jgi.p|Nanoce1779_2|594956, mRNA_6420 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594956
Unique Name	mRNA_6420
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2066
Alignment location	scaffold_15:586116..588285 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595042
Track	FilteredModels2
ProteinId	594956

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:586116..588285 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594956	gene_6420	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594956	mRNA_6420-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6420	CDS_6420	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:586116..588285+
coding sequence from alignment at scaffold_15:586116..588285+

mRNA sequence

>mRNA_6420 ID=mRNA_6420|Name=jgi.p|Nanoce1779_2|594956|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp
AGTACAGGAACTCTGGTCGGCACCTTTTGGAGCTGTTAAATTATCTTCAG
ACCATCGCTCTCTAATCGGAGCACGTGGCCGCAAAAGTCGGAGGAGGGCT
GCGAGTGATTTCCCCGCCCAGCCTAACCAGAGGAATGGCGTCCTGATCGA
CCCCCTTATCCCCTGCCTTACCCAGCCAAGCCAGTGAGTGTACGAGATTG
CCTTATTTTTTCTTGCGTGGTTGCGCATCCGTGTATTTGGTCTTCAATCC
GTAAGGTTGAAAGTCATGTCGTCCTCCAAGCTTTTCCCCGGTGTCGGAAA
GGCGGTAGACCGGAGCAACAGCAGCGCCGAAGGAGAAGTAGGTCATTCTT
CGTCCAGCAGCAGGAGCAGCAGCACAGGTAGGGGCGTCAGCGGGGGAGGG
AATGGCAGCCGCGACAACACCCCAATCATCGCCCGTTACGCCATTTTATC
GGCGGCTTCAGGGGTAGGGACAGGGGCGGTGGCAGCTGGCACGGTGGTAG
AAGGCCGTGGTGTCACGTCTTCGGTGGTTGTGGGCTCGGCGGCGCTTCTT
CTCGATGTGGGGGGAGGAGGCGAGCCCCGGTCGTCGACGCCCGCTCGCTT
GTCGCGTGTCTTAACCCCACTCAAAGGCCAAAACCGACGGCTTACCCACG
CCATGGCTGGTACCGCCACGATATTTGCAGACTTGCAGGCGCGCGAGGAC
CAGCAACGTCAGCAAGCAGAAGCTGCTGCAGCGGCGGCGGGTCAGCGACG
CATTGAGCGTCGCTCTCGCAGAAAAATGCGAAGATGGGCCAACGACCGTT
TGCTGGGCGTGGCGCAAATCTGCAGCAGCTTGCACAATGGTGGCCTGGAG
GGGGAAGAGGAGAGTACGAAGGCAGTGGCGGAAGGAGAGTACGGGCCGTT
TGTGGACCGGGCACAAATCAGTAATTTTTCAACGTTGATGGCGGCAGAGA
ACACAGACCTGCGGGAGCGATTTTTGGCAGGGTATGGGGAGAAGCGTGGA
GCAGAGACAAGAAGGGCGAGAGGAAGGTCGACGCCGTCGCTCTTGAAGGA
TGCGGAGGCGCGATTTCTGCGGTTGGAGTCTCGGTTACGGAGGCTGTTGA
CGCAGCTGGTGGGAACGGATGCGCACATGGGGTTGTTCTTGGAGGATGTG
GAAGCGCTGCTGCGTAGATTCATGGAAGGGGGGGGTAGGCTGCTTTTGAA
AGGTAGTGGAGGAGCAGGAGCACGAAAAGGAGCAGGAGGGCATGGCGGCG
AGAAAGAGGACAGCAAGATTGAGGGTGGGAGTGAGGCTCTGGCCCGGTGG
CTGGCCCGGCCGTTGTACGTAAAGAAGGATTCCTTGGTGCTGCCTTTGAA
CAACTCAGCTTTCTTCCGCCTTCTCATCCACGGGTGCTGCCAGTACTATG
GCCTCCGCTCGCACAGCGAGAACCTGCCTCAGGACAGCGGGGAGGCCGAG
GAAGTGCGGGCGGTGGTGGTTGCCAAGCCTTCCGCCATGCTGGCTGCCTC
GTGGTCCGCCAACTCCTCCATGACCATGTGTGACTTCATCAAGAACCATC
GACTTAACCAGCATCTTGTGCCTAAGCGCCGTGGCGGGAGATGTCTAAAC
GAGGCGTCTGAGGAAGAATGCGTCGTCGCGCGTGCTGTTGCTCCTGTCGT
GCTCAAACCTGTGAAAACCTGATGTATTTTACGCGATAAATACGCTAGGG
GGGTAGCGGGACGAAGGAGAAGGAGAAAGGTGGACAAGGAAGGAAGAGAA
GGAAGAAAAAGCGCAGGATGGAAGAAGGGAAGTGATTGGTCGAGGTGGGA
AGGGTAGTAATAACAGGCACTGTTTGGGGAAGGGGTTGAAGACATGTGTC
CTCAACTTAACTGTAGATTAGCAATCGGGGAAGATAGGGTGTGTGTTCTC
TATACATACAAATGCATGTGAAAGAAAACGAGGGAGGGTGGGAGGCTGCA
CGCACTCATATGGTGTGATCGGGAGCCCAGGGATGGAAGCAAAAGGGAGC
GTAATTTATAATTTTTCCTCGATTTCCGAAATTTTTCAAAGCCAAAAAGA
CATTCACTGTATGCAT

protein sequence of jgi.p|Nanoce1779_2|594956

>mRNA_6420-protein ID=mRNA_6420-protein|Name=jgi.p|Nanoce1779_2|594956|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MSSSKLFPGVGKAVDRSNSSAEGEVGHSSSSSRSSSTGRGVSGGGNGSRD
NTPIIARYAILSAASGVGTGAVAAGTVVEGRGVTSSVVVGSAALLLDVGG
GGEPRSSTPARLSRVLTPLKGQNRRLTHAMAGTATIFADLQAREDQQRQQ
AEAAAAAAGQRRIERRSRRKMRRWANDRLLGVAQICSSLHNGGLEGEEES
TKAVAEGEYGPFVDRAQISNFSTLMAAENTDLRERFLAGYGEKRGAETRR
ARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLR
RFMEGGGRLLLKGSGGAGARKGAGGHGGEKEDSKIEGGSEALARWLARPL
YVKKDSLVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAV
VVAKPSAMLAASWSANSSMTMCDFIKNHRLNQHLVPKRRGGRCLNEASEE
ECVVARAVAPVVLKPVKT*

mRNA from alignment at scaffold_15:586116..588285+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6420 ID=mRNA_6420|Name=jgi.p|Nanoce1779_2|594956|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp|location=Sequence derived from alignment at scaffold_15:586116..588285+ (Nannochloropsis oceanica)
AGTACAGGAACTCTGGTCGGCACCTTTTGGAGCTGTTAAATTATCTTCAG
ACCATCGCTCTCTAATCGGAGCACGTGGCCGCAAAAGTCGGAGGAGGGCT
GCGAGTGATTTCCCCGCCCAGCCTAACCAGAGGAATGGCGTCCTGATCGA
CCCCCTTATCCCCTGCCTTACCCAGCCAAGCCAGTGAGTGTACGAGATTG
CCTTATTTTTTCTTGCGTGGTTGCGCATCCGTGTATTTGGTCTTCAATCC
GTAAGGTTGAAAGGTGTGTAAGTGCGTGCGTGTGTGTGTACGTGCATCTT
AAGCGCCTACATCCATTCCTCATCCTGAATAAACTACGTGTTTGATTGGC
TGAATACCCCGACCCAGTCATGTCGTCCTCCAAGCTTTTCCCCGGTGTCG
GAAAGGCGGTAGACCGGAGCAACAGCAGCGCCGAAGGAGAAGTAGGTCAT
TCTTCGTCCAGCAGCAGGAGCAGCAGCACAGGTAGGGGCGTCAGCGGGGG
AGGGAATGGCAGCCGCGACAACACCCCAATCATCGCCCGTTACGCCATTT
TATCGGCGGCTTCAGGGGTAGGGACAGGGGCGGTGGCAGCTGGCACGGTG
GTAGAAGGCCGTGGTGTCACGTCTTCGGTGGTTGTGGGCTCGGCGGCGCT
TCTTCTCGATGTGGGGGGAGGAGGCGAGCCCCGGTCGTCGACGCCCGCTC
GCTTGTCGCGTGTCTTAACCCCACTCAAAGGCCAAAACCGACGGCTTACC
CACGCCATGGCTGGTACCGCCACGATATTTGCAGACTTGCAGGCGCGCGA
GGACCAGCAACGTCAGCAAGCAGAAGCTGCTGCAGCGGCGGCGGGTCAGC
GACGCATTGAGCGTCGCTCTCGCAGAAAAATGCGAAGATGGGCCAACGAC
CGTTTGCTGGGCGTGGCGCAAATCTGCAGCAGCTTGCACAATGGTGGCCT
GGAGGGGGAAGAGGAGAGTACGAAGGCAGTGGCGGAAGGAGAGTACGGGC
CGTTTGTGGACCGGGCACAAATCAGTAATTTTTCAACGTTGATGGCGGCA
GAGAACACAGACCTGCGGGAGCGATTTTTGGCAGGGTATGGGGAGAAGCG
TGGAGCAGAGACAAGAAGGGCGAGAGGAAGGTCGACGCCGTCGCTCTTGA
AGGATGCGGAGGCGCGATTTCTGCGGTTGGAGTCTCGGTTACGGAGGCTG
TTGACGCAGCTGGTGGGAACGGATGCGCACATGGGGTTGTTCTTGGAGGA
TGTGGAAGCGCTGCTGCGTAGATTCATGGAAGGGGGGGGTAGGCTGCTTT
TGAAAGGTAGTGGAGGAGCAGGAGCACGAAAAGGAGCAGGAGGGCATGGC
GGCGAGAAAGAGGACAGCAAGATTGAGGGTGGGAGTGAGGCTCTGGCCCG
GTGGCTGGCCCGGCCGTTGTACGTAAAGAAGGATTCCTTGGTGCTGCCTT
TGAACAACTCAGCTTTCTTCCGCCTTCTCATCCACGGGTGCTGCCAGTAC
TATGGCCTCCGCTCGCACAGCGAGAACCTGCCTCAGGACAGCGGGGAGGC
CGAGGAAGTGCGGGCGGTGGTGGTTGCCAAGCCTTCCGCCATGCTGGCTG
CCTCGTGGTCCGCCAACTCCTCCATGACCATGTGTGACTTCATCAAGAAC
CATCGACTTAACCAGCATCTTGTGCCTAAGCGCCGTGGCGGGAGATGTCT
AAACGAGGCGTCTGAGGAAGAATGCGTCGTCGCGCGTGCTGTTGCTCCTG
TCGTGCTCAAACCTGTGAAAACCTGATGTATTTTACGCGATAAATACGCT
AGGGGGGTAGCGGGACGAAGGAGAAGGAGAAAGGTGGACAAGGAAGGAAG
AGAAGGAAGAAAAAGCGCAGGATGGAAGAAGGGAAGTGATTGGTCGAGGT
GGGAAGGGTAGTAATAACAGGCACTGTTTGGGGAAGGGGTTGAAGACATG
TGTCCTCAACTTAACTGTAGATTAGCAATCGGGGAAGATAGGGTGTGTGT
TCTCTATACATACAAATGCATGTGAAAGAAAACGAGGGAGGGTGGGAGGC
TGCACGCACTCATATGGTGTGATCGGGAGCCCAGGGATGGAAGCAAAAGG
GAGCGTAATTTATAATTTTTCCTCGATTTCCGAAATTTTTCAAAGCCAAA
AAGACATTCACTGTATGCAT

Coding sequence (CDS) from alignment at scaffold_15:586116..588285+

>mRNA_6420 ID=mRNA_6420|Name=jgi.p|Nanoce1779_2|594956|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_15:586116..588285+ (Nannochloropsis oceanica)
ATGTCGTCCTCCAAGCTTTTCCCCGGTGTCGGAAAGGCGGTAGACCGGAG
CAACAGCAGCGCCGAAGGAGAAGTAGGTCATTCTTCGTCCAGCAGCAGGA
GCAGCAGCACAGGTAGGGGCGTCAGCGGGGGAGGGAATGGCAGCCGCGAC
AACACCCCAATCATCGCCCGTTACGCCATTTTATCGGCGGCTTCAGGGGT
AGGGACAGGGGCGGTGGCAGCTGGCACGGTGGTAGAAGGCCGTGGTGTCA
CGTCTTCGGTGGTTGTGGGCTCGGCGGCGCTTCTTCTCGATGTGGGGGGA
GGAGGCGAGCCCCGGTCGTCGACGCCCGCTCGCTTGTCGCGTGTCTTAAC
CCCACTCAAAGGCCAAAACCGACGGCTTACCCACGCCATGGCTGGTACCG
CCACGATATTTGCAGACTTGCAGGCGCGCGAGGACCAGCAACGTCAGCAA
GCAGAAGCTGCTGCAGCGGCGGCGGGTCAGCGACGCATTGAGCGTCGCTC
TCGCAGAAAAATGCGAAGATGGGCCAACGACCGTTTGCTGGGCGTGGCGC
AAATCTGCAGCAGCTTGCACAATGGTGGCCTGGAGGGGGAAGAGGAGAGT
ACGAAGGCAGTGGCGGAAGGAGAGTACGGGCCGTTTGTGGACCGGGCACA
AATCAGTAATTTTTCAACGTTGATGGCGGCAGAGAACACAGACCTGCGGG
AGCGATTTTTGGCAGGGTATGGGGAGAAGCGTGGAGCAGAGACAAGAAGG
GCGAGAGGAAGGTCGACGCCGTCGCTCTTGAAGGATGCGGAGGCGCGATT
TCTGCGGTTGGAGTCTCGGTTACGGAGGCTGTTGACGCAGCTGGTGGGAA
CGGATGCGCACATGGGGTTGTTCTTGGAGGATGTGGAAGCGCTGCTGCGT
AGATTCATGGAAGGGGGGGGTAGGCTGCTTTTGAAAGGTAGTGGAGGAGC
AGGAGCACGAAAAGGAGCAGGAGGGCATGGCGGCGAGAAAGAGGACAGCA
AGATTGAGGGTGGGAGTGAGGCTCTGGCCCGGTGGCTGGCCCGGCCGTTG
TACGTAAAGAAGGATTCCTTGGTGCTGCCTTTGAACAACTCAGCTTTCTT
CCGCCTTCTCATCCACGGGTGCTGCCAGTACTATGGCCTCCGCTCGCACA
GCGAGAACCTGCCTCAGGACAGCGGGGAGGCCGAGGAAGTGCGGGCGGTG
GTGGTTGCCAAGCCTTCCGCCATGCTGGCTGCCTCGTGGTCCGCCAACTC
CTCCATGACCATGTGTGACTTCATCAAGAACCATCGACTTAACCAGCATC
TTGTGCCTAAGCGCCGTGGCGGGAGATGTCTAAACGAGGCGTCTGAGGAA
GAATGCGTCGTCGCGCGTGCTGTTGCTCCTGTCGTGCTCAAACCTGTGAA
AACCTGA

Synonyms

Publications