jgi.p|Nanoce1779_2|92805, mRNA_6419 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|92805
Unique NamemRNA_6419
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length501
Alignment locationscaffold_15:585893..586393 +

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Properties
Property NameValue
TranscriptId92891
TrackFilteredModels2
ProteinId92805
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:585893..586393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|92805gene_6419Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|92805mRNA_6419-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6419CDS_6419Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6419 ID=mRNA_6419|Name=jgi.p|Nanoce1779_2|92805|organism=Nannochloropsis oceanica|type=mRNA|length=501bp
AACGTCTACAGGACGAATTCATTCACGTTCCCATACATGAAGGGTCGACG
ATGTCAGGCCAGGCCAGGCCAGGCCCAGCCCACACACCACTTCCGGGCCG
ATGGGGACGTGGGCGGAAGGCGACTCGGCGTTAAGCTCCAGCTTTGATGC
CACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCATGCC
CTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCACCTTT
TGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCACGTG
GCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCCTAAC
CAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCCAGCC
AAGCCAGTGAGTGTACGAGATTGCCTTATTTTTTCTTGCGTGGTTGCGCA
TCCGTGTATTTGGTCTTCAATCCGTAAGGTTGAAAGGTGTGTAAGTGCGT
G
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protein sequence of jgi.p|Nanoce1779_2|92805

>mRNA_6419-protein ID=mRNA_6419-protein|Name=jgi.p|Nanoce1779_2|92805|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MPPRTARGFTQLYSVIHALFLLPATIVQELWSAPFGAVKLSSDHRSLIGA
RGRKSRRRAASDFPAQPNQRNGVLIDPLIPCLTQPSQ*
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mRNA from alignment at scaffold_15:585893..586393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6419 ID=mRNA_6419|Name=jgi.p|Nanoce1779_2|92805|organism=Nannochloropsis oceanica|type=mRNA|length=501bp|location=Sequence derived from alignment at scaffold_15:585893..586393+ (Nannochloropsis oceanica)
AACGTCTACAGGACGAATTCATTCACGTTCCCATACATGAAGGGTCGACG
ATGTCAGGCCAGGCCAGGCCAGGCCCAGCCCACACACCACTTCCGGGCCG
ATGGGGACGTGGGCGGAAGGCGACTCGGCGTTAAGCTCCAGCTTTGATGC
CACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCATGCC
CTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCACCTTT
TGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCACGTG
GCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCCTAAC
CAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCCAGCC
AAGCCAGTGAGTGTACGAGATTGCCTTATTTTTTCTTGCGTGGTTGCGCA
TCCGTGTATTTGGTCTTCAATCCGTAAGGTTGAAAGGTGTGTAAGTGCGT
G
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Coding sequence (CDS) from alignment at scaffold_15:585893..586393+

>mRNA_6419 ID=mRNA_6419|Name=jgi.p|Nanoce1779_2|92805|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_15:585893..586393+ (Nannochloropsis oceanica)
ATGCCACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCA
TGCCCTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCAC
CTTTTGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCA
CGTGGCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCC
TAACCAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCC
AGCCAAGCCAGTGA
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Synonyms
Publications