jgi.p|Nanoce1779_2|594941, mRNA_6413 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594941
Unique Name	mRNA_6413
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	882
Alignment location	scaffold_15:578648..579529 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595027
Track	FilteredModels2
ProteinId	594941

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:578648..579529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594941	gene_6413	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594941	mRNA_6413-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6413	CDS_6413	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:578648..579529+
coding sequence from alignment at scaffold_15:578648..579529+

mRNA sequence

>mRNA_6413 ID=mRNA_6413|Name=jgi.p|Nanoce1779_2|594941|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
CAAGGCAGCCGCGCCGCTGGCACTAGGTGGTCCCGTGGGCTGCCGCAGTC
ATCCTCGACTTCATCTTCTTGCTTCCTGCTTACTCCCCCCCTCATCATAA
TGCCACCTGAGGATGGGCAATCAGAAGTCTCGGTGACCACGGGCATTCCA
GTCAACAGCGGCAGCTCAACCTGCTCAACTACGACAGTCGGGGCGGAGCA
TGCGTTTGCCGCCTTGAGCATGGAGGGACTATCAGGAGACTCGGCGGGTG
CAACCGCGAGTTCATTCATCACCAGCACCATCGTCAATGCAAGCAGCAGC
GCACGGGCCTCCCCGCCCCATACCTCTCCCACGCACCGCACCCTACCTTT
GGAGCAAGCTATTCCTTCCACTCGGGCTCACAGCCCACTCTCCTTGACAC
AGCTTTGCTTGGTTTCAATCGCTGAGAATAGCGCGGGCTTGGTCTCGATA
GAGGGGCTCGCGGAGGAGTTATGCATCCGCCTGCTGCGAGAAGTGTTAGT
ACTGGGAAAGTTGGACTTTCGGTTATGCCGGGTTTTTATGGAGAGTGAAC
ATGAGGAATTAAGCAAAGCCGTGGCAAGTTTGAATTTGTTCGACGCCTTG
GGGTGTGTGCCTGCGAGAGGGAGTGGCTTTGGAGGTTGCCGACGGTGAGA
GAGACCGAGGGAGGACAGCTCGATGAAGGAGTATACATAGAAAGCATAAA
TAAAGCATGCAGGTGAGATAGCAGCATGTAAATATTTGAGGGCAGTCGCA
CAAACGGATGGATTAGGGGGGAAGAGAAGATGACGAGTGTAAAATGTGAA
CAAGAAGAGGATTGTGAGACTTAGACCGGCTTGCGAACAAATTAGAAATA
GGACAAAACGAATGAAGGCTTCTACCTTTTTC

protein sequence of jgi.p|Nanoce1779_2|594941

>mRNA_6413-protein ID=mRNA_6413-protein|Name=jgi.p|Nanoce1779_2|594941|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPPEDGQSEVSVTTGIPVNSGSSTCSTTTVGAEHAFAALSMEGLSGDSAG
ATASSFITSTIVNASSSARASPPHTSPTHRTLPLEQAIPSTRAHSPLSLT
QLCLVSIAENSAGLVSIEGLAEELCIRLLREVLVLGKLDFRLCRVFMESE
HEELSKAVASLNLFDALGCVPARGSGFGGCRR*

mRNA from alignment at scaffold_15:578648..579529+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6413 ID=mRNA_6413|Name=jgi.p|Nanoce1779_2|594941|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at scaffold_15:578648..579529+ (Nannochloropsis oceanica)
CAAGGCAGCCGCGCCGCTGGCACTAGGTGGTCCCGTGGGCTGCCGCAGTC
ATCCTCGACTTCATCTTCTTGCTTCCTGCTTACTCCCCCCCTCATCATAA
TGCCACCTGAGGATGGGCAATCAGAAGTCTCGGTGACCACGGGCATTCCA
GTCAACAGCGGCAGCTCAACCTGCTCAACTACGACAGTCGGGGCGGAGCA
TGCGTTTGCCGCCTTGAGCATGGAGGGACTATCAGGAGACTCGGCGGGTG
CAACCGCGAGTTCATTCATCACCAGCACCATCGTCAATGCAAGCAGCAGC
GCACGGGCCTCCCCGCCCCATACCTCTCCCACGCACCGCACCCTACCTTT
GGAGCAAGCTATTCCTTCCACTCGGGCTCACAGCCCACTCTCCTTGACAC
AGCTTTGCTTGGTTTCAATCGCTGAGAATAGCGCGGGCTTGGTCTCGATA
GAGGGGCTCGCGGAGGAGTTATGCATCCGCCTGCTGCGAGAAGTGTTAGT
ACTGGGAAAGTTGGACTTTCGGTTATGCCGGGTTTTTATGGAGAGTGAAC
ATGAGGAATTAAGCAAAGCCGTGGCAAGTTTGAATTTGTTCGACGCCTTG
GGGTGTGTGCCTGCGAGAGGGAGTGGCTTTGGAGGTTGCCGACGGTGAGA
GAGACCGAGGGAGGACAGCTCGATGAAGGAGTATACATAGAAAGCATAAA
TAAAGCATGCAGGTGAGATAGCAGCATGTAAATATTTGAGGGCAGTCGCA
CAAACGGATGGATTAGGGGGGAAGAGAAGATGACGAGTGTAAAATGTGAA
CAAGAAGAGGATTGTGAGACTTAGACCGGCTTGCGAACAAATTAGAAATA
GGACAAAACGAATGAAGGCTTCTACCTTTTTC

Coding sequence (CDS) from alignment at scaffold_15:578648..579529+

>mRNA_6413 ID=mRNA_6413|Name=jgi.p|Nanoce1779_2|594941|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_15:578648..579529+ (Nannochloropsis oceanica)
ATGCCACCTGAGGATGGGCAATCAGAAGTCTCGGTGACCACGGGCATTCC
AGTCAACAGCGGCAGCTCAACCTGCTCAACTACGACAGTCGGGGCGGAGC
ATGCGTTTGCCGCCTTGAGCATGGAGGGACTATCAGGAGACTCGGCGGGT
GCAACCGCGAGTTCATTCATCACCAGCACCATCGTCAATGCAAGCAGCAG
CGCACGGGCCTCCCCGCCCCATACCTCTCCCACGCACCGCACCCTACCTT
TGGAGCAAGCTATTCCTTCCACTCGGGCTCACAGCCCACTCTCCTTGACA
CAGCTTTGCTTGGTTTCAATCGCTGAGAATAGCGCGGGCTTGGTCTCGAT
AGAGGGGCTCGCGGAGGAGTTATGCATCCGCCTGCTGCGAGAAGTGTTAG
TACTGGGAAAGTTGGACTTTCGGTTATGCCGGGTTTTTATGGAGAGTGAA
CATGAGGAATTAAGCAAAGCCGTGGCAAGTTTGAATTTGTTCGACGCCTT
GGGGTGTGTGCCTGCGAGAGGGAGTGGCTTTGGAGGTTGCCGACGGTGA

Synonyms

Publications