jgi.p|Nanoce1779_2|594950, mRNA_6416 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594950
Unique NamemRNA_6416
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length937
Alignment locationscaffold_15:582587..583523 +

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Properties
Property NameValue
TranscriptId595036
TrackFilteredModels2
ProteinId594950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:582587..583523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594950gene_6416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594950mRNA_6416-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6416CDS_6416Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6416 ID=mRNA_6416|Name=jgi.p|Nanoce1779_2|594950|organism=Nannochloropsis oceanica|type=mRNA|length=937bp
AATAGGTGTTTATCTTCTTCACGAAGATGTCCTTTTCCTTCAGCTTTGAT
CTTCCTGCCGAGCCGTTGACCACTTCCAGCGCCAACCCCGAGCCCCTACC
ACTGCCCCACCCGCCATCAGGCCCGTCGTCGACGCTCACCCCAGTGGCAC
CGGCTCGTCTCATCCAATTTATCGTGCCCCCGGTATTACCTCTGTCGCGG
AGCGTGTCACTGTTGGGCGATAGCGGGGGTAGTCACCAGGTAGGCACTGG
TGCTTCCATTCGGATAGTGGAGAGCGTGGCTGGGGTGATGGTGGATGTGC
CAGATGGAGTGGACCTGGTGCCCGGCGTGTACGAAGGCGGACTCAAAGTG
TGGGAATCCAGCGTGGATCTCGTACGCTATCTTCAGCAGCACAACTTGGT
GCAATTGCACCACCGTGTGCTAGAGTTGGGCTGTGGTCATGGGCTGCCGG
GCATCCACGCTTTGCAGCAAGGCGCCGCAAGCGTGACCTTCTTGGACTTG
AACGAAGAGGTGCTGCGCGAAGTGACCGGTCCCAACATTTGCCTCAATGT
TGATAGTACGGATGACTTGTCAAAGAGGGTAACCTTGGTCAGCGGTGACT
GGGAAGCGGCATCCGAGGTTTTGAATCAGCATGTTCCGGCAGCGTTCGAC
GTGATCGTGAGCGCCGAGACCTTCTACACCTCCCTCGTGACGGAGAAGCT
TCTAAACACCATCCATCGTCACCTCGCACGACAACCGCCAGGAGCCGTTG
CCATTGTGGCTGGCAAGCGATACTACTTTGGCACAGGGGGATCTGTGGTG
GATCTAGGGGCTCGAGCCAGTGCCTTAGGTTTTGAGTCCCGGGTGGTGGC
CTCGGTGGAGGATGGCAAGAGCAACATTCGCGATCTGATAGAAATCACAT
GGAAATAGAAGGGATCGGAGAACGACCAAGCAAACAA
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protein sequence of jgi.p|Nanoce1779_2|594950

>mRNA_6416-protein ID=mRNA_6416-protein|Name=jgi.p|Nanoce1779_2|594950|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSFSFSFDLPAEPLTTSSANPEPLPLPHPPSGPSSTLTPVAPARLIQFIV
PPVLPLSRSVSLLGDSGGSHQVGTGASIRIVESVAGVMVDVPDGVDLVPG
VYEGGLKVWESSVDLVRYLQQHNLVQLHHRVLELGCGHGLPGIHALQQGA
ASVTFLDLNEEVLREVTGPNICLNVDSTDDLSKRVTLVSGDWEAASEVLN
QHVPAAFDVIVSAETFYTSLVTEKLLNTIHRHLARQPPGAVAIVAGKRYY
FGTGGSVVDLGARASALGFESRVVASVEDGKSNIRDLIEITWK*
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mRNA from alignment at scaffold_15:582587..583523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6416 ID=mRNA_6416|Name=jgi.p|Nanoce1779_2|594950|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_15:582587..583523+ (Nannochloropsis oceanica)
AATAGGTGTTTATCTTCTTCACGAAGATGTCCTTTTCCTTCAGCTTTGAT
CTTCCTGCCGAGCCGTTGACCACTTCCAGCGCCAACCCCGAGCCCCTACC
ACTGCCCCACCCGCCATCAGGCCCGTCGTCGACGCTCACCCCAGTGGCAC
CGGCTCGTCTCATCCAATTTATCGTGCCCCCGGTATTACCTCTGTCGCGG
AGCGTGTCACTGTTGGGCGATAGCGGGGGTAGTCACCAGGTAGGCACTGG
TGCTTCCATTCGGATAGTGGAGAGCGTGGCTGGGGTGATGGTGGATGTGC
CAGATGGAGTGGACCTGGTGCCCGGCGTGTACGAAGGCGGACTCAAAGTG
TGGGAATCCAGCGTGGATCTCGTACGCTATCTTCAGCAGCACAACTTGGT
GCAATTGCACCACCGTGTGCTAGAGTTGGGCTGTGGTCATGGGCTGCCGG
GCATCCACGCTTTGCAGCAAGGCGCCGCAAGCGTGACCTTCTTGGACTTG
AACGAAGAGGTGCTGCGCGAAGTGACCGGTCCCAACATTTGCCTCAATGT
TGATAGTACGGATGACTTGTCAAAGAGGGTAACCTTGGTCAGCGGTGACT
GGGAAGCGGCATCCGAGGTTTTGAATCAGCATGTTCCGGCAGCGTTCGAC
GTGATCGTGAGCGCCGAGACCTTCTACACCTCCCTCGTGACGGAGAAGCT
TCTAAACACCATCCATCGTCACCTCGCACGACAACCGCCAGGAGCCGTTG
CCATTGTGGCTGGCAAGCGATACTACTTTGGCACAGGGGGATCTGTGGTG
GATCTAGGGGCTCGAGCCAGTGCCTTAGGTTTTGAGTCCCGGGTGGTGGC
CTCGGTGGAGGATGGCAAGAGCAACATTCGCGATCTGATAGAAATCACAT
GGAAATAGAAGGGATCGGAGAACGACCAAGCAAACAA
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Coding sequence (CDS) from alignment at scaffold_15:582587..583523+

>mRNA_6416 ID=mRNA_6416|Name=jgi.p|Nanoce1779_2|594950|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_15:582587..583523+ (Nannochloropsis oceanica)
ATGTCCTTTTCCTTCAGCTTTGATCTTCCTGCCGAGCCGTTGACCACTTC
CAGCGCCAACCCCGAGCCCCTACCACTGCCCCACCCGCCATCAGGCCCGT
CGTCGACGCTCACCCCAGTGGCACCGGCTCGTCTCATCCAATTTATCGTG
CCCCCGGTATTACCTCTGTCGCGGAGCGTGTCACTGTTGGGCGATAGCGG
GGGTAGTCACCAGGTAGGCACTGGTGCTTCCATTCGGATAGTGGAGAGCG
TGGCTGGGGTGATGGTGGATGTGCCAGATGGAGTGGACCTGGTGCCCGGC
GTGTACGAAGGCGGACTCAAAGTGTGGGAATCCAGCGTGGATCTCGTACG
CTATCTTCAGCAGCACAACTTGGTGCAATTGCACCACCGTGTGCTAGAGT
TGGGCTGTGGTCATGGGCTGCCGGGCATCCACGCTTTGCAGCAAGGCGCC
GCAAGCGTGACCTTCTTGGACTTGAACGAAGAGGTGCTGCGCGAAGTGAC
CGGTCCCAACATTTGCCTCAATGTTGATAGTACGGATGACTTGTCAAAGA
GGGTAACCTTGGTCAGCGGTGACTGGGAAGCGGCATCCGAGGTTTTGAAT
CAGCATGTTCCGGCAGCGTTCGACGTGATCGTGAGCGCCGAGACCTTCTA
CACCTCCCTCGTGACGGAGAAGCTTCTAAACACCATCCATCGTCACCTCG
CACGACAACCGCCAGGAGCCGTTGCCATTGTGGCTGGCAAGCGATACTAC
TTTGGCACAGGGGGATCTGTGGTGGATCTAGGGGCTCGAGCCAGTGCCTT
AGGTTTTGAGTCCCGGGTGGTGGCCTCGGTGGAGGATGGCAAGAGCAACA
TTCGCGATCTGATAGAAATCACATGGAAATAG
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Synonyms
Publications