jgi.p|Nanoce1779_2|594951, mRNA_6417 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594951
Unique NamemRNA_6417
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1099
Alignment locationscaffold_15:583524..584622 -

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Properties
Property NameValue
TranscriptId595037
TrackFilteredModels2
ProteinId594951
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:583524..584622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594951gene_6417Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594951mRNA_6417-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6417CDS_6417Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6417 ID=mRNA_6417|Name=jgi.p|Nanoce1779_2|594951|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
GAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGGGGA
CAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATATCA
GTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGCGGT
TCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCATGC
AGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCCCAC
CCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGTGGT
GGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCAGCA
AGAGAGAAGCATGCACGGGGGCAGTGGGGACAAGAGTGCGACAGTGCGGG
CTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTATGGT
GGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGACCC
GGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGTTGC
GGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAGAAG
GATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATCGGC
ACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATCCGG
ACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAAGAA
GCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTTGTA
CCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTCTCA
AAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAGCGG
AAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTTGTA
GATTGTAGTGTCGGATGGAGAAAAATCAAATACAACAAATGAGACAGACG
ACAACAAAAGAAAACTGGTCCCCCCTCGTATAACATCACGAGACTTGCGT
CATTTCTCGCACAAGACGAAAAAGAATCATAGAATTAAATATTGTTGCA
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protein sequence of jgi.p|Nanoce1779_2|594951

>mRNA_6417-protein ID=mRNA_6417-protein|Name=jgi.p|Nanoce1779_2|594951|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MMSAAFGGGAGGPGTISFEDMMTQQERSMHGGSGDKSATVRARLAAKLVL
ETDALLYGGQGGSGGAGLEIGDDDPEEEEGGMIEGKKAALLRDRTGKEIA
RILREGEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQ
EAFQLVQEAYESLSGPSERRAYDLYLVKLRTKHWKQRIRPLKDKLDELSD
YYEPVLERKGKIALGAFLVWALVL*
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mRNA from alignment at scaffold_15:583524..584622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6417 ID=mRNA_6417|Name=jgi.p|Nanoce1779_2|594951|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at scaffold_15:583524..584622- (Nannochloropsis oceanica)
GAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGGGGA
CAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATATCA
GTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGCGGT
TCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCATGC
AGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCCCAC
CCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGTGGT
GGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCAGCA
AGAGAGAAGCATGCACGGGGGCAGTGGGGACAAGAGTGCGACAGTGCGGG
CTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTATGGT
GGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGACCC
GGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGTTGC
GGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAGAAG
GATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATCGGC
ACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATCCGG
ACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAAGAA
GCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTTGTA
CCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTCTCA
AAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAGCGG
AAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTTGTA
GATTGTAGTGTCGGATGGAGAAAAATCAAATACAACAAATGAGACAGACG
ACAACAAAAGAAAACTGGTCCCCCCTCGTATAACATCACGAGACTTGCGT
CATTTCTCGCACAAGACGAAAAAGAATCATAGAATTAAATATTGTTGCA
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Coding sequence (CDS) from alignment at scaffold_15:583524..584622-

>mRNA_6417 ID=mRNA_6417|Name=jgi.p|Nanoce1779_2|594951|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_15:583524..584622- (Nannochloropsis oceanica)
ATGATGAGTGCTGCGTTTGGTGGTGGGGCGGGCGGGCCTGGAACGATATC
CTTTGAGGATATGATGACGCAGCAAGAGAGAAGCATGCACGGGGGCAGTG
GGGACAAGAGTGCGACAGTGCGGGCTCGGCTAGCGGCTAAATTGGTGTTG
GAGACGGACGCACTTCTTTATGGTGGGCAAGGCGGGTCTGGGGGCGCTGG
GTTGGAGATAGGTGATGACGACCCGGAGGAGGAAGAGGGAGGGATGATTG
AGGGGAAGAAGGCAGCGCTGTTGCGGGACCGGACGGGCAAGGAAATTGCA
CGGATCCTGCGAGAAGGGGAGAAGGATGACCCGAATTGGTATGCCGTACT
GGGCATCTCTCGGCGAGCATCGGCACAGACTGTTAAGGACAGCTTCCGAC
GGCTGGTGTTGCTCATTCATCCGGACAAGACAGCGAGCCGCGGGGCACAG
GAGGCGTTCCAGCTGGTGCAAGAAGCCTATGAGAGCCTTTCTGGCCCAAG
CGAGCGCCGGGCCTACGACTTGTACCTGGTCAAGTTGCGGACCAAGCACT
GGAAGCAGCGTATCCGTCCTCTCAAAGACAAGCTGGACGAGCTCTCAGAT
TACTACGAGCCGGTCCTCGAGCGGAAAGGCAAGATTGCCCTCGGTGCATT
CTTAGTGTGGGCCTTGGTTTTGTAG
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Synonyms
Publications