jgi.p|Nanoce1779_2|573620, mRNA_642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573620
Unique NamemRNA_642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length469
Alignment locationscaffold_2:80413..80881 +

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Properties
Property NameValue
TranscriptId573706
TrackFilteredModels2
ProteinId573620
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:80413..80881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573620gene_642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573620mRNA_642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_642CDS_642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_642 ID=mRNA_642|Name=jgi.p|Nanoce1779_2|573620|organism=Nannochloropsis oceanica|type=mRNA|length=469bp
TTCCTCTGCAGAGTGCACACACCTATAAATATTTTGGCGTGGGTGAGAGA
GAGAGATGCGGGATGCGGCGGCAGGGTAATGTAGGATTGGACGGAGACAA
GGTGGAGCGTGGAGTGGGGGTCCGGCGCGGGCTAAGCATTGCAGACAACA
CAGAGGGGCACGATGATATGTCGTGACCGCCAGTATATACACATCAAAAA
CTCACCAGTTCGTCGGCTGTCATTGTGGCAATGACCTCGGGCGCCCAGCC
GTCACCCGTCTCGGCGAGTAGCGGGGCTAGAAGCGCCCGGGTCTCATCAA
GAGATGGAGGAGGCATGGTGGTGCTGTGGACTGGCTATTGGTACATTGCG
AAAATCGTGGTATGTTCCGCCATTCTTGCCATGAGACGGGCGGCGTCGGC
TTTTGTGTGTGTGAGTATTTGGTTCATATCATCAAGCGGATGCTTCGGGC
GTTCTTCGCTTGTTGTACT
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protein sequence of jgi.p|Nanoce1779_2|573620

>mRNA_642-protein ID=mRNA_642-protein|Name=jgi.p|Nanoce1779_2|573620|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MTSGAQPSPVSASSGARSARVSSRDGGGMVVLWTGYWYIAKIVVCSAILA
MRRAASAFVCVSIWFISSSGCFGRSSLVV
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mRNA from alignment at scaffold_2:80413..80881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_642 ID=mRNA_642|Name=jgi.p|Nanoce1779_2|573620|organism=Nannochloropsis oceanica|type=mRNA|length=469bp|location=Sequence derived from alignment at scaffold_2:80413..80881+ (Nannochloropsis oceanica)
TTCCTCTGCAGAGTGCACACACCTATAAATATTTTGGCGTGGGTGAGAGA
GAGAGATGCGGGATGCGGCGGCAGGGTAATGTAGGATTGGACGGAGACAA
GGTGGAGCGTGGAGTGGGGGTCCGGCGCGGGCTAAGCATTGCAGACAACA
CAGAGGGGCACGATGATATGTCGTGACCGCCAGTATATACACATCAAAAA
CTCACCAGTTCGTCGGCTGTCATTGTGGCAATGACCTCGGGCGCCCAGCC
GTCACCCGTCTCGGCGAGTAGCGGGGCTAGAAGCGCCCGGGTCTCATCAA
GAGATGGAGGAGGCATGGTGGTGCTGTGGACTGGCTATTGGTACATTGCG
AAAATCGTGGTATGTTCCGCCATTCTTGCCATGAGACGGGCGGCGTCGGC
TTTTGTGTGTGTGAGTATTTGGTTCATATCATCAAGCGGATGCTTCGGGC
GTTCTTCGCTTGTTGTACT
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Coding sequence (CDS) from alignment at scaffold_2:80413..80881+

>mRNA_642 ID=mRNA_642|Name=jgi.p|Nanoce1779_2|573620|organism=Nannochloropsis oceanica|type=CDS|length=239bp|location=Sequence derived from alignment at scaffold_2:80413..80881+ (Nannochloropsis oceanica)
ATGACCTCGGGCGCCCAGCCGTCACCCGTCTCGGCGAGTAGCGGGGCTAG
AAGCGCCCGGGTCTCATCAAGAGATGGAGGAGGCATGGTGGTGCTGTGGA
CTGGCTATTGGTACATTGCGAAAATCGTGGTATGTTCCGCCATTCTTGCC
ATGAGACGGGCGGCGTCGGCTTTTGTGTGTGTGAGTATTTGGTTCATATC
ATCAAGCGGATGCTTCGGGCGTTCTTCGCTTGTTGTACT
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Synonyms
Publications