRNA_6426 ID=mRNA_6426|Name=jgi.p|Nanoce1779_2|594969|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_15:601652..602168- (Nannochloropsis oceanica)
ATGGGGGTGCTGTTGTTGTTGTTGGTGCTGCTGGTGCTGCTGTTGTGGAC
AGTGGTATGGGTGCTGCTGCTGCTGCTGTTGCATCTGCTGCTGCATGTAC
GGTGGGGGCAAGTCAAGTTCTTCAGGTGGGTAGACATGGCTCCTCCCTCC
GTAGCTGCCACCAAGTGGAGGGGGAGGCATAGGGGAGCGCATGGCAATGG
AGCTGCTGCCGCTACCAGAGACACTGTTCCCAAACATAGCGGACTGCTGC
TGCGGAGAAAATTGCATCATCATTTGTGGTCTCTGTAG
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Synonyms
Publications