jgi.p|Nanoce1779_2|594953, mRNA_6418 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594953
Unique NamemRNA_6418
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_15:584474..585672 +

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Properties
Property NameValue
TranscriptId595039
TrackFilteredModels2
ProteinId594953
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:584474..585672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594953gene_6418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594953mRNA_6418-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6418CDS_6418Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Nanoce1779_2|594953|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
CCGCCGCCAGACAAGGCAGCGAAAGCATTCCCCCGATTCCCACTGCCACT
GATATTGCCTGAATCTCCATTGCTGCTGCTGCTGCTGCTGCCGCGGCTGT
CCCCTTGTCTTGGCTCGCGGCCCCAGCTCGCGGCGCCCGCATGGGCTTCA
GCGGCCCTTATTCGCGTCTGCCGTTTCTCTTCTGCCTCTTGTCGCACCGC
CTCTCGCTCCGCCGCGTGCGCCCGGGCTTCATCTAATGCCGCATCTTCAG
ACAACCGACGATCTTCCTCGGCTTGCGCTTCGATGACGGCCTTGATTTCC
TCTAGCGAGTCTCGCTCTGCCGCCTCGTGCTCCTCCTCATCCTCCTCATT
TATAATTTCCATGTCATGGTTCTTCTCCTTGTGTGGGTTCTCCTCCTCCT
TCAAACCCGCCTCCTTCACGGCTTCTTCACTGATCTGCATTGACACGCCT
TCCTCAAAGATGACAGAACCCTCCTCAAACGGGACATCATGCTGCTGCAG
CGTACCTTCCACTTGTGCATCCTGCGCCTCTAGTTCTGTGGGCGGCGGTT
GCTGCTCTTGCGAAAGCTTCTGCTGCCATGGCGGTTGCTGCTCTTCTTGG
ATTTTAGCCCCTTGTACCTCGTGTGGTGGCTGCTGCTCTTTCTGCCCCTT
CCTTCGCGGCTCTTGCTCCACATCGTGCTCTTGCGGCTCGTGCAGGTCTT
CTTTTTGCTCTCTTTGCGATAGGATGACCTCCTCCGCAAGATCCTGCACC
TCGCTTGCTTCTAACAGCACATTATGGTCCTCCTCATTCTTCTCCTGTTG
GTGGAGTGGCAGTGTCTCATTCACCTGCAGGATAGTAGCGTTTGTTACGC
TCTGCGGGGTAAGATGTAATGGAGAGGCTGGGCTTGCTTTTACTTGCTCC
ATGAGACATGAGAAGAGGATGGTAAGGGAAAACACGGTCCTTCTCCGGCA
GCACTCTCTTTTTCTGGTCGTGTGGCTTGTGCGTCTCCCCATGGCTGGCT
CCTCGTCTTGCTGTTGCACGGATGGAGCACCTCTCTCGCAGCCCTGCGCT
TTGCGCCTCCTTTGCTCTTCCACTTGGAAAGTCAGTGCTCCTGCCTTGGG
TTGAGGGATAGGGAGACGGAAGTTAGACTGGTAGAAAGGACACATCACGG
TGGTAGGTATTGGAAGTGGCAATGGAGGCGAATGCATCAGGCGGATTAT
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protein sequence of jgi.p|Nanoce1779_2|594953

>mRNA_6418-protein ID=mRNA_6418-protein|Name=jgi.p|Nanoce1779_2|594953|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MTALISSSESRSAASCSSSSSSFIISMSWFFSLCGFSSSFKPASFTASSL
ICIDTPSSKMTEPSSNGTSCCCSVPSTCASCASSSVGGGCCSCESFCCHG
GCCSSWILAPCTSCGGCCSFCPFLRGSCSTSCSCGSCRSSFCSLCDRMTS
SARSCTSLASNSTLWSSSFFSCWWSGSVSFTCRIVAFVTLCGVRCNGEAG
LAFTCSMRHEKRMVRENTVLLRQHSLFLVVWLVRLPMAGSSSCCCTDGAP
LSQPCALRLLCSSTWKVSAPALG*
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mRNA from alignment at scaffold_15:584474..585672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Nanoce1779_2|594953|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp|location=Sequence derived from alignment at scaffold_15:584474..585672+ (Nannochloropsis oceanica)
CCGCCGCCAGACAAGGCAGCGAAAGCATTCCCCCGATTCCCACTGCCACT
GATATTGCCTGAATCTCCATTGCTGCTGCTGCTGCTGCTGCCGCGGCTGT
CCCCTTGTCTTGGCTCGCGGCCCCAGCTCGCGGCGCCCGCATGGGCTTCA
GCGGCCCTTATTCGCGTCTGCCGTTTCTCTTCTGCCTCTTGTCGCACCGC
CTCTCGCTCCGCCGCGTGCGCCCGGGCTTCATCTAATGCCGCATCTTCAG
ACAACCGACGATCTTCCTCGGCTTGCGCTTCGATGACGGCCTTGATTTCC
TCTAGCGAGTCTCGCTCTGCCGCCTCGTGCTCCTCCTCATCCTCCTCATT
TATAATTTCCATGTCATGGTTCTTCTCCTTGTGTGGGTTCTCCTCCTCCT
TCAAACCCGCCTCCTTCACGGCTTCTTCACTGATCTGCATTGACACGCCT
TCCTCAAAGATGACAGAACCCTCCTCAAACGGGACATCATGCTGCTGCAG
CGTACCTTCCACTTGTGCATCCTGCGCCTCTAGTTCTGTGGGCGGCGGTT
GCTGCTCTTGCGAAAGCTTCTGCTGCCATGGCGGTTGCTGCTCTTCTTGG
ATTTTAGCCCCTTGTACCTCGTGTGGTGGCTGCTGCTCTTTCTGCCCCTT
CCTTCGCGGCTCTTGCTCCACATCGTGCTCTTGCGGCTCGTGCAGGTCTT
CTTTTTGCTCTCTTTGCGATAGGATGACCTCCTCCGCAAGATCCTGCACC
TCGCTTGCTTCTAACAGCACATTATGGTCCTCCTCATTCTTCTCCTGTTG
GTGGAGTGGCAGTGTCTCATTCACCTGCAGGATAGTAGCGTTTGTTACGC
TCTGCGGGGTAAGATGTAATGGAGAGGCTGGGCTTGCTTTTACTTGCTCC
ATGAGACATGAGAAGAGGATGGTAAGGGAAAACACGGTCCTTCTCCGGCA
GCACTCTCTTTTTCTGGTCGTGTGGCTTGTGCGTCTCCCCATGGCTGGCT
CCTCGTCTTGCTGTTGCACGGATGGAGCACCTCTCTCGCAGCCCTGCGCT
TTGCGCCTCCTTTGCTCTTCCACTTGGAAAGTCAGTGCTCCTGCCTTGGG
TTGAGGGATAGGGAGACGGAAGTTAGACTGGTAGAAAGGACACATCACGG
TGGTAGGTATTGGAAGTGGCAATGGAGGCGAATGCATCAGGCGGATTAT
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Coding sequence (CDS) from alignment at scaffold_15:584474..585672+

>mRNA_6418 ID=mRNA_6418|Name=jgi.p|Nanoce1779_2|594953|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_15:584474..585672+ (Nannochloropsis oceanica)
ATGACGGCCTTGATTTCCTCTAGCGAGTCTCGCTCTGCCGCCTCGTGCTC
CTCCTCATCCTCCTCATTTATAATTTCCATGTCATGGTTCTTCTCCTTGT
GTGGGTTCTCCTCCTCCTTCAAACCCGCCTCCTTCACGGCTTCTTCACTG
ATCTGCATTGACACGCCTTCCTCAAAGATGACAGAACCCTCCTCAAACGG
GACATCATGCTGCTGCAGCGTACCTTCCACTTGTGCATCCTGCGCCTCTA
GTTCTGTGGGCGGCGGTTGCTGCTCTTGCGAAAGCTTCTGCTGCCATGGC
GGTTGCTGCTCTTCTTGGATTTTAGCCCCTTGTACCTCGTGTGGTGGCTG
CTGCTCTTTCTGCCCCTTCCTTCGCGGCTCTTGCTCCACATCGTGCTCTT
GCGGCTCGTGCAGGTCTTCTTTTTGCTCTCTTTGCGATAGGATGACCTCC
TCCGCAAGATCCTGCACCTCGCTTGCTTCTAACAGCACATTATGGTCCTC
CTCATTCTTCTCCTGTTGGTGGAGTGGCAGTGTCTCATTCACCTGCAGGA
TAGTAGCGTTTGTTACGCTCTGCGGGGTAAGATGTAATGGAGAGGCTGGG
CTTGCTTTTACTTGCTCCATGAGACATGAGAAGAGGATGGTAAGGGAAAA
CACGGTCCTTCTCCGGCAGCACTCTCTTTTTCTGGTCGTGTGGCTTGTGC
GTCTCCCCATGGCTGGCTCCTCGTCTTGCTGTTGCACGGATGGAGCACCT
CTCTCGCAGCCCTGCGCTTTGCGCCTCCTTTGCTCTTCCACTTGGAAAGT
CAGTGCTCCTGCCTTGGGTTGA
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Synonyms
Publications