jgi.p|Nanoce1779_2|594959, mRNA_6422 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594959
Unique Name	mRNA_6422
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2208
Alignment location	scaffold_15:590888..593095 -

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Properties


Property Name	Value
TranscriptId	595045
Track	FilteredModels2
ProteinId	594959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:590888..593095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594959	gene_6422	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594959	mRNA_6422-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6422	CDS_6422	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:590888..593095-
coding sequence from alignment at scaffold_15:590888..593095-

mRNA sequence

>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Nanoce1779_2|594959|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
ACAGGCCTTGCCGTGCATTGAGAAGCCATGGTCCTAGATCTACAGCAACA
CGAGGAGGACTTAAATGCCTGGATATTTGATGAGCGCAAGGTGATCACGG
CCCGGTACCTGGCCCACGTTCTGAATGTGCCCACGGTGGAAGCCCGTCGA
TTGCTGGCTGCCTTCTACCGTAGGCATAGAGGCAAGGTCCTTGCCACCTT
CTTGCTAAGCGGCGAGCGACATCCCGCCAACCCATCCCAGTCAGTAACCA
GCAACGAGGTTTTGCTCCTACCCGAAAGCCGGGTAAAGGCAGAGAAGGAT
CGTTTGTTCGCCCGCCTCGACGGAGTCCAACTCTTCAGCCTACACGCCAC
GCCTTCGACCAAGGCCGAAGCCGGCGAAAATAACGGCTTGGGTCCTGGTG
GCGCCCGCCTGTGGACAGAAGACTTGGTATTGGCAAACGAGCTGCTAGAC
GCATCTTCGGACGCCGGGGAAAGTTTCCGCCTCAACAAGCTTAGCGGCAT
CTCATGCCCCCATATTATTTTTTCTGCTAAGGGCGTCCGTCGCGCCCCTC
AGCCTCCGGCTCCTTCTGCGTCTGCAAAAGGCTGCAGTAGAGGTGCTAGT
GCCAGCACCAGCGGCGAAAGCAACAGCAGTAGTAACCGGGCTTCGGCTGT
GTCATGTAGGCCGAAGGGTAAGGCTATGAGTGTCCAGAATTTCTTTTGCA
AACCTACCACGGCGAAGAACGAGGAAGCATCCGCCCCCAAGGCTCCTAAG
AAGGAGGAAGCGGCAGCACCTACGGAAGAAATGGAGGAGAAGAGTAAGAT
GGAAGATGAGGTAACGCAGACGGCAAGCAGGAAGAGTAAGAAGGTCGTGC
AAGAGGACGAGGAGAACGAGAATGAGGAAGGAGTTGAAGCCCCGTCGCCG
GCCAAAAAGGAGGCTGTTGCCTCTTCCTCTCCCAAGCCCACCAAGAACAA
GACAGAGTTACTGAAAGCTGCATCAAAGGAAAATAAGGAACAGCAGGACA
GTTGTGCGGCTGCGGCGAAGAAAGGGATGGTGGAAGAAGAGAAAGAAAAA
GAAGAGGATGAGGATGGAGGGGAATCTGCGGGCGAGGAGGAGTTCTTGCC
AGGTGCGAAGACAGCGAGTGACAAGCGGAGGGACAAGGAACGGAAGGCTG
CCAGGGAGCAAGCTGAGAGAGAGGCGGAAGGGAGAAGGAAGAAGAAGATG
GCTGCCAAGAAGGATAGAGAGGGAGAGAAGGATGATGACGGACGGGCTGG
CATGGAGGAGAGTAGTGGTGATGAGGAAGATGTCGAGGAGGAGAAGGAGA
CGAGGAAGGGTAAGGGGGAAGGCAAAGGGAAGGGAAAAGGCTCTGGGGAA
GGGAAGAAAAGAGCGGCCAAGAAAAGCAATGCCAAGGGATATCCGCGGAA
GAAGAGCAAGGGGAGTGAGGGGGACGACCGGGAGGAGGAGCTGGAGGAAG
CAGTGCACATTGAGCCTGTCAGTGGTGCCATGGACACTTTTGTTCAACGG
TCGCCCAGCAAACCCGCGGCTCCGGGGGAGAAACGCACTAAGAAGGTATT
GGTGCAGAAGAGTTTCATGGACGAAAAAGGTTACTTTGTCACGGAGAGCG
TGTGGGAGGAGCAGGAGGTGGATGAGTCGTCGCCTGCCTCCACCTCTCCC
AGCAAGAGTAAGGCCCCTGTCAAGTCCGAGCCGGCTGTGGCTTTGGGACA
AAAGCGCAAGGCTGAGGAGGGCGGAGGTGGAGATGGTGGTGGTGATGACA
AGAAGAAGGAGGTCAAGGCGGCATCTGCGAGGACGAAGCAGAAGAGCATG
TTAAGTTTCTTTGGCAAGAGGAATTGAGGGCAGAAAAGCGCGTCATGGAT
GAAGGGAAAATTGGGATAGGGCGATAAGTCCGACGACGTGCGGACACTGA
CTACTCTCTGACTGGTGGACTGGAGAGGGCAAGATATATGGTGGCATGGA
GGAAAAAGAAACATGATGTAAAATATATCTCTGCAGAAGGAACTCGCGGA
AAAGATGCGGAGCGAGCAGGGGAAAAAAGAGCAGAGTGTCTGAGTAAGGG
AGGCATGGTGGAGACACAGAGAGGTAAGGATTGAGGAAGGTAAAATAAGA
CAATGCAGAGATAGTGAAAAGAAAGCAAAGAAAGAAATGACACAGTGAAA
GTGGACAAGCCAGACGAAGGTTAAATGAAAAGAACAGAAGACGAATGGCC
ACACGTGC

protein sequence of jgi.p|Nanoce1779_2|594959

>mRNA_6422-protein ID=mRNA_6422-protein|Name=jgi.p|Nanoce1779_2|594959|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MVLDLQQHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRH
RGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGV
QLFSLHATPSTKAEAGENNGLGPGGARLWTEDLVLANELLDASSDAGESF
RLNKLSGISCPHIIFSAKGVRRAPQPPAPSASAKGCSRGASASTSGESNS
SSNRASAVSCRPKGKAMSVQNFFCKPTTAKNEEASAPKAPKKEEAAAPTE
EMEEKSKMEDEVTQTASRKSKKVVQEDEENENEEGVEAPSPAKKEAVASS
SPKPTKNKTELLKAASKENKEQQDSCAAAAKKGMVEEEKEKEEDEDGGES
AGEEEFLPGAKTASDKRRDKERKAAREQAEREAEGRRKKKMAAKKDREGE
KDDDGRAGMEESSGDEEDVEEEKETRKGKGEGKGKGKGSGEGKKRAAKKS
NAKGYPRKKSKGSEGDDREEELEEAVHIEPVSGAMDTFVQRSPSKPAAPG
EKRTKKVLVQKSFMDEKGYFVTESVWEEQEVDESSPASTSPSKSKAPVKS
EPAVALGQKRKAEEGGGGDGGGDDKKKEVKAASARTKQKSMLSFFGKRN*

mRNA from alignment at scaffold_15:590888..593095-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Nanoce1779_2|594959|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at scaffold_15:590888..593095- (Nannochloropsis oceanica)
ACAGGCCTTGCCGTGCATTGAGAAGCCATGGTCCTAGATCTACAGCAACA
CGAGGAGGACTTAAATGCCTGGATATTTGATGAGCGCAAGGTGATCACGG
CCCGGTACCTGGCCCACGTTCTGAATGTGCCCACGGTGGAAGCCCGTCGA
TTGCTGGCTGCCTTCTACCGTAGGCATAGAGGCAAGGTCCTTGCCACCTT
CTTGCTAAGCGGCGAGCGACATCCCGCCAACCCATCCCAGTCAGTAACCA
GCAACGAGGTTTTGCTCCTACCCGAAAGCCGGGTAAAGGCAGAGAAGGAT
CGTTTGTTCGCCCGCCTCGACGGAGTCCAACTCTTCAGCCTACACGCCAC
GCCTTCGACCAAGGCCGAAGCCGGCGAAAATAACGGCTTGGGTCCTGGTG
GCGCCCGCCTGTGGACAGAAGACTTGGTATTGGCAAACGAGCTGCTAGAC
GCATCTTCGGACGCCGGGGAAAGTTTCCGCCTCAACAAGCTTAGCGGCAT
CTCATGCCCCCATATTATTTTTTCTGCTAAGGGCGTCCGTCGCGCCCCTC
AGCCTCCGGCTCCTTCTGCGTCTGCAAAAGGCTGCAGTAGAGGTGCTAGT
GCCAGCACCAGCGGCGAAAGCAACAGCAGTAGTAACCGGGCTTCGGCTGT
GTCATGTAGGCCGAAGGGTAAGGCTATGAGTGTCCAGAATTTCTTTTGCA
AACCTACCACGGCGAAGAACGAGGAAGCATCCGCCCCCAAGGCTCCTAAG
AAGGAGGAAGCGGCAGCACCTACGGAAGAAATGGAGGAGAAGAGTAAGAT
GGAAGATGAGGTAACGCAGACGGCAAGCAGGAAGAGTAAGAAGGTCGTGC
AAGAGGACGAGGAGAACGAGAATGAGGAAGGAGTTGAAGCCCCGTCGCCG
GCCAAAAAGGAGGCTGTTGCCTCTTCCTCTCCCAAGCCCACCAAGAACAA
GACAGAGTTACTGAAAGCTGCATCAAAGGAAAATAAGGAACAGCAGGACA
GTTGTGCGGCTGCGGCGAAGAAAGGGATGGTGGAAGAAGAGAAAGAAAAA
GAAGAGGATGAGGATGGAGGGGAATCTGCGGGCGAGGAGGAGTTCTTGCC
AGGTGCGAAGACAGCGAGTGACAAGCGGAGGGACAAGGAACGGAAGGCTG
CCAGGGAGCAAGCTGAGAGAGAGGCGGAAGGGAGAAGGAAGAAGAAGATG
GCTGCCAAGAAGGATAGAGAGGGAGAGAAGGATGATGACGGACGGGCTGG
CATGGAGGAGAGTAGTGGTGATGAGGAAGATGTCGAGGAGGAGAAGGAGA
CGAGGAAGGGTAAGGGGGAAGGCAAAGGGAAGGGAAAAGGCTCTGGGGAA
GGGAAGAAAAGAGCGGCCAAGAAAAGCAATGCCAAGGGATATCCGCGGAA
GAAGAGCAAGGGGAGTGAGGGGGACGACCGGGAGGAGGAGCTGGAGGAAG
CAGTGCACATTGAGCCTGTCAGTGGTGCCATGGACACTTTTGTTCAACGG
TCGCCCAGCAAACCCGCGGCTCCGGGGGAGAAACGCACTAAGAAGGTATT
GGTGCAGAAGAGTTTCATGGACGAAAAAGGTTACTTTGTCACGGAGAGCG
TGTGGGAGGAGCAGGAGGTGGATGAGTCGTCGCCTGCCTCCACCTCTCCC
AGCAAGAGTAAGGCCCCTGTCAAGTCCGAGCCGGCTGTGGCTTTGGGACA
AAAGCGCAAGGCTGAGGAGGGCGGAGGTGGAGATGGTGGTGGTGATGACA
AGAAGAAGGAGGTCAAGGCGGCATCTGCGAGGACGAAGCAGAAGAGCATG
TTAAGTTTCTTTGGCAAGAGGAATTGAGGGCAGAAAAGCGCGTCATGGAT
GAAGGGAAAATTGGGATAGGGCGATAAGTCCGACGACGTGCGGACACTGA
CTACTCTCTGACTGGTGGACTGGAGAGGGCAAGATATATGGTGGCATGGA
GGAAAAAGAAACATGATGTAAAATATATCTCTGCAGAAGGAACTCGCGGA
AAAGATGCGGAGCGAGCAGGGGAAAAAAGAGCAGAGTGTCTGAGTAAGGG
AGGCATGGTGGAGACACAGAGAGGTAAGGATTGAGGAAGGTAAAATAAGA
CAATGCAGAGATAGTGAAAAGAAAGCAAAGAAAGAAATGACACAGTGAAA
GTGGACAAGCCAGACGAAGGTTAAATGAAAAGAACAGAAGACGAATGGCC
ACACGTGC

Coding sequence (CDS) from alignment at scaffold_15:590888..593095-

>mRNA_6422 ID=mRNA_6422|Name=jgi.p|Nanoce1779_2|594959|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_15:590888..593095- (Nannochloropsis oceanica)
ATGGTCCTAGATCTACAGCAACACGAGGAGGACTTAAATGCCTGGATATT
TGATGAGCGCAAGGTGATCACGGCCCGGTACCTGGCCCACGTTCTGAATG
TGCCCACGGTGGAAGCCCGTCGATTGCTGGCTGCCTTCTACCGTAGGCAT
AGAGGCAAGGTCCTTGCCACCTTCTTGCTAAGCGGCGAGCGACATCCCGC
CAACCCATCCCAGTCAGTAACCAGCAACGAGGTTTTGCTCCTACCCGAAA
GCCGGGTAAAGGCAGAGAAGGATCGTTTGTTCGCCCGCCTCGACGGAGTC
CAACTCTTCAGCCTACACGCCACGCCTTCGACCAAGGCCGAAGCCGGCGA
AAATAACGGCTTGGGTCCTGGTGGCGCCCGCCTGTGGACAGAAGACTTGG
TATTGGCAAACGAGCTGCTAGACGCATCTTCGGACGCCGGGGAAAGTTTC
CGCCTCAACAAGCTTAGCGGCATCTCATGCCCCCATATTATTTTTTCTGC
TAAGGGCGTCCGTCGCGCCCCTCAGCCTCCGGCTCCTTCTGCGTCTGCAA
AAGGCTGCAGTAGAGGTGCTAGTGCCAGCACCAGCGGCGAAAGCAACAGC
AGTAGTAACCGGGCTTCGGCTGTGTCATGTAGGCCGAAGGGTAAGGCTAT
GAGTGTCCAGAATTTCTTTTGCAAACCTACCACGGCGAAGAACGAGGAAG
CATCCGCCCCCAAGGCTCCTAAGAAGGAGGAAGCGGCAGCACCTACGGAA
GAAATGGAGGAGAAGAGTAAGATGGAAGATGAGGTAACGCAGACGGCAAG
CAGGAAGAGTAAGAAGGTCGTGCAAGAGGACGAGGAGAACGAGAATGAGG
AAGGAGTTGAAGCCCCGTCGCCGGCCAAAAAGGAGGCTGTTGCCTCTTCC
TCTCCCAAGCCCACCAAGAACAAGACAGAGTTACTGAAAGCTGCATCAAA
GGAAAATAAGGAACAGCAGGACAGTTGTGCGGCTGCGGCGAAGAAAGGGA
TGGTGGAAGAAGAGAAAGAAAAAGAAGAGGATGAGGATGGAGGGGAATCT
GCGGGCGAGGAGGAGTTCTTGCCAGGTGCGAAGACAGCGAGTGACAAGCG
GAGGGACAAGGAACGGAAGGCTGCCAGGGAGCAAGCTGAGAGAGAGGCGG
AAGGGAGAAGGAAGAAGAAGATGGCTGCCAAGAAGGATAGAGAGGGAGAG
AAGGATGATGACGGACGGGCTGGCATGGAGGAGAGTAGTGGTGATGAGGA
AGATGTCGAGGAGGAGAAGGAGACGAGGAAGGGTAAGGGGGAAGGCAAAG
GGAAGGGAAAAGGCTCTGGGGAAGGGAAGAAAAGAGCGGCCAAGAAAAGC
AATGCCAAGGGATATCCGCGGAAGAAGAGCAAGGGGAGTGAGGGGGACGA
CCGGGAGGAGGAGCTGGAGGAAGCAGTGCACATTGAGCCTGTCAGTGGTG
CCATGGACACTTTTGTTCAACGGTCGCCCAGCAAACCCGCGGCTCCGGGG
GAGAAACGCACTAAGAAGGTATTGGTGCAGAAGAGTTTCATGGACGAAAA
AGGTTACTTTGTCACGGAGAGCGTGTGGGAGGAGCAGGAGGTGGATGAGT
CGTCGCCTGCCTCCACCTCTCCCAGCAAGAGTAAGGCCCCTGTCAAGTCC
GAGCCGGCTGTGGCTTTGGGACAAAAGCGCAAGGCTGAGGAGGGCGGAGG
TGGAGATGGTGGTGGTGATGACAAGAAGAAGGAGGTCAAGGCGGCATCTG
CGAGGACGAAGCAGAAGAGCATGTTAAGTTTCTTTGGCAAGAGGAATTGA

Synonyms

Publications