jgi.p|Nanoce1779_2|594944, mRNA_6415 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594944
Unique Name	mRNA_6415
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1236
Alignment location	scaffold_15:580860..582319 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595030
Track	FilteredModels2
ProteinId	594944

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:580860..582319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594944	gene_6415	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594944	mRNA_6415-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6415	CDS_6415	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:580860..582319+
coding sequence from alignment at scaffold_15:580860..582319+

mRNA sequence

>mRNA_6415 ID=mRNA_6415|Name=jgi.p|Nanoce1779_2|594944|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
CAATAGGCTATCTTTGCCGCTGCCGACCCACTTTATCTCCCCAATAAAAG
CGGGGGCGCAAGATCAGCAACCGACAGCACACGAGTACCTAACCCATACT
TTACCATGGCACCGACCTCTGCGCCACCCGTCAACTCACTGACGCACCCA
CGGGATCTCAAGGGCTACGGCCGGCACCCGCCCGACCCCAAGTGGCCCGG
GGGAGCCAAGCTGGCAGTCCAGTTTGTCATCAATTACGAGGAAGGCGGGG
AAAATTGCATCTTAGATGGGGACAGCCAGTCAGAGCACTTGCTCTCCGAA
ATAGTCGGTGCGGCGCCCTTGCCGGGCGTTCGTCATGCCAACATGGAGTC
TTTGTACGAGTACGGCTCGCGGGCGGGTTTTTGGCGCTTACATCGGCTTT
TCACACAGAAAGGCGTGCCAGTGACGGTTTATGCGGTGGCGCTAGCCCTG
GCCAAGAACCCCGAGGCCGGCAAGGCAATGGTGGAGGCCGGATGGGAAGT
GGCCAGTCACGGGTATCGGTGGATCGACTACCAGTACATGGGCGAGGCCA
GTGAGCGGGAGCACATCCGCAAGGCTGTAGCTATCACCACGGAGGTGTGC
GGGACCCGGCCAGTGGGGATGTATCAGGGCAAGCCAAACATCAATACTCG
CAAGCTGGTGGTGGAGGAGGGTGGCTTTCTTTACGACTCCGACTGCTACA
GCGACGACCTGCCATTCTGGAACACGGAATACGGTCGCCCACACTTGGTG
ATCCCTTATACGCTGGACGTGAACGACATGCGGTTCGCCACCCCACAGGG
CTTCAATTGCGGGGACCAATTCTACACGTACCTTAAGGATTCGTTCGACT
ACTTGCGCCAAGAAGGACTGAACGGCAGCCCAAAGATGATGTCGGTGGGC
CTGCATTGCCGATTGGTAGGCAAACCGGGGCGTTGCATGGCCTTGGCACG
ATTCTTGGACTATGCCAAGAGTTTTGACGACGTTTGGATCTGTCGCCGTG
TCGACATTGCCAACCATTGGCATGCTCACCACCCTCCTCCGACGCTGTCC
AAGATTTAAGCAAGTGCGAGGCCCTACAGTGTGGAGGTCGGATGAGGGTG
AATACGCGCGTTTAGGTTCTTAACAGAAAGTTGTGACTACCAAAAAAAGT
TGAGCATAACTGATTCAGTGTGAATGGGGTCCTGTGTCGGATAGCGATCC
AAGACCAAAAAAGAAATTAAAGAGGCATTCCCTGTC

protein sequence of jgi.p|Nanoce1779_2|594944

>mRNA_6415-protein ID=mRNA_6415-protein|Name=jgi.p|Nanoce1779_2|594944|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MAPTSAPPVNSLTHPRDLKGYGRHPPDPKWPGGAKLAVQFVINYEEGGEN
CILDGDSQSEHLLSEIVGAAPLPGVRHANMESLYEYGSRAGFWRLHRLFT
QKGVPVTVYAVALALAKNPEAGKAMVEAGWEVASHGYRWIDYQYMGEASE
REHIRKAVAITTEVCGTRPVGMYQGKPNINTRKLVVEEGGFLYDSDCYSD
DLPFWNTEYGRPHLVIPYTLDVNDMRFATPQGFNCGDQFYTYLKDSFDYL
RQEGLNGSPKMMSVGLHCRLVGKPGRCMALARFLDYAKSFDDVWICRRVD
IANHWHAHHPPPTLSKI*

mRNA from alignment at scaffold_15:580860..582319+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6415 ID=mRNA_6415|Name=jgi.p|Nanoce1779_2|594944|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp|location=Sequence derived from alignment at scaffold_15:580860..582319+ (Nannochloropsis oceanica)
CAATAGGCTATCTTTGCCGCTGCCGACCCACTTTATCTCCCCAATAAAAG
CGGGGGCGCAAGATCAGCAACCGACAGCACACGAGTACCTAACCCATACT
TTACCATGGCACCGACCTCTGCGCCACCCGTCAACTCACTGACGCACCCA
CGGGATCTCAAGGGCTACGGCCGGCACCCGCCCGACCCCAAGTGGCCCGG
GGGAGCCAAGCTGGCAGTCCAGTTTGTCATCAATTACGAGGAAGGCGGGG
AAAATTGCATCTTAGATGGGGACAGCCAGTCAGAGCACTTGCTCTCCGAA
ATAGTCGGTGCGGCGCCCTTGCCGGGCGTTCGTCATGCCAACATGGAGTC
TTTGTACGAGTACGGCTCGCGGGCGGGTTTTTGGCGCTTACATCGGCTTT
TCACACAGAAAGGCGTGCCAGTGACGGTTTATGCGGTGGCGCTAGCCCTG
GCCAAGAACCCCGAGGCCGGCAAGGCAATGGTGGAGGCCGGATGGGAAGG
TAAGTGACATTAAATACACATCAGAAGATGTGACGTTGAGTTAGATGGGA
CTCAGTTCAGTCAGCCAATAAAACCTCCCCATACACACACAATGGTGACA
GTGGCCAGTCACGGGTATCGGTGGATCGACTACCAGTACATGGGCGAGGC
CAGTGAGCGGGAGCACATCCGCAAGGCTGTAGCTATCACCACGGAGGTGT
GCGGGACCCGGCCAGTGGGGATGTATCAGGGCAAGCCAAACATCAATACT
CGCAAGCTGGTGGTGGAGGAGGGTGGCTTTCTTTACGACTCCGACTGCTA
CAGCGACGACCTGCCATTCTGGAACACGGAATACGGTCGCCCACACTTGG
TGATCCCTTATACGCTGGACGTGAACGACATGCGGTTCGCCACCCCACAG
GGCTTCAATTGCGGGGACCAATTCTACACGTACCTTAAGGTAGGGTCGGC
GGATAGGAAGGGATGTGCTAGATCTATTTAAACATAGTCGATCCGCGACA
GCATTGCAATGAATCGTGAGGTGAAAAGGCAACTAACATTACCGTTTCTT
GGATACTACAGGATTCGTTCGACTACTTGCGCCAAGAAGGACTGAACGGC
AGCCCAAAGATGATGTCGGTGGGCCTGCATTGCCGATTGGTAGGCAAACC
GGGGCGTTGCATGGCCTTGGCACGATTCTTGGACTATGCCAAGAGTTTTG
ACGACGTTTGGATCTGTCGCCGTGTCGACATTGCCAACCATTGGCATGCT
CACCACCCTCCTCCGACGCTGTCCAAGATTTAAGCAAGTGCGAGGCCCTA
CAGTGTGGAGGTCGGATGAGGGTGAATACGCGCGTTTAGGTTCTTAACAG
AAAGTTGTGACTACCAAAAAAAGTTGAGCATAACTGATTCAGTGTGAATG
GGGTCCTGTGTCGGATAGCGATCCAAGACCAAAAAAGAAATTAAAGAGGC
ATTCCCTGTC

Coding sequence (CDS) from alignment at scaffold_15:580860..582319+

>mRNA_6415 ID=mRNA_6415|Name=jgi.p|Nanoce1779_2|594944|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_15:580860..582319+ (Nannochloropsis oceanica)
ATGGCACCGACCTCTGCGCCACCCGTCAACTCACTGACGCACCCACGGGA
TCTCAAGGGCTACGGCCGGCACCCGCCCGACCCCAAGTGGCCCGGGGGAG
CCAAGCTGGCAGTCCAGTTTGTCATCAATTACGAGGAAGGCGGGGAAAAT
TGCATCTTAGATGGGGACAGCCAGTCAGAGCACTTGCTCTCCGAAATAGT
CGGTGCGGCGCCCTTGCCGGGCGTTCGTCATGCCAACATGGAGTCTTTGT
ACGAGTACGGCTCGCGGGCGGGTTTTTGGCGCTTACATCGGCTTTTCACA
CAGAAAGGCGTGCCAGTGACGGTTTATGCGGTGGCGCTAGCCCTGGCCAA
GAACCCCGAGGCCGGCAAGGCAATGGTGGAGGCCGGATGGGAAGTGGCCA
GTCACGGGTATCGGTGGATCGACTACCAGTACATGGGCGAGGCCAGTGAG
CGGGAGCACATCCGCAAGGCTGTAGCTATCACCACGGAGGTGTGCGGGAC
CCGGCCAGTGGGGATGTATCAGGGCAAGCCAAACATCAATACTCGCAAGC
TGGTGGTGGAGGAGGGTGGCTTTCTTTACGACTCCGACTGCTACAGCGAC
GACCTGCCATTCTGGAACACGGAATACGGTCGCCCACACTTGGTGATCCC
TTATACGCTGGACGTGAACGACATGCGGTTCGCCACCCCACAGGGCTTCA
ATTGCGGGGACCAATTCTACACGTACCTTAAGGATTCGTTCGACTACTTG
CGCCAAGAAGGACTGAACGGCAGCCCAAAGATGATGTCGGTGGGCCTGCA
TTGCCGATTGGTAGGCAAACCGGGGCGTTGCATGGCCTTGGCACGATTCT
TGGACTATGCCAAGAGTTTTGACGACGTTTGGATCTGTCGCCGTGTCGAC
ATTGCCAACCATTGGCATGCTCACCACCCTCCTCCGACGCTGTCCAAGAT
TTAAATGGCACCGACCTCTGCGCCACCCGTCAACTCACTGACGCACCCAC
GGGATCTCAAGGGCTACGGCCGGCACCCGCCCGACCCCAAGTGGCCCGGG
GGAGCCAAGCTGGCAGTCCAGTTTGTCATCAATTACGAGGAAGGCGGGGA
AAATTGCATCTTAGATGGGGACAGCCAGTCAGAGCACTTGCTCTCCGAAA
TAGTCGGTGCGGCGCCCTTGCCGGGCGTTCGTCATGCCAACATGGAGTCT
TTGTACGAGTACGGCTCGCGGGCGGGTTTTTGGCGCTTACATCGGCTTTT
CACACAGAAAGGCGTGCCAGTGACGGTTTATGCGGTGGCGCTAGCCCTGG
CCAAGAACCCCGAGGCCGGCAAGGCAATGGTGGAGGCCGGATGGGAAGTG
GCCAGTCACGGGTATCGGTGGATCGACTACCAGTACATGGGCGAGGCCAG
TGAGCGGGAGCACATCCGCAAGGCTGTAGCTATCACCACGGAGGTGTGCG
GGACCCGGCCAGTGGGGATGTATCAGGGCAAGCCAAACATCAATACTCGC
AAGCTGGTGGTGGAGGAGGGTGGCTTTCTTTACGACTCCGACTGCTACAG
CGACGACCTGCCATTCTGGAACACGGAATACGGTCGCCCACACTTGGTGA
TCCCTTATACGCTGGACGTGAACGACATGCGGTTCGCCACCCCACAGGGC
TTCAATTGCGGGGACCAATTCTACACGTACCTTAAGGATTCGTTCGACTA
CTTGCGCCAAGAAGGACTGAACGGCAGCCCAAAGATGATGTCGGTGGGCC
TGCATTGCCGATTGGTAGGCAAACCGGGGCGTTGCATGGCCTTGGCACGA
TTCTTGGACTATGCCAAGAGTTTTGACGACGTTTGGATCTGTCGCCGTGT
CGACATTGCCAACCATTGGCATGCTCACCACCCTCCTCCGACGCTGTCCA
AGATTTAAATGGCACCGACCTCTGCGCCACCCGTCAACTCACTGACGCAC
CCACGGGATCTCAAGGGCTACGGCCGGCACCCGCCCGACCCCAAGTGGCC
CGGGGGAGCCAAGCTGGCAGTCCAGTTTGTCATCAATTACGAGGAAGGCG
GGGAAAATTGCATCTTAGATGGGGACAGCCAGTCAGAGCACTTGCTCTCC
GAAATAGTCGGTGCGGCGCCCTTGCCGGGCGTTCGTCATGCCAACATGGA
GTCTTTGTACGAGTACGGCTCGCGGGCGGGTTTTTGGCGCTTACATCGGC
TTTTCACACAGAAAGGCGTGCCAGTGACGGTTTATGCGGTGGCGCTAGCC
CTGGCCAAGAACCCCGAGGCCGGCAAGGCAATGGTGGAGGCCGGATGGGA
AGTGGCCAGTCACGGGTATCGGTGGATCGACTACCAGTACATGGGCGAGG
CCAGTGAGCGGGAGCACATCCGCAAGGCTGTAGCTATCACCACGGAGGTG
TGCGGGACCCGGCCAGTGGGGATGTATCAGGGCAAGCCAAACATCAATAC
TCGCAAGCTGGTGGTGGAGGAGGGTGGCTTTCTTTACGACTCCGACTGCT
ACAGCGACGACCTGCCATTCTGGAACACGGAATACGGTCGCCCACACTTG
GTGATCCCTTATACGCTGGACGTGAACGACATGCGGTTCGCCACCCCACA
GGGCTTCAATTGCGGGGACCAATTCTACACGTACCTTAAGGATTCGTTCG
ACTACTTGCGCCAAGAAGGACTGAACGGCAGCCCAAAGATGATGTCGGTG
GGCCTGCATTGCCGATTGGTAGGCAAACCGGGGCGTTGCATGGCCTTGGC
ACGATTCTTGGACTATGCCAAGAGTTTTGACGACGTTTGGATCTGTCGCC
GTGTCGACATTGCCAACCATTGGCATGCTCACCACCCTCCTCCGACGCTG
TCCAAGATTTAA

Synonyms

Publications